BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0011.p
         (84 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q8KNS9.1 Q8KNS9_BACTI Putative class-II aminotransferase EC=2.6.1.-   101   2e-20
C3IW29.1 C3IW29_BACTU Class-II aminotransferase                       101   2e-20
C5CID8.1 C5CID8_9THEM Aminotransferase class I and II                  98   2e-19
C5D706.1 C5D706_9BACI Aminotransferase class I and II                  97   4e-19
A4ISC4.1 A4ISC4_GEOTN Aminotransferase                                 97   7e-19

>Q8KNS9.1 Q8KNS9_BACTI Putative class-II aminotransferase EC=2.6.1.-
          Length = 387

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 57/76 (75%)

Query: 1  LKYDFNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIY 60
          +K DF++ IDR  T SYKWDQS+ LF  +DILP+WVADMDF SPPAV +A++ R   G+Y
Sbjct: 1  MKLDFDQQIDRLYTASYKWDQSKILFETEDILPMWVADMDFMSPPAVVNALINRATHGVY 60

Query: 61 GYSVTSDSYKSAIAGW 76
          GY++  DSY S+I  W
Sbjct: 61 GYTIIPDSYYSSIIDW 76


>C3IW29.1 C3IW29_BACTU Class-II aminotransferase
          Length = 387

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 57/76 (75%)

Query: 1  LKYDFNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIY 60
          +K DF++ IDR  T SYKWDQS+ LF  +DILP+WVADMDF SPPAV +A++ R   G+Y
Sbjct: 1  MKLDFDQQIDRLYTASYKWDQSKILFETEDILPMWVADMDFMSPPAVVNALINRATHGVY 60

Query: 61 GYSVTSDSYKSAIAGW 76
          GY++  DSY S+I  W
Sbjct: 61 GYTIIPDSYYSSIIDW 76


>C5CID8.1 C5CID8_9THEM Aminotransferase class I and II
          Length = 394

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 2  KYDFNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIYG 61
          KYDF++ IDRR T SYKWD  ++ FG +D++P+WVADMDFE+P  V +AI  R Q G YG
Sbjct: 3  KYDFDKFIDRRETNSYKWDYLDEAFGTRDLIPMWVADMDFEAPKPVIEAIKNRAQHGCYG 62

Query: 62 YSVTSDSYKSAIAGW 76
          Y+   DSY  +I  W
Sbjct: 63 YTARPDSYYESIMNW 77


>C5D706.1 C5D706_9BACI Aminotransferase class I and II
          Length = 386

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 53/74 (71%)

Query: 3  YDFNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIYGY 62
          Y F+ +IDRRNT S KWD +E++FG KD+LPLWVADMDF +P AV  A+  R+  GI+GY
Sbjct: 2  YSFDDVIDRRNTHSLKWDDTERVFGAKDVLPLWVADMDFPAPQAVIKALHERIAHGIFGY 61

Query: 63 SVTSDSYKSAIAGW 76
          +V   S K AI  W
Sbjct: 62 TVIPHSLKDAIKNW 75


>A4ISC4.1 A4ISC4_GEOTN Aminotransferase
          Length = 453

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 56/74 (75%)

Query: 3   YDFNRIIDRRNTRSYKWDQSEKLFGDKDILPLWVADMDFESPPAVKDAILRRVQEGIYGY 62
           + F+++IDRR T+S KWD  E+LFG KD+ P+WVADMDF +P AV++A+  R++ GI+GY
Sbjct: 69  FSFDQVIDRRGTQSVKWDDVERLFGHKDVWPMWVADMDFPAPKAVQEALQARIEHGIFGY 128

Query: 63  SVTSDSYKSAIAGW 76
           +V  DS K A+  W
Sbjct: 129 TVIPDSLKEAVGEW 142


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 500,976,626
Number of extensions: 17028469
Number of successful extensions: 36616
Number of sequences better than 1.0e-05: 748
Number of HSP's gapped: 36228
Number of HSP's successfully gapped: 748
Length of query: 84
Length of database: 3,060,696,203
Length adjustment: 54
Effective length of query: 30
Effective length of database: 2,551,961,393
Effective search space: 76558841790
Effective search space used: 76558841790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)