BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0529.0005.p (2572 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D969.1 B1D969_9BACL Cellulosome anchoring protein cohesin region 126 3e-26 B1DD79.1 B1DD79_9BACL Metallophosphoesterase 124 1e-25 Q0B064.1 Q0B064_SYNWW Putative uncharacterized protein 119 4e-24 B3K5B4.1 B3K5B4_9BACI Endo-1,4-beta-xylanase EC=3.2.1.8 119 4e-24 C1TBX3.1 C1TBX3_9FIRM Putative molybodpterin-dependent oxidoredu... 118 1e-23 >B1D969.1 B1D969_9BACL Cellulosome anchoring protein cohesin region Length = 611 Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 107/186 (57%), Gaps = 4/186 (2%) Query: 2381 NAKAFKDIAKGFWAGPDISSASGKLFVLGTSADTFAPQAKITRAELPTILLRVAGLMN-N 2439 ++K F D+ WA DI+ + ++ + G SAD FAP +TRAE ILLR G+ Sbjct: 420 HSKTFADVTN-HWAKADINDLASRMVIQGVSADRFAPDRSVTRAEFTAILLRALGIHAPK 478 Query: 2440 TAAKQGFKDVAESSWYFRSVSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMVGRLLNVVS 2499 K F+DV ++WY +V A G++TG S+G++ P ++++R EA+ M+ R + Sbjct: 479 DDTKVSFRDVGATAWYHDAVVNAVSYGLITGYSDGSFHPNASISRQEAIVMINRSSAI-- 536 Query: 2500 SGGESMGDAEAAQILNAFADKGEIPAWAKSPIALSIKYGIIRGVNGKINPAGVLTRAEAA 2559 +G +E A +++ F DK I +WA + +A K GI++G NGK+ P +TRAE+A Sbjct: 537 TGLVQASASETAGLISPFNDKKNIDSWALAAVASGAKQGIVKGTNGKLLPKQPITRAESA 596 Query: 2560 AMANRL 2565 + R+ Sbjct: 597 VIMKRV 602 >B1DD79.1 B1DD79_9BACL Metallophosphoesterase Length = 2168 Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 119/232 (51%), Gaps = 10/232 (4%) Query: 2341 TAVVLKNAAGQWTTIP--WKPDSSGTAVDVQLTGEGSLFFINNAKAFKDIAKGFWAGPDI 2398 TAV+ A G +T +P +K + T V +Q G K F D++K WA DI Sbjct: 1941 TAVMYNEATGAFTFVPATFKKVNGHTIVTIQRNGNSIYAVAQLNKTFSDLSK-HWAKADI 1999 Query: 2399 SSASGKLFVLGTSADTFAPQAKITRAELPTILLRVAGLMNNTAAKQGFKDVAESSWYFRS 2458 + KL V GTS FAP A +TRAE +++R G+ + AA FKDV+ +W+ + Sbjct: 2000 ELMASKLIVKGTSNTKFAPNAVVTRAEFAAMVVRALGISEDQAAA-SFKDVSSKNWFAGA 2058 Query: 2459 VSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMVGRLLNVVSSGGESMGDAEAAQILNAFA 2518 V A GIV G ++ P +++TR E M+ R L V +G + G AA LN F Sbjct: 2059 VGAAVKAGIVKGYDGNSFKPNASITREEMAVMISRAL--VFAGKQPAG---AASQLNVFK 2113 Query: 2519 DKGEIPAWAKSPIALSIKYGIIRG-VNGKINPAGVLTRAEAAAMANRLDQFI 2569 DK I AWAK +A +++ II G G P TRAEA M RL +++ Sbjct: 2114 DKASIEAWAKQAVAQAVEAKIIEGKTGGNFAPGSKATRAEATVMLKRLLEYV 2165 >Q0B064.1 Q0B064_SYNWW Putative uncharacterized protein Length = 1260 Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 9/230 (3%) Query: 2340 ITAVVLKNAAGQWTTIPW---KPDSSGTAVDVQLTGEGSLFFINNAKAFKDIAKGFWAGP 2396 IT V+ N+ G ++ +P D A LT L I + K FKD+ K WA Sbjct: 1027 ITTGVILNSDGTFSHVPTVITMIDGKYYAKINSLTNSAYLL-IYSPKTFKDVGK-HWAEK 1084 Query: 2397 DISSASGKLFVLGTSADTFAPQAKITRAELPTILLRVAGLMNNTAAKQGFKDVAESSWYF 2456 D++ + +L + G D F P+ ITRAE +++R GL K F DV WY Sbjct: 1085 DVNDMASRLIISGVGNDLFEPERNITRAEFSAVMVRALGLRPE-EYKNNFFDVKAGEWYS 1143 Query: 2457 RSVSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMVGRLLNVVSSGGESMGDAEAAQILNA 2516 +S ++ G+V G +G + P +TR EAM ++ R ++ G E + +A+ IL A Sbjct: 1144 EYISASSYYGLVRGYDDGIFKPDGNITRQEAMAILARAMDTTKLGEEL--EIDASHILAA 1201 Query: 2517 FADKGEIPAWAKSPIALSIKYGIIRGV-NGKINPAGVLTRAEAAAMANRL 2565 F D ++ WAK + +K G++ G NG+I P +TRAE M RL Sbjct: 1202 FNDNADVSGWAKDSASKCVKTGVVTGRDNGRIAPLDNITRAETTIMVRRL 1251 >B3K5B4.1 B3K5B4_9BACI Endo-1,4-beta-xylanase EC=3.2.1.8 Length = 1483 Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 7/194 (3%) Query: 2373 EGSLFFINNA-KAFKDIAKGFWAGPDISSASGKLFVLGTSADTFAPQAKITRAELPTILL 2431 G F + +A K F D+ WA I + + + F+ G S F PQ +ITRAE +L+ Sbjct: 1285 HGGTFAVASAFKTFHDLKHVPWAIDAIETMASRGFIQGVSETMFDPQNEITRAEFLVMLV 1344 Query: 2432 RVAGLMNNTAAKQGFKDVAESSWYFRSVSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMV 2491 RV L ++ + F DV +++Y++ V IAA+LG+V G+ ++P + +TR + M + Sbjct: 1345 RVLELEGSSEGRAAFGDVTSAAYYYKHVQIAAELGLVQGVGGNRFSPDTPMTRQDMMLIT 1404 Query: 2492 GRLLNVVSSGGESMGDAEAAQILNAFADKGEIPAWAKSPIALSIKYGIIRGVNGKINPAG 2551 R L E G L+AFAD E+ +AKS AL GI+ G+NGKI P Sbjct: 1405 QRALEAAGKKLEGEG------ALDAFADGDEVAEYAKSSAALLAGSGIVNGMNGKIAPKA 1458 Query: 2552 VLTRAEAAAMANRL 2565 TRA+AA + +R+ Sbjct: 1459 YFTRAQAAVILDRI 1472 >C1TBX3.1 C1TBX3_9FIRM Putative molybodpterin-dependent oxidoreductase/S-layer protein Length = 935 Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 5/232 (2%) Query: 2341 TAVVLKNAAGQWTTIPWKPDSS-GTAVDVQLTGEGSLF-FINNAKAFKDIAKGFWAGPDI 2398 T V A ++ +P + ++ G + + L SL+ + ++K+F DI +G WA DI Sbjct: 681 TGAVWNEAKNRFKPVPTRFETRDGKSYAIILNRTNSLYTVLQSSKSFSDI-QGNWAKDDI 739 Query: 2399 SSASGKLFVLGTSADTFAPQAKITRAELPTILLRVAGLMNNTAAKQGFKDVAESSWYFRS 2458 +GK+ + G + T+ P + ITRAE T+L+R L + FKDV S WY S Sbjct: 740 EMLAGKMLISGKNDTTYEPDSNITRAEFATLLVRALALEEGVLHEGQFKDVLVSDWYAGS 799 Query: 2459 VSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMVGRLLNVVSSGGESMGDAEAAQILNAFA 2518 V+ A I+ G G + P +TR + M+ R V +++ +E Q L+ F Sbjct: 800 VAAATGENIIAGYDGGLFKPADNITREKVAVMIARAARVAGK-EDTLSASEQVQQLDQFK 858 Query: 2519 DKGEIPAWAKSPIALSIKYGIIRGV-NGKINPAGVLTRAEAAAMANRLDQFI 2569 DK EI +WA +AL++K GII G+ G P RA++A M R +I Sbjct: 859 DKKEIASWATKDVALAVKIGIIEGMPGGNFAPKANADRAQSAVMLKRFLTYI 910 Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%) Query: 2385 FKDIAKGFWAGPDISSASGKLFVLGTSADTFAPQAKITRAELPTILLR---VAGLMNNTA 2441 FKD+ W +++A+G+ + G F P ITR ++ ++ R VAG + + Sbjct: 787 FKDVLVSDWYAGSVAAATGENIIAGYDGGLFKPADNITREKVAVMIARAARVAGKEDTLS 846 Query: 2442 AKQG------FKDVAE-SSWYFRSVSIAADLGIVTGLSEGTYAPKSTLTRMEAMTMVGRL 2494 A + FKD E +SW + V++A +GI+ G+ G +APK+ R ++ M+ R Sbjct: 847 ASEQVQQLDQFKDKKEIASWATKDVALAVKIGIIEGMPGGNFAPKANADRAQSAVMLKRF 906 Query: 2495 LNVVS 2499 L ++ Sbjct: 907 LTYIN 911 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 14,721,910,005 Number of extensions: 640066825 Number of successful extensions: 1161192 Number of sequences better than 1.0e-05: 742 Number of HSP's gapped: 1160594 Number of HSP's successfully gapped: 802 Length of query: 2572 Length of database: 3,060,696,203 Length adjustment: 153 Effective length of query: 2419 Effective length of database: 1,619,280,908 Effective search space: 3917040516452 Effective search space used: 3917040516452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 140 (58.5 bits)