BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0529.0027.p (206 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KI87.1 B3KI87_9BACI Signal peptidase I EC=3.4.21.89 270 7e-71 B1DMF4.1 B1DMF4_9BACL Signal peptidase I EC=3.4.21.89 194 3e-48 Q5L0P2.1 Q5L0P2_GEOKA Signal peptidase I EC=3.4.21.89 145 3e-33 C3J3Y1.1 C3J3Y1_9BACI Signal peptidase I EC=3.4.21.89 145 3e-33 B7YAC7.1 B7YAC7_9BACI Signal peptidase I EC=3.4.21.89 145 3e-33 >B3KI87.1 B3KI87_9BACI Signal peptidase I EC=3.4.21.89 Length = 204 Score = 270 bits (689), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 137/207 (66%), Positives = 158/207 (76%), Gaps = 4/207 (1%) Query: 1 MQQDLQQGQGEVVEPD-GKNPRKPKNEVLEXXXXXXXXXXXXXXXXXXXFKPFIVDGPSM 59 M++D Q E +E + GK +K KNE++E FKPFIV GPSM Sbjct: 1 MEKDQHQ---EAIETNVGKPAKKAKNELVEWLKALLIALVLVVLIRWLLFKPFIVQGPSM 57 Query: 60 QPNFHTGERVIVNEILYDIRSPQRGEVIVFHVPSEGRDFIKRVIGVAGDTVKVEGDVVTV 119 +PNF + +++IVNEILYDIR P+RGEVIVFHVP EGRDFIKRVI VAGDTVKVEGD V V Sbjct: 58 EPNFVSNQKLIVNEILYDIRKPERGEVIVFHVPDEGRDFIKRVIAVAGDTVKVEGDKVLV 117 Query: 120 NGQPVNESYIQGAIDEAHKNNALYNNKNFPNEDFTDGTVPEGHVFVMGDNRSDSTDSRMI 179 NG+PVNE+YIQ AID+AH N LYNN +FPN DG VPEGHVFVMGDNRS+STDSRMI Sbjct: 118 NGEPVNETYIQEAIDQAHAENRLYNNTDFPNSFVQDGVVPEGHVFVMGDNRSNSTDSRMI 177 Query: 180 GYVPLGDIVGRADLIFWPVKDISVINH 206 GYVPLGDI+GRADLIFWP+KDI +INH Sbjct: 178 GYVPLGDIIGRADLIFWPIKDIGLINH 204 >B1DMF4.1 B1DMF4_9BACL Signal peptidase I EC=3.4.21.89 Length = 225 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 92/159 (57%), Positives = 122/159 (76%), Gaps = 1/159 (0%) Query: 49 FKPFIVDGPSMQPNFHTGERVIVNEILYDIRSPQRGEVIVFHVPSEGRDFIKRVIGVAGD 108 F PFIV+GPSM+PNF+TGER+IVN++++ IR P GEV+VFHVP +GRDFIKRVIGV GD Sbjct: 62 FSPFIVEGPSMEPNFYTGERLIVNKLIFKIREPHHGEVVVFHVPDQGRDFIKRVIGVPGD 121 Query: 109 TVKVEGDVVTVNGQPVNESYIQGAIDEAHKNNALYNN-KNFPNEDFTDGTVPEGHVFVMG 167 T+KV GD V VN Q V+E YI+ AI+ AH + LYN +FPN + ++ VP+G +F MG Sbjct: 122 TIKVVGDDVFVNDQKVDEPYIKEAIEAAHASGELYNTGPDFPNANVSESVVPDGKIFAMG 181 Query: 168 DNRSDSTDSRMIGYVPLGDIVGRADLIFWPVKDISVINH 206 D+R +S DSR IG+V +++GRAD +FWP+ IS+I H Sbjct: 182 DHRGNSQDSRDIGFVSEKEVIGRADAMFWPLNKISIIKH 220 >Q5L0P2.1 Q5L0P2_GEOKA Signal peptidase I EC=3.4.21.89 Length = 184 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 49 FKPFIVDGPSMQPNFHTGERVIVNEILYDIRSPQRGEVIVFHVPSEGRDFIKRVIGVAGD 108 F P IVDG SM P H ER+IVN++ Y I P R ++IVFH EGRD+IKRVIG+ GD Sbjct: 30 FAPIIVDGYSMMPTLHNHERMIVNKLAYKIGMPHRFDIIVFHA-EEGRDYIKRVIGLPGD 88 Query: 109 TVKVEGDVVTVNGQPVNESYIQGAIDEAHKNNALYNNKNFPNEDFT-DGTVPEGHVFVMG 167 ++ + D + +NG+P E Y+ + L ++F E+ T TVP GH+FVMG Sbjct: 89 RIEYKNDTLYINGKPYEEPYLDEYKKQLSDGGPL--TESFTLEELTGRSTVPPGHLFVMG 146 Query: 168 DNRSDSTDSRMIGYVPLGDIVGRADLIFWPVKDISVIN 205 DNR S DSR IG++P+ +VG+A+L++WP+ D ++ Sbjct: 147 DNRRFSKDSRHIGFIPMSKVVGKANLVYWPLADARIVK 184 >C3J3Y1.1 C3J3Y1_9BACI Signal peptidase I EC=3.4.21.89 Length = 184 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 49 FKPFIVDGPSMQPNFHTGERVIVNEILYDIRSPQRGEVIVFHVPSEGRDFIKRVIGVAGD 108 F P IVDG SM P H ER+IVN++ Y I P R ++IVFH EGRD+IKRVIG+ GD Sbjct: 30 FAPIIVDGYSMMPTLHNHERMIVNKLAYKIGMPHRFDIIVFHA-EEGRDYIKRVIGLPGD 88 Query: 109 TVKVEGDVVTVNGQPVNESYIQGAIDEAHKNNALYNNKNFPNEDFT-DGTVPEGHVFVMG 167 ++ + D + +NG+P E Y+ + L ++F E+ T TVP GH+FVMG Sbjct: 89 RIEYKNDTLYINGKPYEEPYLDEYKKQLSDGGPL--TESFTLEELTGRSTVPPGHLFVMG 146 Query: 168 DNRSDSTDSRMIGYVPLGDIVGRADLIFWPVKDISVIN 205 DNR S DSR IG++P+ +VG+A+L++WP+ D ++ Sbjct: 147 DNRRFSKDSRHIGFIPMSKVVGKANLVYWPLSDARIVK 184 >B7YAC7.1 B7YAC7_9BACI Signal peptidase I EC=3.4.21.89 Length = 184 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 49 FKPFIVDGPSMQPNFHTGERVIVNEILYDIRSPQRGEVIVFHVPSEGRDFIKRVIGVAGD 108 F P IVDG SM P H ER+IVN++ Y I P R ++IVFH EGRD+IKRVIG+ GD Sbjct: 30 FAPIIVDGYSMMPTLHNHERMIVNKLAYKIGMPHRFDIIVFHA-EEGRDYIKRVIGLPGD 88 Query: 109 TVKVEGDVVTVNGQPVNESYIQGAIDEAHKNNALYNNKNFPNEDFT-DGTVPEGHVFVMG 167 ++ + D + +NG+P E Y+ + L ++F E+ T TVP GH+FVMG Sbjct: 89 RIEYKNDTLYINGKPYEEPYLDEYKKQLSDGGPL--TESFTLEELTGRSTVPPGHLFVMG 146 Query: 168 DNRSDSTDSRMIGYVPLGDIVGRADLIFWPVKDISVIN 205 DNR S DSR IG++P+ +VG+A+L++WP+ D ++ Sbjct: 147 DNRRFSKDSRHIGFIPMSKVVGKANLVYWPLSDARIVK 184 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,275,959,918 Number of extensions: 53540160 Number of successful extensions: 123029 Number of sequences better than 1.0e-05: 2110 Number of HSP's gapped: 119142 Number of HSP's successfully gapped: 2121 Length of query: 206 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 77 Effective length of database: 1,845,385,268 Effective search space: 142094665636 Effective search space used: 142094665636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 128 (53.9 bits)