BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0009.p
         (152 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A0PZZ5.1 FLIW_CLONN Flagellar assembly factor fliW                    100   7e-20
C1TAV0.1 C1TAV0_9FIRM Uncharacterized conserved protein                98   2e-19
A8MJP5.1 A8MJP5_ALKOO Putative uncharacterized protein                 98   2e-19
B1IK66.1 FLIW_CLOBK Flagellar assembly factor fliW                     97   4e-19
Q893T7.2 FLIW_CLOTE Flagellar assembly factor fliW                     97   5e-19

>A0PZZ5.1 FLIW_CLONN Flagellar assembly factor fliW
          Length = 143

 Score = 99.8 bits (247), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 2/122 (1%)

Query: 24  FSKGLPGFEQLKEFSL--KEHNDIFSLLSAADQPEVTFITVNPFDFVPDYEFILPEDTIH 81
           F KG+PGF +LK F     E N++FS+L + +  E+ FI  +PF  + DYE  L +  I 
Sbjct: 21  FKKGIPGFNELKRFINFPIEDNEVFSVLHSIENNEIGFIVTSPFSIIKDYEINLDDSVIE 80

Query: 82  ELGVKDEKQVSVRCIVTWHSDRSKVSVNLLAPLIFNTVDRKGKQIVLQNTTYTTKHPLWT 141
            L +++EK V V   VT HS    ++VNL AP++ N   + G+QI+L N  Y  KHPL+ 
Sbjct: 81  RLNIENEKDVLVLNTVTLHSKLENITVNLCAPIVINIKTKLGEQIILNNGKYQIKHPLFK 140

Query: 142 DS 143
           + 
Sbjct: 141 EG 142


>C1TAV0.1 C1TAV0_9FIRM Uncharacterized conserved protein
          Length = 159

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 80/127 (62%), Gaps = 3/127 (2%)

Query: 24  FSKGLPGFEQLKEFSL--KEHNDIFSLLSAADQPEVTFITVNPFDFVPDYEFILPEDTIH 81
           F  G+PGFE+LK F L  +E  D F  L + D+P V F+  NPF F P Y F LP++ I 
Sbjct: 21  FPTGIPGFEELKRFMLLPEEDMDAFYWLQSVDEPAVAFLATNPFIFFPGYSFDLPDEEIK 80

Query: 82  ELGVKDEKQVSVRCIVTWHSDR-SKVSVNLLAPLIFNTVDRKGKQIVLQNTTYTTKHPLW 140
            L +++ +++ V  I++   +R ++ + NL+ P++ NT  ++ KQ++L  T+Y+TKH L+
Sbjct: 81  NLDIQNPEEILVVNIISIPRNRVTETTANLVGPIVINTRLKQAKQVILTGTSYSTKHLLF 140

Query: 141 TDSPKTD 147
           T + K +
Sbjct: 141 TGAAKKE 147


>A8MJP5.1 A8MJP5_ALKOO Putative uncharacterized protein
          Length = 159

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 21  AYFFSKGLPGFEQLKEFSLKEHNDI---FSLLSAADQPEVTFITVNPFDFVPDYEFILPE 77
            Y F  G+PGFE L ++ + E+ +    F  L + ++  + F  +NPF F  DYEF +  
Sbjct: 16  VYTFVDGIPGFEDLHQYMIIENTEEDMPFHWLQSLEESNLAFTIINPFTFKKDYEFDIDG 75

Query: 78  DTIHELGVKDEKQVSVRCIVTWHSDRSKVSVNLLAPLIFNTVDRKGKQIVLQNTTYTTKH 137
            T+ +L +K  + V V  IVT   D SK+S NL APLI N V+RKGKQ++LQ++ YT+KH
Sbjct: 76  VTLDKLNIKSHEDVVVYAIVTIPEDVSKMSANLAAPLIMNHVNRKGKQVLLQDSKYTSKH 135


>B1IK66.1 FLIW_CLOBK Flagellar assembly factor fliW
          Length = 143

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 79/123 (64%), Gaps = 2/123 (1%)

Query: 23  FFSKGLPGFEQLKEFSL--KEHNDIFSLLSAADQPEVTFITVNPFDFVPDYEFILPEDTI 80
           +F KG+PGFE+LK+F +   E ND+FS+  + ++ ++  I ++PF+   DYE  L E+  
Sbjct: 20  YFEKGIPGFEELKKFIIFPVEDNDVFSVFHSIEKEDMGIIVISPFNIEKDYEIQLEEEQR 79

Query: 81  HELGVKDEKQVSVRCIVTWHSDRSKVSVNLLAPLIFNTVDRKGKQIVLQNTTYTTKHPLW 140
            +L +++EK   V   VT +SD  K++VNL AP+I N  ++ G+QI++ +  Y  KHPL+
Sbjct: 80  KKLELQNEKDALVLNTVTLNSDIDKITVNLRAPIIINIKEKIGEQIIINSDKYKVKHPLF 139

Query: 141 TDS 143
            + 
Sbjct: 140 KEE 142


>Q893T7.2 FLIW_CLOTE Flagellar assembly factor fliW
          Length = 145

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 77/125 (61%), Gaps = 2/125 (1%)

Query: 24  FSKGLPGFEQLKEFSLK--EHNDIFSLLSAADQPEVTFITVNPFDFVPDYEFILPEDTIH 81
           F +GLPGFE LK+F +   E N+IFS+L + ++  +    ++PF    DYE  L E+ I 
Sbjct: 21  FKRGLPGFEHLKKFIVYSIEENNIFSVLQSLEEENIGIPVLSPFTICSDYEVKLTEEQIK 80

Query: 82  ELGVKDEKQVSVRCIVTWHSDRSKVSVNLLAPLIFNTVDRKGKQIVLQNTTYTTKHPLWT 141
            L +K E++V V   VT +SD  +++ NL AP+I N  +R G+QI+L+N  Y  K+P++ 
Sbjct: 81  NLKIKSEEEVWVLNTVTINSDYKEITTNLRAPIIINIKERIGEQIILKNEEYKIKYPIFQ 140

Query: 142 DSPKT 146
           +  K 
Sbjct: 141 EENKC 145


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 945,157,137
Number of extensions: 36216343
Number of successful extensions: 67602
Number of sequences better than 1.0e-05: 182
Number of HSP's gapped: 67468
Number of HSP's successfully gapped: 182
Length of query: 152
Length of database: 3,060,696,203
Length adjustment: 114
Effective length of query: 38
Effective length of database: 1,986,700,493
Effective search space: 75494618734
Effective search space used: 75494618734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)