BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0018.p
         (64 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGI9.1 B3KGI9_9BACI RNA-binding protein (KH domain)                 113   4e-24
B1DME8.1 B1DME8_9BACL Putative uncharacterized protein                 94   4e-18
C0ZFN4.1 C0ZFN4_BREBN Putative uncharacterized protein                 92   2e-17
B2A2N8.1 B2A2N8_NATTJ RNA-binding protein (KH domain)                  86   1e-15
A6TRS8.1 A6TRS8_ALKMQ RNA-binding protein (KH domain)                  83   7e-15

>B3KGI9.1 B3KGI9_9BACI RNA-binding protein (KH domain)
          Length = 76

 Score =  113 bits (283), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/64 (89%), Positives = 61/64 (95%)

Query: 1  VDHPEDVAVRTVEKDHLIVYELSVHPDDVGKVIGKQGRIAKALRTVVTSAAVKSDKRVTV 60
          VDHPEDV V+TVEK+HLIVYEL VHPDDVGKVIGKQGRIAK+LRTVVTSAAVK DKRVTV
Sbjct: 13 VDHPEDVTVKTVEKEHLIVYELYVHPDDVGKVIGKQGRIAKSLRTVVTSAAVKMDKRVTV 72

Query: 61 DILS 64
          DI+S
Sbjct: 73 DIIS 76


>B1DME8.1 B1DME8_9BACL Putative uncharacterized protein
          Length = 76

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 53/64 (82%)

Query: 1  VDHPEDVAVRTVEKDHLIVYELSVHPDDVGKVIGKQGRIAKALRTVVTSAAVKSDKRVTV 60
          VDHPEDV V+  E D   VYELSVH DD+GKVIGKQGRIAKA+R VVTSAA+KS KRV V
Sbjct: 13 VDHPEDVRVKEREDDRGTVYELSVHADDIGKVIGKQGRIAKAMRAVVTSAAIKSQKRVIV 72

Query: 61 DILS 64
          DI+S
Sbjct: 73 DIIS 76


>C0ZFN4.1 C0ZFN4_BREBN Putative uncharacterized protein
          Length = 75

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%)

Query: 1  VDHPEDVAVRTVEKDHLIVYELSVHPDDVGKVIGKQGRIAKALRTVVTSAAVKSDKRVTV 60
          VDHP +V V  V+K+  +V+ELSVHPDD+GK+IGKQGRIAKALRTVV +A+V++DKRVTV
Sbjct: 13 VDHPNEVRVNAVDKERTLVFELSVHPDDMGKIIGKQGRIAKALRTVVIAASVETDKRVTV 72

Query: 61 DIL 63
          +I+
Sbjct: 73 EIV 75


>B2A2N8.1 B2A2N8_NATTJ RNA-binding protein (KH domain)
          Length = 76

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 53/64 (82%)

Query: 1  VDHPEDVAVRTVEKDHLIVYELSVHPDDVGKVIGKQGRIAKALRTVVTSAAVKSDKRVTV 60
          VDHPE+V+V  VE    +V EL VHPDD+GKVIGKQGRIAK++RTVV++AA++ +KRV V
Sbjct: 13 VDHPEEVSVSEVEGKKAMVLELKVHPDDMGKVIGKQGRIAKSIRTVVSAAAIRENKRVMV 72

Query: 61 DILS 64
          +I+ 
Sbjct: 73 EIVQ 76


>A6TRS8.1 A6TRS8_ALKMQ RNA-binding protein (KH domain)
          Length = 76

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 51/64 (79%)

Query: 1  VDHPEDVAVRTVEKDHLIVYELSVHPDDVGKVIGKQGRIAKALRTVVTSAAVKSDKRVTV 60
          VD+PE V+V  +E +  I+ EL V PDD+GKVIGKQGRIAKA+RTVV +AA+K +KRV V
Sbjct: 13 VDYPEQVSVNEIEGNQSIIVELKVAPDDMGKVIGKQGRIAKAIRTVVKAAAIKENKRVVV 72

Query: 61 DILS 64
          +I+ 
Sbjct: 73 EIIQ 76


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 333,041,211
Number of extensions: 9488562
Number of successful extensions: 32838
Number of sequences better than 1.0e-05: 371
Number of HSP's gapped: 32852
Number of HSP's successfully gapped: 371
Length of query: 64
Length of database: 3,060,696,203
Length adjustment: 36
Effective length of query: 28
Effective length of database: 2,721,539,663
Effective search space: 76203110564
Effective search space used: 76203110564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)