BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0529.0022.p (305 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B3U5.1 Q2B3U5_9BACI Transcriptional regulator (AraC/XylS famil... 298 6e-79 A3I6A0.1 A3I6A0_9BACI Putative uncharacterized protein 291 7e-77 Q5L3M5.1 Q5L3M5_GEOKA Transcriptional regulator (AraC/XylS family) 286 2e-75 C3EF12.1 C3EF12_BACTK Transcriptional regulator, AraC 281 5e-74 C2X648.1 C2X648_BACCE Transcriptional regulator, AraC 281 7e-74 >Q2B3U5.1 Q2B3U5_9BACI Transcriptional regulator (AraC/XylS family) protein Length = 297 Score = 298 bits (762), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 139/293 (47%), Positives = 206/293 (70%), Gaps = 6/293 (2%) Query: 15 YYEVIHKSIDFIERHLDEELNLDRIAKEAGFSKFHFHRIFQKYVGKSPAEYIRTRKLSSA 74 Y +I KSI+ IE L E+L+LD IA+ AGFSKFH+HRIFQK VG + +EYIR R+++++ Sbjct: 6 YSSIIQKSIEHIESSLHEDLSLDHIAQTAGFSKFHYHRIFQKEVGVTVSEYIRYRRIANS 65 Query: 75 AYLLLNSEERILDIAVHYGFESQEAFTRAFKSLYALPPAEYRAQMKLLIQESEEFTM--- 131 A++LL ++E+ILDIA+++ FESQEAFTR+FK Y LPP +YR + L ++ EE M Sbjct: 66 AHMLLYTDEKILDIALYFQFESQEAFTRSFKKYYHLPPGKYRKLIGKLAEQKEEKNMDKE 125 Query: 132 SEIKGWLITGTAPGNYKAALDMQIYHKGRNSVSLERTADGSPDDSEFGTLMQQFDAKNYL 191 + KGW+++G+ P NY+ +D + +HKG++S L+ +P EF T+MQ+ +AKNY Sbjct: 126 QKPKGWVLSGSHPFNYQMGIDHETFHKGKSSGYLQSQTVEAP--GEFATMMQEINAKNYR 183 Query: 192 GKRMRFAGFIRTSEVTGWCGLWMRIDDKLQNLLGFDNMQYRNIKGTNDWNYYACVLDIPE 251 GKR++F+GF++++ V G+C WMR+D+ +L FDNM R IKG+ WNYY VLD+PE Sbjct: 184 GKRLKFSGFLKSNNVDGFCSFWMRVDNASDEVLQFDNMGNRPIKGSTGWNYYDIVLDVPE 243 Query: 252 EADCINIGILLTGSGKVWLDDCTFDEVGMDIPVTDVRTRTQNFPLEPQNLKFE 304 + I G++L+G GKVW+D+ F+EV +P T++ T++ EP NL FE Sbjct: 244 NSAVIAFGVILSGRGKVWVDELKFEEVSTSVPTTNIDF-TRDLHEEPVNLSFE 295 >A3I6A0.1 A3I6A0_9BACI Putative uncharacterized protein Length = 308 Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 203/299 (67%), Gaps = 6/299 (2%) Query: 9 KEVPRLYYE--VIHKSIDFIERHLDEELNLDRIAKEAGFSKFHFHRIFQKYVGKSPAEYI 66 KEVP LY +I K I ++E +L E L L+ IA ++ FSK+HFHRIFQ +G + EYI Sbjct: 10 KEVPSLYNHEIIIKKIILYVEENLHEPLPLENIAAQSNFSKYHFHRIFQSTIGMTVTEYI 69 Query: 67 RTRKLSSAAYLLLNSEERILDIAVHYGFESQEAFTRAFKSLYALPPAEYRAQMKLLIQES 126 R R+L++A+ LL + ERILDIA++Y FESQE+FTRAFK +Y LPP +YR M +I+ Sbjct: 70 RLRRLANASSALLYTSERILDIALYYQFESQESFTRAFKEIYKLPPGKYRRMMSNVIKIK 129 Query: 127 EEFTM-SEIKGWLITGTAPGNYKAALDMQIYHKGRNSVSLERTADGSPDDSEFGTLMQQF 185 EE M +++KGW ++G+ P NY+ +D ++ H+G+ S L+ + D +EF T+MQ F Sbjct: 130 EETNMDTKVKGWFLSGSNPFNYEMGIDHEVVHQGKASGYLK--SKTVLDSTEFATMMQTF 187 Query: 186 DAKNYLGKRMRFAGFIRTSEVTGWCGLWMRIDDKLQNLLGFDNMQYRNIKGTNDWNYYAC 245 A ++GKR+R + FIRT EV + G+WMR+DD ++++L FDNM R IKGT +WN+Y+ Sbjct: 188 KANQFVGKRIRLSCFIRTEEVDTYAGMWMRVDDTMEDVLQFDNMSNRPIKGTTNWNHYSI 247 Query: 246 VLDIPEEADCINIGILLTGSGKVWLDDCTFDEVGMDIPVTDVRTRTQNFPLEPQNLKFE 304 +LD+P ++ I+ GI+L+G G VW D TF+EV IP T++ + EP NL F+ Sbjct: 248 ILDVPTQSAVISFGIILSGQGTVWADQFTFEEVNESIPTTNLEVHGELLD-EPINLSFD 305 >Q5L3M5.1 Q5L3M5_GEOKA Transcriptional regulator (AraC/XylS family) Length = 294 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 136/292 (46%), Positives = 204/292 (69%), Gaps = 5/292 (1%) Query: 15 YYEVIHKSIDFIERHLDEELNLDRIAKEAGFSKFHFHRIFQKYVGKSPAEYIRTRKLSSA 74 Y +I K+I++IE +L EEL+L+ IA+ AGFSK+HFHRIFQK VG + +EY+R R+++++ Sbjct: 3 YSPIIQKTIEYIETNLHEELSLENIAQFAGFSKYHFHRIFQKEVGVTVSEYVRYRRIANS 62 Query: 75 AYLLLNSEERILDIAVHYGFESQEAFTRAFKSLYALPPAEYRAQMKLLIQESEEFTMS-- 132 A +LL ++++I+DIA +Y FE+QE+FTR+FK Y LPP +YR M L + E+ + Sbjct: 63 ANMLLYTDKKIIDIAFYYRFETQESFTRSFKKYYQLPPGQYRKIMGKLTLQREDVMLKNE 122 Query: 133 EIKGWLITGTAPGNYKAALDMQIYHKGRNSVSLERTADGSPDDSEFGTLMQQFDAKNYLG 192 ++KGW ++G+ P NYK +D +I+HKG+ S L+ S +EF T+MQQF A+ YLG Sbjct: 123 QLKGWKLSGSHPFNYKMGIDREIFHKGKASGFLKAVTVQS--QAEFATMMQQFKAEKYLG 180 Query: 193 KRMRFAGFIRTSEVTGWCGLWMRIDDKLQNLLGFDNMQYRNIKGTNDWNYYACVLDIPEE 252 KR++ +GFI++ V G+CG WMR+DD L ++L FDNM R I G +WN+Y VLD+P+ Sbjct: 181 KRIKLSGFIKSKGVDGFCGFWMRVDDALGDVLQFDNMSDRPIVGDTEWNHYYIVLDVPKN 240 Query: 253 ADCINIGILLTGSGKVWLDDCTFDEVGMDIPVTDVRTRTQNFPLEPQNLKFE 304 + I+ G+LL+G G+VW+D+ F+EV P T++ T + EP NL FE Sbjct: 241 SAVISFGVLLSGKGQVWIDELKFEEVDERTPTTNIDF-TVDLLDEPTNLSFE 291 >C3EF12.1 C3EF12_BACTK Transcriptional regulator, AraC Length = 299 Score = 281 bits (719), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 142/296 (47%), Positives = 189/296 (63%), Gaps = 11/296 (3%) Query: 15 YYEVIHKSIDFIERHLDEELNLDRIAKEAGFSKFHFHRIFQKYVGKSPAEYIRTRKLSSA 74 Y E+I KSI++IE HL EEL +R+A + S +HFHRIFQ+YVG S +YIR R+L+ A Sbjct: 5 YKEIIKKSIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYVGMSVTDYIRKRRLTHA 64 Query: 75 AYLLLNSEERILDIAVHYGFESQEAFTRAFKSLYALPPAEYRAQMKLLIQESEEFTMSE- 133 A +L+++E ++DIAV YGF SQEAFTRAFK ++ LPP +YR + E E +M + Sbjct: 65 AQVLVSTERAVIDIAVQYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKG 124 Query: 134 -IKGWLITGTAPGNYKAALDMQIYHKGRNSVSLERTADGSPDDSEFGTLMQQFDAKNYLG 192 KGW+++G+ P Y+ LD ++ H+G+ S ++ A + F TLMQ F A Y+G Sbjct: 125 IPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIK--AKENVTHGGFSTLMQMFRADKYVG 182 Query: 193 KRMRFAGFIRTSEVTGWCGLWMRIDDKLQNLLGFDNMQYRNIKGTNDWNYYACVLDIPEE 252 KR+RF FI++ V W GLWMR+D K L DNMQ R IK TN+W Y+ VLDI EE Sbjct: 183 KRLRFTAFIKSENVRDWAGLWMRVDGKDTESLAMDNMQNRPIKNTNNWQSYSVVLDIKEE 242 Query: 253 ADCINIGILLTGSGKVWLDDCTFDEVGMDIPVTDVRTRTQNF----PLEPQNLKFE 304 A I G+LL+G G VWLD FDEV IP TD+ +NF EP NL+FE Sbjct: 243 ALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPSTDL---AENFYETLLEEPVNLQFE 295 >C2X648.1 C2X648_BACCE Transcriptional regulator, AraC Length = 299 Score = 281 bits (718), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 142/296 (47%), Positives = 189/296 (63%), Gaps = 11/296 (3%) Query: 15 YYEVIHKSIDFIERHLDEELNLDRIAKEAGFSKFHFHRIFQKYVGKSPAEYIRTRKLSSA 74 Y E+I KSI++IE HL EEL +R+A + S +HFHRIFQ+YVG S +YIR R+L+ A Sbjct: 5 YKEIIKKSIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYVGMSVTDYIRKRRLTHA 64 Query: 75 AYLLLNSEERILDIAVHYGFESQEAFTRAFKSLYALPPAEYRAQMKLLIQESEEFTMSE- 133 A +L+++E ++DIAV YGF SQEAFTRAFK ++ LPP +YR + E E +M + Sbjct: 65 AQVLVSTERAVIDIAVQYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKG 124 Query: 134 -IKGWLITGTAPGNYKAALDMQIYHKGRNSVSLERTADGSPDDSEFGTLMQQFDAKNYLG 192 KGW+++G+ P Y+ LD ++ H+G+ S ++ A + F TLMQ F A Y+G Sbjct: 125 IPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIK--AKENVTHGGFSTLMQMFRADKYVG 182 Query: 193 KRMRFAGFIRTSEVTGWCGLWMRIDDKLQNLLGFDNMQYRNIKGTNDWNYYACVLDIPEE 252 KR+RF FI++ V W GLWMR+D K L DNMQ R IK TN+W Y+ VLDI EE Sbjct: 183 KRLRFTAFIKSENVRDWAGLWMRVDGKDTEPLAMDNMQNRPIKNTNNWQSYSVVLDIKEE 242 Query: 253 ADCINIGILLTGSGKVWLDDCTFDEVGMDIPVTDVRTRTQNF----PLEPQNLKFE 304 A I G+LL+G G VWLD FDEV IP TD+ +NF EP NL+FE Sbjct: 243 ALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPSTDL---AENFYETLLEEPVNLQFE 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,870,479,518 Number of extensions: 78323298 Number of successful extensions: 180698 Number of sequences better than 1.0e-05: 4616 Number of HSP's gapped: 180989 Number of HSP's successfully gapped: 4616 Length of query: 305 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 170 Effective length of database: 1,788,859,178 Effective search space: 304106060260 Effective search space used: 304106060260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)