BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0012.p
         (129 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DEA0.1 B1DEA0_9BACL Flagellar protein FlaG protein                   84   4e-15
B9MK90.1 B9MK90_ANATD Flagellar protein FlaG protein                   84   5e-15
A4XK50.1 A4XK50_CALS8 Flagellar protein FlaG protein                   83   8e-15
B8I4D8.1 B8I4D8_CLOCE Flagellar protein FlaG protein                   82   2e-14
A3DHJ2.1 A3DHJ2_CLOTH Flagellar protein FlaG protein                   77   3e-13

>B1DEA0.1 B1DEA0_9BACL Flagellar protein FlaG protein
          Length = 140

 Score = 84.0 bits (206), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 34  GSENDTSLKSSELA-IETASLPVERDQLIQQLEKAIRAVQGPEKTFKISIHEQTHSIMVK 92
           GS + TS +  ++A ++   + V   QL + +E+A++A++G     +  +H+QTH + VK
Sbjct: 44  GSRSYTSFEDVKIAELQGEKISVGEQQLFKNIEQAVKAMRGRPTELQFDVHKQTHLVAVK 103

Query: 93  VFDKQTGDLIREIPPEKLLDVAANMMELSGLIVDEK 128
           V DK+TG+++REIPPEK LD  A + E++GLIVDEK
Sbjct: 104 VKDKETGEVLREIPPEKSLDFIAKLWEMAGLIVDEK 139


>B9MK90.1 B9MK90_ANATD Flagellar protein FlaG protein
          Length = 132

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 73/117 (62%), Gaps = 7/117 (5%)

Query: 12  SNKIVPSNTPAAVQGVVFPTKGGSENDTSLKSSELAIETASLPVERDQLIQQLEKAIRAV 71
            N+  P N   ++Q      KG ++ + + K   LA + +   ++ D LI+ + +A +A 
Sbjct: 22  DNRTRPENIDVSLQ----EEKGINKEEVNDK---LADKNSRKELDEDTLIKMINQANKAF 74

Query: 72  QGPEKTFKISIHEQTHSIMVKVFDKQTGDLIREIPPEKLLDVAANMMELSGLIVDEK 128
           +      + SIH++TH I+VKV+DK+T +LIREIPPEK+LD+ A + EL+G+ VDE+
Sbjct: 75  EAKYTRLEFSIHKETHEIVVKVYDKETNELIREIPPEKILDIIAKLWELAGIFVDER 131


>A4XK50.1 A4XK50_CALS8 Flagellar protein FlaG protein
          Length = 132

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 61/86 (70%)

Query: 43  SSELAIETASLPVERDQLIQQLEKAIRAVQGPEKTFKISIHEQTHSIMVKVFDKQTGDLI 102
           + +LA + +   ++ D LI+ + +A +A +      + SIH++TH I+VKV+DK+T +LI
Sbjct: 46  NDKLADKNSRKELDEDTLIKMINQANKAFEAKYTRLEFSIHKETHEIVVKVYDKETNELI 105

Query: 103 REIPPEKLLDVAANMMELSGLIVDEK 128
           REIPPEK+LD+ A + EL+G+ VDE+
Sbjct: 106 REIPPEKILDIIAKLWELAGIFVDER 131


>B8I4D8.1 B8I4D8_CLOCE Flagellar protein FlaG protein
          Length = 128

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 58/77 (75%)

Query: 52  SLPVERDQLIQQLEKAIRAVQGPEKTFKISIHEQTHSIMVKVFDKQTGDLIREIPPEKLL 111
           ++PV    +I+ ++KA +A+ G  + F+ SIHE+T+ I+VKVFD  T +LIREIP EK+L
Sbjct: 51  NMPVSERVVIEAIQKANKAISGGNRRFEFSIHEKTNEIVVKVFDSDTNELIREIPNEKVL 110

Query: 112 DVAANMMELSGLIVDEK 128
           D+ A + E++G++VDE+
Sbjct: 111 DMVAKICEMAGILVDER 127


>A3DHJ2.1 A3DHJ2_CLOTH Flagellar protein FlaG protein
          Length = 131

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 53/70 (75%)

Query: 60  LIQQLEKAIRAVQGPEKTFKISIHEQTHSIMVKVFDKQTGDLIREIPPEKLLDVAANMME 119
           +I+ +EKA +A+ G     + SIHE++  IMVKV D +T ++IREIPPEK+LD+ A M+E
Sbjct: 62  IIKAIEKANKAINGIHTELEFSIHEKSKEIMVKVIDSETKEVIREIPPEKILDMVAAMLE 121

Query: 120 LSGLIVDEKA 129
           ++G+IV+E+ 
Sbjct: 122 MAGIIVNERG 131


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 704,030,732
Number of extensions: 23680186
Number of successful extensions: 59655
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 59669
Number of HSP's successfully gapped: 54
Length of query: 129
Length of database: 3,060,696,203
Length adjustment: 94
Effective length of query: 35
Effective length of database: 2,175,120,793
Effective search space: 76129227755
Effective search space used: 76129227755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)