BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0529.0016.p (461 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGJ1.1 B3KGJ1_9BACI Signal recognition particle protein 741 0.0 B1DME6.1 B1DME6_9BACL Signal recognition particle protein 682 0.0 C0ZFN6.1 C0ZFN6_BREBN Signal recognition particle protein fifty-... 618 e-175 B7GGE4.1 B7GGE4_ANOFW Signal recognition particle GTPase 603 e-170 Q9KA10.1 Q9KA10_BACHD Signal recognition particle 600 e-170 >B3KGJ1.1 B3KGJ1_9BACI Signal recognition particle protein Length = 460 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/423 (86%), Positives = 389/423 (91%) Query: 1 MAFEGLTGRLQNVFSKLRGKGKVSEDDVNEAMREVRLALLEADVNXXXXXXXXXXXXXXX 60 MAFEGLT RLQNVFSKLRGKGKVSE+DV AMREVRLALLEADVN Sbjct: 1 MAFEGLTSRLQNVFSKLRGKGKVSEEDVTAAMREVRLALLEADVNFKVVKDFVSKVKEKA 60 Query: 61 IGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSNKPPTVIMMAGLQGAGKTTTSGK 120 IGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSNKPPTVIMMAGLQGAGKTTTSGK Sbjct: 61 IGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSNKPPTVIMMAGLQGAGKTTTSGK 120 Query: 121 LAKLLQKGNHRPLLVAGDIYRPAAIKQLQILGEQIKVPVFTLGDQTSPVEIARQAVQHAK 180 LAKLLQK N +PLLVAGDIYRPAAIKQL++LG QI VPVF+LGD+TSPVEIA+Q +QHAK Sbjct: 121 LAKLLQKQNSKPLLVAGDIYRPAAIKQLEVLGNQINVPVFSLGDKTSPVEIAKQGLQHAK 180 Query: 181 DNNLDYVIIDTAGRLHIDEELMEELKQIHTVTNPDEVLLVVDAMTGQDAVNVADSFNKQL 240 DN DYVIIDTAGRLH+DEELMEELKQIH+V NPDEVLLVVDAMTGQDAVNVA+SFN+QL Sbjct: 181 DNGHDYVIIDTAGRLHVDEELMEELKQIHSVVNPDEVLLVVDAMTGQDAVNVAESFNQQL 240 Query: 241 ELTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGDM 300 LTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGDM Sbjct: 241 TLTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGDM 300 Query: 301 LSLIEKAQANIDTEKAKEMERKMRNAEFTFDDFLEQMDQVKKLGPIDQILDMLPGMNKAK 360 LSLIEKAQ+NID +KAKEMERKMRNAEFTF+DFLEQMDQVKKLGP+DQ++DM+PGM K K Sbjct: 301 LSLIEKAQSNIDADKAKEMERKMRNAEFTFEDFLEQMDQVKKLGPLDQLMDMIPGMGKMK 360 Query: 361 GMKDLKVDDKQMGRVEAIVHSMTKAEKAQPEIINHNRRKRIAAGSGTNVAEVNRLIKQFD 420 KDLKVD+KQMGR+EAIVHSMT AEK QP+IINHNRRKRIAAGSGT++AEVNRLIKQFD Sbjct: 361 QAKDLKVDEKQMGRIEAIVHSMTTAEKQQPDIINHNRRKRIAAGSGTSLAEVNRLIKQFD 420 Query: 421 EMR 423 EMR Sbjct: 421 EMR 423 >B1DME6.1 B1DME6_9BACL Signal recognition particle protein Length = 462 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/423 (78%), Positives = 374/423 (88%), Gaps = 1/423 (0%) Query: 2 AFEGLTGRLQNVFSKLRGKGKVSEDDVNEAMREVRLALLEADVNXXXXXXXXXXXXXXXI 61 AFE LT RLQNVFSKLRGKGKV+E+D+NEAMREVRLALLEADVN + Sbjct: 3 AFESLTNRLQNVFSKLRGKGKVTEEDLNEAMREVRLALLEADVNFKVVKDFIAKVKEKAL 62 Query: 62 GKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSNKPPTVIMMAGLQGAGKTTTSGKL 121 G +V SFTPGMV+IDIVNKELTELMGG+Q+KLAK+NKPPTVIMM GLQGAGKTTT+ KL Sbjct: 63 GLDVSKSFTPGMVVIDIVNKELTELMGGTQSKLAKANKPPTVIMMVGLQGAGKTTTTAKL 122 Query: 122 AKLLQKGNHRPLLVAGDIYRPAAIKQLQILGEQIKVPVFTLGDQTSPVEIARQAVQHAKD 181 AKLLQKGN +PLLVA DIYRPAAIKQLQ+LGEQI PVF+LGDQTSPVEIA+ + HA++ Sbjct: 123 AKLLQKGNSKPLLVACDIYRPAAIKQLQVLGEQINAPVFSLGDQTSPVEIAKAGLAHARE 182 Query: 182 NNLDYVIIDTAGRLHIDEELMEELKQIHTVTNPDEVLLVVDAMTGQDAVNVADSFNKQLE 241 N+ DYVI DTAGRLHIDE LMEELKQIH PDEVLLVVDAMTGQDAVNVA SF++QLE Sbjct: 183 NHNDYVIFDTAGRLHIDEALMEELKQIHQNVKPDEVLLVVDAMTGQDAVNVAQSFHEQLE 242 Query: 242 LTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGDML 301 LTGVVLTKLDGDTRGGAALSVKAVTG PIKFAA+GEKIDALEPFHP+RMASRILGMGDML Sbjct: 243 LTGVVLTKLDGDTRGGAALSVKAVTGKPIKFAAMGEKIDALEPFHPDRMASRILGMGDML 302 Query: 302 SLIEKAQANIDTEKAKEMERKMRNAEFTFDDFLEQMDQVKKLGPIDQILDMLPGMNKAKG 361 SLIEKAQANID +KA EMERKMR AEFTFDDFLEQM Q++ LGP+DQ++DMLPGMNK KG Sbjct: 303 SLIEKAQANIDADKAAEMERKMRTAEFTFDDFLEQMAQIRNLGPLDQLMDMLPGMNKMKG 362 Query: 362 -MKDLKVDDKQMGRVEAIVHSMTKAEKAQPEIINHNRRKRIAAGSGTNVAEVNRLIKQFD 420 MKD+KVD+KQ+ RVEAIV SMTKAEK +PE++NH+RRKR+AAGSGT++ EVNRLIKQF+ Sbjct: 363 NMKDMKVDEKQINRVEAIVRSMTKAEKQKPELLNHSRRKRVAAGSGTSITEVNRLIKQFE 422 Query: 421 EMR 423 +MR Sbjct: 423 DMR 425 >C0ZFN6.1 C0ZFN6_BREBN Signal recognition particle protein fifty-four homolog Length = 470 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 304/423 (71%), Positives = 355/423 (83%), Gaps = 2/423 (0%) Query: 1 MAFEGLTGRLQNVFSKLRGKGKVSEDDVNEAMREVRLALLEADVNXXXXXXXXXXXXXXX 60 MAFE L RLQN F KLRG+GK+ E VNEAMREVRLALLEADVN Sbjct: 1 MAFESLANRLQNAFDKLRGRGKIDETIVNEAMREVRLALLEADVNFKVVKDFVARVKERA 60 Query: 61 IGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSNKPPTVIMMAGLQGAGKTTTSGK 120 +G+EVM S TPG ++I IVN+EL LMGG+ A+L +++PPTVIMMAGLQGAGKTTT+GK Sbjct: 61 VGQEVMKSLTPGQMVIKIVNEELVALMGGNVAQLTMAHRPPTVIMMAGLQGAGKTTTTGK 120 Query: 121 LAKLLQKGNHRPLLVAGDIYRPAAIKQLQILGEQIKVPVFTLGDQTSPVEIARQAVQHAK 180 LAK LQK N +PLLVAGDIYRPAAIKQLQ+LGEQ+ VPVFTLGDQ SPVEIARQA++HAK Sbjct: 121 LAKYLQKQNRKPLLVAGDIYRPAAIKQLQVLGEQLNVPVFTLGDQVSPVEIARQAIEHAK 180 Query: 181 DNNLDYVIIDTAGRLHIDEELMEELKQIHTVTNPDEVLLVVDAMTGQDAVNVADSFNKQL 240 N+LD V+IDTAGRLHIDE LM+ELKQI VT PDE+LLVVDAMTGQDAVNVA+SFN QL Sbjct: 181 TNHLDVVLIDTAGRLHIDEALMDELKQIREVTKPDEILLVVDAMTGQDAVNVAESFNSQL 240 Query: 241 ELTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGDM 300 ELTGVVLTKLDGDTRGGAALSVKAVTG PIKFAA+GEK+DALEPFHP+RMASRILGMGD+ Sbjct: 241 ELTGVVLTKLDGDTRGGAALSVKAVTGKPIKFAAMGEKLDALEPFHPDRMASRILGMGDV 300 Query: 301 LSLIEKAQANIDTEKAKEMERKMRNAEFTFDDFLEQMDQVKKLGPIDQILDMLPGMNKAK 360 LSLIEKAQA++D +KA++MER+MR EFTFD FL+ M Q++ LGP + IL MLPGMNK K Sbjct: 301 LSLIEKAQASVDEDKARDMERQMRQGEFTFDMFLDSMQQLRNLGPFEDILGMLPGMNKMK 360 Query: 361 GMKDLKVDDKQMGRVEAIVHSMTKAEKAQPEIINHNRRKRIAAGSGTNVAEVNRLIKQFD 420 G + VD+KQ+ RVEAI SMTK E+A P+++N +RRKRIA+GSGT++ EVNR +KQF+ Sbjct: 361 G--KMNVDEKQIARVEAIAKSMTKQERANPDLLNASRRKRIASGSGTSIQEVNRFLKQFE 418 Query: 421 EMR 423 EM+ Sbjct: 419 EMK 421 >B7GGE4.1 B7GGE4_ANOFW Signal recognition particle GTPase Length = 446 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 294/422 (69%), Positives = 349/422 (82%), Gaps = 1/422 (0%) Query: 1 MAFEGLTGRLQNVFSKLRGKGKVSEDDVNEAMREVRLALLEADVNXXXXXXXXXXXXXXX 60 MAFEGL RLQ+V +K+RGKGKV+E DV E MREVRLALLEADVN Sbjct: 1 MAFEGLADRLQHVMNKIRGKGKVTEADVKEMMREVRLALLEADVNFKVVKDFVKKVSERA 60 Query: 61 IGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSNKPPTVIMMAGLQGAGKTTTSGK 120 +G+EVM S TPG +I +V +ELTELMGG +K+A SN+PPTV+MM GLQGAGKTTT+GK Sbjct: 61 VGQEVMKSLTPGQQVIKVVKEELTELMGGENSKIAVSNRPPTVVMMVGLQGAGKTTTTGK 120 Query: 121 LAKLL-QKGNHRPLLVAGDIYRPAAIKQLQILGEQIKVPVFTLGDQTSPVEIARQAVQHA 179 LA LL +K N +PLLVA DIYRPAAIKQL+ LG+Q+ +PVF+LGDQ SPVEIA+QA+ A Sbjct: 121 LANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQLNIPVFSLGDQVSPVEIAKQAIAKA 180 Query: 180 KDNNLDYVIIDTAGRLHIDEELMEELKQIHTVTNPDEVLLVVDAMTGQDAVNVADSFNKQ 239 K+ + DYV+IDTAGRLHIDE LM+ELKQI VT PDE+ LVVDAMTGQDAVNVA SFN+Q Sbjct: 181 KEEHYDYVLIDTAGRLHIDEALMDELKQIKEVTKPDEIFLVVDAMTGQDAVNVAQSFNEQ 240 Query: 240 LELTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGD 299 L LTGV+LTKLDGDTRGGAALS+KAVT PIKF +GEK+DALEPFHPERMASRILGMGD Sbjct: 241 LGLTGVILTKLDGDTRGGAALSIKAVTNTPIKFVGMGEKLDALEPFHPERMASRILGMGD 300 Query: 300 MLSLIEKAQANIDTEKAKEMERKMRNAEFTFDDFLEQMDQVKKLGPIDQILDMLPGMNKA 359 +L+LIEKAQA +D EKAKE+E+KMR A FT DDFLEQ+ QV+KLGP+D++L MLPG NK Sbjct: 301 VLTLIEKAQAAVDEEKAKELEQKMRTASFTLDDFLEQLGQVRKLGPLDELLKMLPGANKV 360 Query: 360 KGMKDLKVDDKQMGRVEAIVHSMTKAEKAQPEIINHNRRKRIAAGSGTNVAEVNRLIKQF 419 KG+ +L++D+KQ+ RVEAI+ SMTK EK P+IIN +R+KRIA GSGT V +VNRL+KQF Sbjct: 361 KGLNNLQIDEKQISRVEAIIRSMTKEEKMNPDIINSSRKKRIAKGSGTTVQDVNRLLKQF 420 Query: 420 DE 421 DE Sbjct: 421 DE 422 >Q9KA10.1 Q9KA10_BACHD Signal recognition particle Length = 451 Score = 600 bits (1547), Expect = e-170, Method: Compositional matrix adjust. Identities = 289/424 (68%), Positives = 355/424 (83%), Gaps = 1/424 (0%) Query: 1 MAFEGLTGRLQNVFSKLRGKGKVSEDDVNEAMREVRLALLEADVNXXXXXXXXXXXXXXX 60 MAFE L RLQ+ K+RGKGKVSE DV E MREVRLALLEADVN Sbjct: 1 MAFESLAERLQDTLKKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKQFIANVKEKA 60 Query: 61 IGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSNKPPTVIMMAGLQGAGKTTTSGK 120 +G+EVM S TPG +I +VN+ELT LMGG Q+K+A ++KPPTV+MM GLQGAGKTTT+ K Sbjct: 61 LGQEVMKSLTPGQQVIKVVNEELTALMGGEQSKIAVASKPPTVVMMVGLQGAGKTTTTAK 120 Query: 121 LAKLLQKGNHR-PLLVAGDIYRPAAIKQLQILGEQIKVPVFTLGDQTSPVEIARQAVQHA 179 LA L+K ++R P+LVA DIYRPAAIKQL+ LG+Q+ +PVF+LGDQ SPVEIA+QA++ A Sbjct: 121 LANHLRKKHNRNPILVAADIYRPAAIKQLETLGKQLNMPVFSLGDQVSPVEIAKQAIERA 180 Query: 180 KDNNLDYVIIDTAGRLHIDEELMEELKQIHTVTNPDEVLLVVDAMTGQDAVNVADSFNKQ 239 K+ + DYV+IDTAGRLHIDEELM+EL+Q+ V PDE+LLVVDAMTGQDAVNVA+SF++Q Sbjct: 181 KEEHHDYVLIDTAGRLHIDEELMDELQQVKEVAKPDEILLVVDAMTGQDAVNVAESFHEQ 240 Query: 240 LELTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGD 299 L+++GVVLTKLDGDTRGGAALSVKAVT PIKFA +GEKID LEPFHPERMASRILGMGD Sbjct: 241 LDVSGVVLTKLDGDTRGGAALSVKAVTNTPIKFAGMGEKIDQLEPFHPERMASRILGMGD 300 Query: 300 MLSLIEKAQANIDTEKAKEMERKMRNAEFTFDDFLEQMDQVKKLGPIDQILDMLPGMNKA 359 +L+LIEKAQ+ +D EKA+E+E+KMR +FTFDDFLEQ+DQV+ +GP+D++L M+PGMNKA Sbjct: 301 VLTLIEKAQSTVDEEKARELEKKMRTMDFTFDDFLEQLDQVRSMGPLDELLGMMPGMNKA 360 Query: 360 KGMKDLKVDDKQMGRVEAIVHSMTKAEKAQPEIINHNRRKRIAAGSGTNVAEVNRLIKQF 419 KG+K+L+VD+KQ+ RVEAIV SMTK EK P IIN +RR+RIA GSGT + +VNRL+KQF Sbjct: 361 KGLKNLQVDEKQISRVEAIVRSMTKQEKQDPSIINASRRRRIAKGSGTAIQDVNRLLKQF 420 Query: 420 DEMR 423 +EM+ Sbjct: 421 EEMK 424 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,253,422,469 Number of extensions: 88583405 Number of successful extensions: 373760 Number of sequences better than 1.0e-05: 4030 Number of HSP's gapped: 366234 Number of HSP's successfully gapped: 4031 Length of query: 461 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 322 Effective length of database: 1,751,175,118 Effective search space: 563878387996 Effective search space used: 563878387996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)