BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0015.p
         (118 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGJ2.1 B3KGJ2_9BACI Putative helix-turn-helix protein YlxM/p13...   168   2e-40
B1DME5.1 B1DME5_9BACL Putative helix-turn-helix protein YlxM/p13...   127   3e-28
A0AJQ7.1 Y1821_LISW6 UPF0122 protein lwe1821                          110   4e-23
Q92AK6.1 Y1916_LISIN UPF0122 protein lin1916                          110   4e-23
C1KWA1.1 C1KWA1_LISMC Putative uncharacterized protein                109   7e-23

>B3KGJ2.1 B3KGJ2_9BACI Putative helix-turn-helix protein YlxM/p13 family
           protein
          Length = 118

 Score =  168 bits (425), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 97/115 (84%)

Query: 1   MSQENRLEKTNRINLLFAFYERLLTDKQQTFLKYYFHDDFSLGEIAAEFEISRQAVYEHI 60
           MSQENRLEKTNRINLLF FYE+LLT+KQQTFLKYYFHDDFSLGEIA EFEISRQAVYEHI
Sbjct: 1   MSQENRLEKTNRINLLFDFYEQLLTEKQQTFLKYYFHDDFSLGEIAGEFEISRQAVYEHI 60

Query: 61  KRAEQVLENYEEKLGLLEKHESRSKYLEELRRLPENGMLPEQYTLRFTELVDRLQ 115
           KRAEQVLE+YEEKLGLL KHE+R + L++ R + E   L E      T++V+RL+
Sbjct: 61  KRAEQVLESYEEKLGLLSKHEARVRELDKFREMVETSDLDEHDKHVMTDMVERLK 115


>B1DME5.1 B1DME5_9BACL Putative helix-turn-helix protein YlxM/p13 family
          protein
          Length = 133

 Score =  127 bits (319), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 71/90 (78%)

Query: 3  QENRLEKTNRINLLFAFYERLLTDKQQTFLKYYFHDDFSLGEIAAEFEISRQAVYEHIKR 62
          + + L KT RINLLF FYE LLT+KQ+TFLKYYFHDD+SLGEIAAE  ISRQAVYEH+KR
Sbjct: 5  EPDALAKTTRINLLFDFYEPLLTEKQRTFLKYYFHDDYSLGEIAAESGISRQAVYEHVKR 64

Query: 63 AEQVLENYEEKLGLLEKHESRSKYLEELRR 92
          AEQVLE YE KL L+ KHES  K    L R
Sbjct: 65 AEQVLEGYEAKLSLVAKHESMQKLAAGLER 94


>A0AJQ7.1 Y1821_LISW6 UPF0122 protein lwe1821
          Length = 110

 Score =  110 bits (276), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 7   LEKTNRINLLFAFYERLLTDKQQTFLKYYFHDDFSLGEIAAEFEISRQAVYEHIKRAEQV 66
            EKTNR+NLLF FY+ LLT KQ+ ++ +Y+ DD+SLGEIA EFE+SRQA+Y++IKR E+ 
Sbjct: 2   FEKTNRMNLLFDFYQELLTTKQKAYVSFYYLDDYSLGEIAEEFEVSRQAIYDNIKRTEES 61

Query: 67  LENYEEKLGLLEKHESRSKYLEELR-RLPENGMLPEQ 102
           LE YEEKLG+L+K++ R K   EL  +L +   L EQ
Sbjct: 62  LEKYEEKLGMLKKYQQREKLFSELEAQLTKKNFLDEQ 98


>Q92AK6.1 Y1916_LISIN UPF0122 protein lin1916
          Length = 110

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 75/97 (77%), Gaps = 1/97 (1%)

Query: 7   LEKTNRINLLFAFYERLLTDKQQTFLKYYFHDDFSLGEIAAEFEISRQAVYEHIKRAEQV 66
            EKTNR+NLLF FY+ LLT KQ++++ +Y+ DD+SLGEIA EFE+SRQA+Y++IKR E+ 
Sbjct: 2   FEKTNRMNLLFDFYQELLTTKQKSYVSFYYLDDYSLGEIAEEFEVSRQAIYDNIKRTEES 61

Query: 67  LENYEEKLGLLEKHESRSKYLEELR-RLPENGMLPEQ 102
           LE YEEKLG+L K++ R K  ++L  +L +   L EQ
Sbjct: 62  LEKYEEKLGMLRKYQQREKLFDQLEAQLTKKNFLDEQ 98


>C1KWA1.1 C1KWA1_LISMC Putative uncharacterized protein
          Length = 110

 Score =  109 bits (273), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 7   LEKTNRINLLFAFYERLLTDKQQTFLKYYFHDDFSLGEIAAEFEISRQAVYEHIKRAEQV 66
            EKTNR+NLLF FY+ LLT KQ+ ++ +Y+ DD+SLGEIA EFE+SRQA+Y++IKR E+ 
Sbjct: 2   FEKTNRMNLLFDFYQELLTTKQKAYVSFYYLDDYSLGEIAEEFEVSRQAIYDNIKRTEES 61

Query: 67  LENYEEKLGLLEKHESRSKYLEELR-RLPENGMLPEQ 102
           LE YEEKLG+L+K++ R K   +L  +L +   L EQ
Sbjct: 62  LEKYEEKLGMLKKYQQREKLFSQLEAQLTKKNFLDEQ 98


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 655,997,613
Number of extensions: 24292287
Number of successful extensions: 118926
Number of sequences better than 1.0e-05: 381
Number of HSP's gapped: 118924
Number of HSP's successfully gapped: 381
Length of query: 118
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 34
Effective length of database: 2,269,330,943
Effective search space: 77157252062
Effective search space used: 77157252062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)