BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0529.0013.p (419 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJJ4.1 B3KJJ4_9BACI Copper amine oxidase domain protein 343 2e-92 B1DI23.1 B1DI23_9BACL Copper amine oxidase domain protein 320 2e-85 B7R693.1 B7R693_9THEO Copper amine oxidase N-terminal domain family 249 3e-64 Q8R6W5.1 Q8R6W5_THETN Putative uncharacterized protein 247 1e-63 B1I2L9.1 B1I2L9_DESAP Copper amine oxidase domain protein 235 5e-60 >B3KJJ4.1 B3KJJ4_9BACI Copper amine oxidase domain protein Length = 424 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 185/404 (45%), Positives = 245/404 (60%), Gaps = 6/404 (1%) Query: 7 KWLAKIVLCAAVTAAGFTSLPAEGVKAAAGGVSIVLDGYPLPFPVEPAVMSGTTMVPFRA 66 K + K + A + + + P G AA +S+ LD L F P + G T VPFR Sbjct: 4 KPIGKTAVAAVLALSLLGTAPHIGQVQAAPAISVKLDDVALTFDAAPRIDKGVTYVPFRT 63 Query: 67 ISEALGVKVEWNQAAKQITATHKEASGTQKVILTLGSKSASVNGSAVKLAVAPQNIRGTT 126 + EALG+++ WN + + A + T +V+L +GS SA+VNG VKLA P G Sbjct: 64 VGEALGIQITWNSKTQTVKAIGEVKGQTTEVLLQVGSSSATVNGKKVKLAAPPVQREGRV 123 Query: 127 MIPLSFFGQQFGAGVAWNQATKTVSITSPKKDLYTLGFYAQGAYSEVSLIPDFDAVAFGW 186 +IPLS F QFG V WNQAT+TVS+ SP+++++ FYA ++ E L+ ++VAFGW Sbjct: 124 LIPLSSFSSQFGVNVGWNQATRTVSLVSPQREMHLRAFYALQSFQERDLVASMNSVAFGW 183 Query: 187 SRIDRSGQYTTSGTEFRWPQAAGDVTPESIVQNAAAGGTAPYLMVYSGDKELELTKNVEN 246 SRIDR GQ+T G E+R P AAGDVTP+SIV +AA PYLMVY+ D ELTK + + Sbjct: 184 SRIDREGQFTLQGDEYRLPAAAGDVTPQSIVADAADREIKPYLMVYALDGNGELTKVLSD 243 Query: 247 LQLQQQTIAGIVDTATQKGFRGIALDLEGLGMTGDKAVVQSQYNTFVXXXXXXXXXXXXX 306 L+Q++I GI GF G+ LD EGLG D A Q N +V Sbjct: 244 SSLRQKSIEGITTAVADNGFGGVVLDFEGLGFKLDAAKQQKLLNDYV-KQLKAALPSDIA 302 Query: 307 XTVILHPLNSSYKGYDYKTLATIADDLVIMAYAYE----GETGPEPMNKVDESIRLALQQ 362 ++ + PLNS+YKGYDYKTLA++ADDL++MAY Y PEP + VD++I+ ALQ Sbjct: 303 LSLAVPPLNSAYKGYDYKTLASLADDLIVMAYQYNPVGTKAQVPEPNSLVDQAIQQALQA 362 Query: 363 -VSKDKLILGISVYSENETSVNAKIGLAKRYGLKGIAIWRLGLI 405 V K KL+LGIS+ SE TSV+ K+GLAKRY LKG A WRLGL Sbjct: 363 GVPKQKLLLGISLSSETATSVDDKLGLAKRYDLKGAAFWRLGLF 406 >B1DI23.1 B1DI23_9BACL Copper amine oxidase domain protein Length = 436 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 167/375 (44%), Positives = 237/375 (63%), Gaps = 7/375 (1%) Query: 39 SIVLDGYPLPFPVEPAVMSGTTMVPFRAISEALGV-KVEWNQAAKQITATHKEASGTQKV 97 +I+LD LPF P ++ G T VPFR I EALG+ KV W++ + +TA + K+ Sbjct: 47 TILLDDVELPFDSPPIIVKGVTFVPFRTIGEALGLQKVVWDEKTQTVTAEGSKQGKAVKL 106 Query: 98 ILTLGSKSASVNGSAVKLAVAPQNIRGTTMIPLSFFGQQFGAGVAWNQATKTVSITSPKK 157 + +GS +A VNG+ VKL P +IPLSFF QFGA V W+Q+T TV+I SP+K Sbjct: 107 SMKIGSGTAVVNGTNVKLPAEPMMRNNRVLIPLSFFSTQFGAQVGWSQSTNTVTIKSPQK 166 Query: 158 DLYTLGFYAQGAYSEVSLIPDFDAVAFGWSRIDRSGQYTTSGTEFRWPQAAGDVTPESIV 217 ++ FYA +++E L+ ++VA+GWSRIDR G +T G+E+R P+ +GD+TP+S+V Sbjct: 167 AMHLRTFYALSSFAERDLVNSANSVAYGWSRIDRDGNFTLEGSEYRVPEPSGDITPQSLV 226 Query: 218 QNAAAGGTAPYLMVYSGDKELELTKNVENLQLQQQTIAGIVDTATQKGFRGIALDLEGLG 277 +AA PYLMVYS D + ELT + + L+ +I+GI + GF G+ LD EGLG Sbjct: 227 SDAADKSIKPYLMVYSLDGQNELTTMMGSENLRANSISGITKAISDYGFGGVVLDFEGLG 286 Query: 278 MTGDKAVVQSQYNTFVXXXXXXXXXXXXXXTVILHPLNSSYKGYDYKTLATIADDLVIMA 337 DK Q N++V ++++H NS+Y+GYDYKTLA++ADDLV+MA Sbjct: 287 FQMDKVEQQKLLNSYV-KQLKDALPKDVALSLVVHAPNSAYQGYDYKTLASLADDLVLMA 345 Query: 338 YAYE----GETGPEPMNKVDESIRLALQQ-VSKDKLILGISVYSENETSVNAKIGLAKRY 392 Y Y P P NKV+E+I++AL+ V K KL+LGI + +E S++ K+GLAKRY Sbjct: 346 YKYNPSGTASQVPNPNNKVNEAIQMALKAGVPKSKLLLGIDLSAETPQSIDDKLGLAKRY 405 Query: 393 GLKGIAIWRLGLIGQ 407 LKG A+WRLGL G+ Sbjct: 406 QLKGAALWRLGLYGK 420 >B7R693.1 B7R693_9THEO Copper amine oxidase N-terminal domain family Length = 424 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/410 (37%), Positives = 231/410 (56%), Gaps = 34/410 (8%) Query: 27 PAEGVKAAAGGVSIVLDGYPLPFPVEPAVMSGTTMVPFRAISEALGVKVEWNQAAKQITA 86 P EG A ++++LDGYP+ F +P + GTT+VPFRAI+EAL V V+WN+A++ +TA Sbjct: 25 PIEGY-AKEKEINVLLDGYPIEFDTKPVLEEGTTLVPFRAIAEALNVNVDWNEASQTVTA 83 Query: 87 THKEASGTQKVILTLGSKSASVNGSAVKLAVAPQNIRGTTMIPLSFFGQQFGAGVAWNQA 146 T+K + V L +G+K A N + KL VAP+ + +IPL FF + FG V W Q Sbjct: 84 TYKNSI----VKLQVGNKIAYKNNTPFKLLVAPKIVNNRVLIPLRFFSEAFGFDVKWEQE 139 Query: 147 TKTVSITSPKKDLYTLGFYAQGAYSEVSLI-------PDFD--------AVAFGWSRIDR 191 T TV I SP +++ +GFYA G S P++D ++A GW +D Sbjct: 140 TYTVKINSPAREMSVIGFYALGDEKTSSWTNLFGKKYPEYDTGNTQYFTSIALGWYSLDS 199 Query: 192 SGQY-TTSGTEFRWPQAAGDVTPESIVQNAAAGGTAPYLMVYSGDKELELTKNVENLQLQ 250 SG T S T ++ P+ E +++ + ++++ D + L+ + + + Sbjct: 200 SGNLLTKSSTGWQRPEGW-----EKVLEALSKYKLKSEMVLHVTDGDGTLSNLLFSDEAV 254 Query: 251 QQTIAGIVDTATQKGFRGIALDLEGLGMTG---DKAVVQSQYNTFVXXXXXXXXXXXXXX 307 ++ I+ I + A K + GI LD EGLG+T D A ++ ++ FV Sbjct: 255 RKAISAISEEA--KLYDGINLDFEGLGLTEKEEDIAKIKEKFTEFVELLREKIGSSKTI- 311 Query: 308 TVILHPLNSSYKGYDYKTLATIADDLVIMAYAYEGETGPEPMNKVDESIRLALQQVSKDK 367 T+ LH NS+YKGYDYK L +AD +++MAY Y G+ PEP V ++I L++V K+K Sbjct: 312 TLTLHAPNSAYKGYDYKLLGQVADKIIVMAYDY-GQK-PEPEKLVIQAIEETLKEVPKEK 369 Query: 368 LILGISVYSENETSVNAKIGLAKRYGLKGIAIWRLGLIGQPVWSEMGKSV 417 +ILGIS+ SE S K+GLAKRYGL GIA+WRLGLI +W + S+ Sbjct: 370 VILGISIPSETPESFAIKVGLAKRYGLNGIALWRLGLINDEMWEVLKTSI 419 >Q8R6W5.1 Q8R6W5_THETN Putative uncharacterized protein Length = 422 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 226/399 (56%), Gaps = 33/399 (8%) Query: 38 VSIVLDGYPLPFPVEPAVMSGTTMVPFRAISEALGVKVEWNQAAKQITATHKEASGTQKV 97 ++++LDGYP+ F +P + GTT+VPFRAI+EAL V V+WN ++ +TAT+K + V Sbjct: 33 ITVILDGYPIEFDTKPLLEEGTTLVPFRAIAEALNVNVDWNDTSQTVTATYKNSI----V 88 Query: 98 ILTLGSKSASVNGSAVKLAVAPQNIRGTTMIPLSFFGQQFGAGVAWNQATKTVSITSPKK 157 L +G+K A N + KL VAP+ + +IPL FF + FG V W Q T TV I SP + Sbjct: 89 KLQVGNKIAYKNNTPFKLLVAPKIVNNRVLIPLRFFSEAFGFDVKWEQETYTVKINSPAR 148 Query: 158 DLYTLGFYAQGAYSEVSLI-------PDFD--------AVAFGWSRIDRSGQY-TTSGTE 201 ++ +GFYA G S P++D ++A GW +D SG T S T Sbjct: 149 EMSVIGFYALGDEKTSSWTNLFGKKYPEYDTGNTQHFTSIALGWYSLDSSGNLLTKSSTG 208 Query: 202 FRWPQAAGDVTPESIVQNAAAGGTAPYLMVYSGDKELELTKNVENLQLQQQTIAGIVDTA 261 ++ P+ E++++ + ++V+ D + L+ + + + ++ I+ I + A Sbjct: 209 WQRPEGW-----ENVLEALSKYKLKSEMVVHVTDGDGTLSNLLFSDEAVRKAISAISEEA 263 Query: 262 TQKGFRGIALDLEGLGMTG---DKAVVQSQYNTFVXXXXXXXXXXXXXXTVILHPLNSSY 318 K + GI LD EGLG+T D A ++ ++ FV T+ LH NS+Y Sbjct: 264 --KLYDGINLDFEGLGLTEKEEDIAKIKEKFTEFVELLREKIGSSKTI-TLTLHAPNSAY 320 Query: 319 KGYDYKTLATIADDLVIMAYAYEGETGPEPMNKVDESIRLALQQVSKDKLILGISVYSEN 378 KGYDYK L +AD +++MAY Y G+ PEP V ++I L++V K+K+ILGIS+ SE Sbjct: 321 KGYDYKLLGQVADKIIVMAYDY-GQK-PEPEKLVIQAIEETLKEVPKEKVILGISIPSET 378 Query: 379 ETSVNAKIGLAKRYGLKGIAIWRLGLIGQPVWSEMGKSV 417 S K+GLAKRYGL GIA+WRLGLI +W + S+ Sbjct: 379 PESFAIKVGLAKRYGLNGIALWRLGLINDEMWKVLKTSI 417 >B1I2L9.1 B1I2L9_DESAP Copper amine oxidase domain protein Length = 426 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 136/414 (32%), Positives = 230/414 (55%), Gaps = 29/414 (7%) Query: 23 FTSLPAEGVKAAAGGVSIVLDGYPLPFPVEPAVMSGTTMVPFRAISEALGVKVEWNQAAK 82 F + P A + + ++LDG P+ F V P +++G T+VPFR I+EAL + V W+ + Sbjct: 21 FAAPPYRQAGAGSPEIIVLLDGLPVHFDVPPQIINGRTLVPFRLIAEALNISVSWDGTTR 80 Query: 83 QITATHKEASGTQKVILTLGSKSASVNGSAVKLAVAPQNIRGTTMIPLSFFGQQFGAGVA 142 ++A+ G ++VIL + + + VNGSA+ L AP I T+IPL FF + FG V Sbjct: 81 TVSASE----GGKQVILQIDNNTGIVNGSAIILDTAPVIIDSRTLIPLRFFSETFGCRVE 136 Query: 143 WNQATKTVSITSPKKDLYTLGFYAQG-----AYSEVSLIP-------DFDAV---AFGWS 187 W T+T+ I SP + +GFYA G +++ + +P + D V A GW Sbjct: 137 WAGETRTIKIASPPCSMNVIGFYALGDARTSSWTNLFGVPFPATGIGNTDIVRELALGWY 196 Query: 188 RIDRSGQYTTSGTEFRWPQAAGDVTPESIVQNAAAGGTAPYLMVYSGDKELELTKNVENL 247 ID G T W + AG E+++ A G ++++ ++ LT + + Sbjct: 197 TIDAEGNLLTRSPRTAWQRPAGW---ETVLATAREFGFRTEMVIHETNRGGLLTAFLNDE 253 Query: 248 QLQQQTIAGIVDTATQKGFRGIALDLEGLG--MTGD-KAVVQSQYNTFVXXXXXXXXXXX 304 Q + + IV A+ F G+ L+LE LG TG+ + ++ + FV Sbjct: 254 QAMSRAVDAIVQEASL--FDGVNLNLEELGPYATGETQQKIRDSFTNFVALLSPPLREAS 311 Query: 305 XXXTVILHPLNSSYKGYDYKTLATIADDLVIMAYAYEGETGPEPMNKVDESIRLALQQVS 364 T+ +HP NSS++GYDY+ L+ +AD +++MA+ Y + PEP+N+V +++ +AL V Sbjct: 312 KTITLTIHPPNSSFRGYDYQALSQLADRIIVMAHDYGPK--PEPLNRVVQAVEMALTVVP 369 Query: 365 KDKLILGISVYSENETSVNAKIGLAKRYGLKGIAIWRLGLIGQPVWSEMGKSVE 418 ++KL+L IS SE S+ AK+G+AKRY L+G+++WRLGL+ + +W+ + ++++ Sbjct: 370 REKLVLAISAPSETAESITAKVGIAKRYRLQGVSLWRLGLVTEGMWASLRQTIK 423 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,403,917,823 Number of extensions: 95317788 Number of successful extensions: 258383 Number of sequences better than 1.0e-05: 237 Number of HSP's gapped: 258243 Number of HSP's successfully gapped: 238 Length of query: 419 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 281 Effective length of database: 1,760,596,133 Effective search space: 494727513373 Effective search space used: 494727513373 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)