BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0010.p
         (77 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0FQ37.1 C0FQ37_9FIRM Putative uncharacterized protein                 80   7e-14
C4Z9R8.1 C4Z9R8_9FIRM Probable carbon storage regulator                79   2e-13
Q5WDF0.1 CSRA_BACSK Carbon storage regulator homolog                   78   3e-13
C1P9A3.1 C1P9A3_BACCO Carbon storage regulator, CsrA                   75   2e-12
C0Z6W4.1 CSRA_BREBN Carbon storage regulator homolog                   75   2e-12

>C0FQ37.1 C0FQ37_9FIRM Putative uncharacterized protein
          Length = 72

 Score = 79.7 bits (195), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 49/59 (83%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAIQQNNQSAV 59
          ML L+RKKGE++VI N+I +TVL + GD +KIGISAPKD+ IYRKE++  IQQ N++A+
Sbjct: 1  MLALTRKKGEALVINNNIEITVLEIRGDQIKIGISAPKDVPIYRKEVYLQIQQENEAAI 59


>C4Z9R8.1 C4Z9R8_9FIRM Probable carbon storage regulator
          Length = 72

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 47/58 (81%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAIQQNNQSA 58
          ML L+RKKGES+VI NDI +T+L + GD +K+G+SAPK++ IYRKE++  IQQ N+ +
Sbjct: 1  MLALTRKKGESLVINNDIEITILEIRGDQIKLGVSAPKEVPIYRKEVYTQIQQENRKS 58


>Q5WDF0.1 CSRA_BACSK Carbon storage regulator homolog
          Length = 79

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 50/64 (78%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAIQQNNQSAVL 60
          MLVLSRK GE+I I +DI + VLAVEGD VK+GISAPK +D++R E+++AIQ+ N+ A  
Sbjct: 1  MLVLSRKAGEAIRIMDDIEIKVLAVEGDQVKLGISAPKSVDVHRGEVYEAIQEENKHAAK 60

Query: 61 DLEA 64
           + A
Sbjct: 61 PVSA 64


>C1P9A3.1 C1P9A3_BACCO Carbon storage regulator, CsrA
          Length = 79

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 51/65 (78%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAIQQNNQSAVL 60
          ML+LSRKKGESI I +DI +T+ A+ GD VKIGI+APK ++I+RKE++  IQ+ N +A  
Sbjct: 1  MLILSRKKGESIQIGDDIEITIAAIHGDQVKIGINAPKHVEIHRKEVYLDIQEENANAAK 60

Query: 61 DLEAI 65
          ++E +
Sbjct: 61 NIEGL 65


>C0Z6W4.1 CSRA_BREBN Carbon storage regulator homolog
          Length = 82

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 50/59 (84%)

Query: 1  MLVLSRKKGESIVIQNDIVVTVLAVEGDVVKIGISAPKDIDIYRKEIFDAIQQNNQSAV 59
          MLVLSRKK ESI+I + I + +++++GD +K+GI AP+++D+YRKEIFDAIQ+ N+ A+
Sbjct: 1  MLVLSRKKNESIMIGDTIEIKIISIDGDQIKLGIDAPRNLDVYRKEIFDAIQEENRLAM 59


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 392,773,394
Number of extensions: 12368760
Number of successful extensions: 37151
Number of sequences better than 1.0e-05: 538
Number of HSP's gapped: 37163
Number of HSP's successfully gapped: 538
Length of query: 77
Length of database: 3,060,696,203
Length adjustment: 48
Effective length of query: 29
Effective length of database: 2,608,487,483
Effective search space: 75646137007
Effective search space used: 75646137007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)