BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0014.p
         (106 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0GJI9.1 C0GJI9_9FIRM Flagellar protein FliS                          103   6e-21
Q3ADF1.1 Q3ADF1_CARHZ Flagellar protein FliS                           99   9e-20
C0FNT3.1 C0FNT3_9FIRM Putative uncharacterized protein                 99   1e-19
B7GL79.1 B7GL79_ANOFW Flagellin-specific chaperone FliS                97   4e-19
B0K3A3.1 B0K3A3_THEPX Flagellar protein FliS                           97   4e-19

>C0GJI9.1 C0GJI9_9FIRM Flagellar protein FliS
          Length = 123

 Score =  103 bits (256), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 77/97 (79%), Gaps = 1/97 (1%)

Query: 1  LITSPYQKYQQTQLQTASPAQLLLMLYDGAIRFIRMGTSGIDEKNYEKANTNLCKAQAVI 60
          ++ +PYQKY+Q Q++T+SP QL++MLY+GAI+F+++   GI E++ EKA+TN+ K Q +I
Sbjct: 1  MLANPYQKYKQNQVETSSPQQLIIMLYNGAIKFLKLAQMGITEQSIEKAHTNIIKTQDII 60

Query: 61 NELIAALNHDY-PVSKSLYQVYEYMIFQLIQSNLKKD 96
          NEL+A+L+ +   V+  LY +Y+YM  +L+++NLKKD
Sbjct: 61 NELMASLDMNQGEVASHLYSLYDYMNSRLLEANLKKD 97


>Q3ADF1.1 Q3ADF1_CARHZ Flagellar protein FliS
          Length = 125

 Score = 99.4 bits (246), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 69/96 (71%)

Query: 2  ITSPYQKYQQTQLQTASPAQLLLMLYDGAIRFIRMGTSGIDEKNYEKANTNLCKAQAVIN 61
          + +PY +YQ   + TA P +LL+MLYDGAI+F++ G   +DEK Y+  +  + + Q +I+
Sbjct: 1  MNNPYAQYQTQNIATAPPEKLLIMLYDGAIKFLKQGLKALDEKKYDDFSYYISRTQDIIS 60

Query: 62 ELIAALNHDYPVSKSLYQVYEYMIFQLIQSNLKKDK 97
          EL+  L+ DY +SK+LYQ+Y+Y +++LI  N+KKD+
Sbjct: 61 ELMVTLDMDYEISKNLYQLYDYFMYRLIHGNVKKDR 96


>C0FNT3.1 C0FNT3_9FIRM Putative uncharacterized protein
          Length = 125

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 65/97 (67%)

Query: 1  LITSPYQKYQQTQLQTASPAQLLLMLYDGAIRFIRMGTSGIDEKNYEKANTNLCKAQAVI 60
          L    Y  Y   ++ TASPA+L LMLY+GAI+F  +  + I+EKN EKA+ N+ K + +I
Sbjct: 2  LANQGYAAYANNKIMTASPAELTLMLYEGAIKFANLAITAIEEKNIEKAHINIVKVEHII 61

Query: 61 NELIAALNHDYPVSKSLYQVYEYMIFQLIQSNLKKDK 97
           E  A LNH YPV+K   +VY Y++ +L ++N+KKDK
Sbjct: 62 EEFQATLNHKYPVAKDFDEVYSYLMNRLREANMKKDK 98


>B7GL79.1 B7GL79_ANOFW Flagellin-specific chaperone FliS
          Length = 133

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 66/95 (69%)

Query: 2  ITSPYQKYQQTQLQTASPAQLLLMLYDGAIRFIRMGTSGIDEKNYEKANTNLCKAQAVIN 61
          + +PYQ YQ   +QTASP +L LMLY+G ++FI      I+EK+ E  +TNL KAQ +I 
Sbjct: 3  MNNPYQSYQTNAVQTASPGELTLMLYNGCLKFIAQAKKAIEEKDIEARHTNLLKAQKIIQ 62

Query: 62 ELIAALNHDYPVSKSLYQVYEYMIFQLIQSNLKKD 96
          EL+  LN +Y V+KS+  +Y+YM  +L+++N+K D
Sbjct: 63 ELMVTLNMEYEVAKSMMTMYDYMYRRLVEANIKSD 97


>B0K3A3.1 B0K3A3_THEPX Flagellar protein FliS
          Length = 129

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 71/96 (73%)

Query: 1  LITSPYQKYQQTQLQTASPAQLLLMLYDGAIRFIRMGTSGIDEKNYEKANTNLCKAQAVI 60
          ++ +PYQ+Y++  + TASP +L+LMLY+G IRFI      I++K+Y  AN ++ +AQ +I
Sbjct: 1  MMVNPYQQYKENAILTASPEELVLMLYNGIIRFIEEAKGTIEKKDYMAANNSIQRAQDII 60

Query: 61 NELIAALNHDYPVSKSLYQVYEYMIFQLIQSNLKKD 96
           EL+  L+ +Y +SK+LY +Y+YM+ +LI +N+KKD
Sbjct: 61 TELMLTLDMNYDISKNLYSLYDYMLRRLIDANVKKD 96


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 499,652,677
Number of extensions: 16640002
Number of successful extensions: 38669
Number of sequences better than 1.0e-05: 157
Number of HSP's gapped: 38876
Number of HSP's successfully gapped: 157
Length of query: 106
Length of database: 3,060,696,203
Length adjustment: 74
Effective length of query: 32
Effective length of database: 2,363,541,093
Effective search space: 75633314976
Effective search space used: 75633314976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)