BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0017.p
         (70 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGJ0.1 B3KGJ0_9BACI Ribosomal protein S16                           132   1e-29
B1DME7.1 B1DME7_9BACL Ribosomal protein S16                           127   3e-28
Q65JQ0.1 RS16_BACLD 30S ribosomal protein S16                         112   1e-23
C5D8U1.1 C5D8U1_9BACI Ribosomal protein S16                           109   7e-23
P21474.3 RS16_BACSU 30S ribosomal protein S16                         109   7e-23

>B3KGJ0.1 B3KGJ0_9BACI Ribosomal protein S16
          Length = 90

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 64/70 (91%)

Query: 1  VVSDSRSPRDGRFIEEIGYYNPIEVPAVVKIDEEKALKWLQTGAQASDTVRNLLSKAGVM 60
          VVSDSRSPRDGRFIEEIGYYNP+  PA VKIDEEKAL WLQ GAQASDTVRNLLSKAGVM
Sbjct: 21 VVSDSRSPRDGRFIEEIGYYNPVAQPAEVKIDEEKALNWLQNGAQASDTVRNLLSKAGVM 80

Query: 61 KKFHELKQQK 70
          KKFHELK QK
Sbjct: 81 KKFHELKHQK 90


>B1DME7.1 B1DME7_9BACL Ribosomal protein S16
          Length = 90

 Score =  127 bits (320), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1  VVSDSRSPRDGRFIEEIGYYNPIEVPAVVKIDEEKALKWLQTGAQASDTVRNLLSKAGVM 60
          VVS+SRSPRDGRFIEEIG YNP+  PA V IDEEKALKWLQTGAQASDTVR+LLSKAGV+
Sbjct: 21 VVSNSRSPRDGRFIEEIGTYNPVAQPAQVTIDEEKALKWLQTGAQASDTVRDLLSKAGVL 80

Query: 61 KKFHELKQQK 70
          KKFHELKQQK
Sbjct: 81 KKFHELKQQK 90


>Q65JQ0.1 RS16_BACLD 30S ribosomal protein S16
          Length = 90

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 58/70 (82%)

Query: 1  VVSDSRSPRDGRFIEEIGYYNPIEVPAVVKIDEEKALKWLQTGAQASDTVRNLLSKAGVM 60
          VV+DSRSPRDGRFIE +G YNP+  PA VKIDEE ALKWLQTGA+ SDTVRNL SK G+M
Sbjct: 21 VVADSRSPRDGRFIETVGTYNPLAKPAEVKIDEELALKWLQTGAKPSDTVRNLFSKEGIM 80

Query: 61 KKFHELKQQK 70
          +KFH  KQ K
Sbjct: 81 EKFHNAKQSK 90


>C5D8U1.1 C5D8U1_9BACI Ribosomal protein S16
          Length = 90

 Score =  109 bits (273), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 58/70 (82%)

Query: 1  VVSDSRSPRDGRFIEEIGYYNPIEVPAVVKIDEEKALKWLQTGAQASDTVRNLLSKAGVM 60
          VV+DSRSPRDGRFIE IG YNPI  PA +KIDEE ALKWLQ GA+ SDTVRNLLSK G++
Sbjct: 21 VVADSRSPRDGRFIETIGTYNPITEPAEIKIDEELALKWLQNGAKPSDTVRNLLSKQGIL 80

Query: 61 KKFHELKQQK 70
          +KFH LK  K
Sbjct: 81 EKFHNLKYGK 90


>P21474.3 RS16_BACSU 30S ribosomal protein S16
          Length = 90

 Score =  109 bits (273), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 57/70 (81%)

Query: 1  VVSDSRSPRDGRFIEEIGYYNPIEVPAVVKIDEEKALKWLQTGAQASDTVRNLLSKAGVM 60
          VV+DSRSPRDGRFIE +G YNP+  PA VKIDEE ALKWLQTGA+ SDTVRNL S  G+M
Sbjct: 21 VVADSRSPRDGRFIETVGTYNPVAKPAEVKIDEELALKWLQTGAKPSDTVRNLFSSQGIM 80

Query: 61 KKFHELKQQK 70
          +KFH  KQ K
Sbjct: 81 EKFHNAKQGK 90


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 410,476,961
Number of extensions: 12838567
Number of successful extensions: 31244
Number of sequences better than 1.0e-05: 1052
Number of HSP's gapped: 31374
Number of HSP's successfully gapped: 1052
Length of query: 70
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 29
Effective length of database: 2,674,434,588
Effective search space: 77558603052
Effective search space used: 77558603052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)