BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0526.0008.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DEB1.1 B1DEB1_9BACL Flagellar hook-associated protein 3 255 4e-66 B3K7G2.1 B3K7G2_9BACI Flagellar hook-associated protein 3 252 3e-65 C0Z6W7.1 C0Z6W7_BREBN Flagellar hook-associated protein 3 198 5e-49 Q65EB4.1 Q65EB4_BACLD FlgL 191 7e-47 B0KC66.1 B0KC66_THEP3 Flagellar hook-associated protein 3 188 4e-46 >B1DEB1.1 B1DEB1_9BACL Flagellar hook-associated protein 3 Length = 319 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 132/320 (41%), Positives = 203/320 (63%), Gaps = 19/320 (5%) Query: 1 MSIRVTQGMMSMQTXXXXXXXXXXXXDLADQASTGRKINKPSDNPVGVTYSLRYRAELAS 60 M++RVTQ MMS Q L +Q +TG+ INKPSD+P+G+T++LRYR E+AS Sbjct: 1 MALRVTQRMMSSQMLGNITNNLNSMNKLQNQLATGKAINKPSDDPIGITFALRYRGEIAS 60 Query: 61 NEQFQTNADAAVSWLDFTDSTMQQATDVMKRLKELTVQASSSTVPKSGLDAIKLEVEQLK 120 N+Q+ N+DAA+S L++ D+T+ QATD+++R +EL V+ S+ T+ ++ + AI+ EV QL Sbjct: 61 NDQYTDNSDAALSSLEYMDTTIGQATDIVQRFRELIVKGSNGTLEQTSMTAIQTEVSQLY 120 Query: 121 DQLGNIGNAQIRGKYIFNGQNFDKPPYELSG------------TVTNFAQIDTDSGAVKY 168 +Q+ IGN+Q GK +FNG+ PY G + F+ TD+G+++Y Sbjct: 121 NQMVEIGNSQFNGKQMFNGEQTGVKPYSTLGLDQQSDPSADPPILKAFSN-QTDTGSIQY 179 Query: 169 AIGDQSTFQVNTTGSEFFGAS------TDSDNIYKVMDDLISALGSENYTGIAAQAGKIE 222 + T VN TG++ FGA T SDN++++M LGS + G+ G+I+ Sbjct: 180 ELSPGMTMDVNMTGNDVFGAPVADESDTTSDNLFQLMHRAYDMLGSGDQEGLTGLLGQID 239 Query: 223 SRSTKMQAALSEVGARTNRVELVQGRLNERDLNLTTLQAKIEDADIAEVMIKSTTAQTIY 282 +R M A ++VGAR NRVE+VQGRL++ D+NL +Q K+ED D+AE + TT + +Y Sbjct: 240 TRMNTMLTARAQVGARVNRVEIVQGRLSDVDINLQQMQQKVEDVDMAEAITNITTLENVY 299 Query: 283 EAALKSSASILQPSLMDFMR 302 +A+L + A I+QPSL+DF+R Sbjct: 300 QASLSAGAKIIQPSLVDFLR 319 >B3K7G2.1 B3K7G2_9BACI Flagellar hook-associated protein 3 Length = 298 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 197/302 (65%), Gaps = 4/302 (1%) Query: 1 MSIRVTQGMMSMQTXXXXXXXXXXXXDLADQASTGRKINKPSDNPVGVTYSLRYRAELAS 60 M++RVT GMM++Q + STG K+NKPSD+PVG+TYSLRYR+EL+ Sbjct: 1 MALRVTPGMMNLQMIRNINTNLVRMDGNMNVLSTGMKLNKPSDDPVGITYSLRYRSELSF 60 Query: 61 NEQFQTNADAAVSWLDFTDSTMQQATDVMKRLKELTVQASSSTVPKSGLDAIKLEVEQLK 120 N+Q+Q NAD A+SWL++TD+ + Q ++ +R EL V A + T P+ GLDAI +E++Q+ Sbjct: 61 NDQYQKNADTALSWLEYTDTVIGQVNEISQRANELIVNAVNGTNPQEGLDAINIELKQIY 120 Query: 121 DQLGNIGNAQIRGKYIFNGQNFDKPPYELSGTVTNFAQIDTDSGAVKYAIGDQSTFQVNT 180 +QL ++GN++ KYIFNGQ D+ PY+ T TD + Y + +T +N Sbjct: 121 EQLISLGNSKFNDKYIFNGQLTDQAPYDKVLAPTQ----GTDLHGITYKFTEGATLNINV 176 Query: 181 TGSEFFGASTDSDNIYKVMDDLISALGSENYTGIAAQAGKIESRSTKMQAALSEVGARTN 240 TG + FG +D DN++ +++ + +AL ++ + + SR +K+ A SE+GA+TN Sbjct: 177 TGQDVFGEPSDPDNLFSILNRVQAALTIDDKAAARTELDNLSSRLSKINEARSEIGAKTN 236 Query: 241 RVELVQGRLNERDLNLTTLQAKIEDADIAEVMIKSTTAQTIYEAALKSSASILQPSLMDF 300 RV+L+ RL + ++NLT +QAK+EDAD AE ++K +++Y+A+L +SA I+Q SL+D+ Sbjct: 237 RVDLIFNRLGDLEINLTAMQAKVEDADYAETIMKLKQDESVYQASLATSAKIMQISLLDY 296 Query: 301 MR 302 +R Sbjct: 297 LR 298 >C0Z6W7.1 C0Z6W7_BREBN Flagellar hook-associated protein 3 Length = 300 Score = 198 bits (503), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 168/302 (55%), Gaps = 2/302 (0%) Query: 1 MSIRVTQGMMSMQTXXXXXXXXXXXXDLADQASTGRKINKPSDNPVGVTYSLRYRAELAS 60 M++RVTQ M++ L Q ++G KI KPSD+PV + YR+ L Sbjct: 1 MAVRVTQNMLNSNMLRNLHNSMRNMDKLQHQLASGSKIEKPSDDPVVAARGMFYRSSLME 60 Query: 61 NEQFQTNADAAVSWLDFTDSTMQQATDVMKRLKELTVQASSSTVPKSGLDAIKLEVEQLK 120 N+Q++ N D A SW+D TD TM + +VMKR+KEL + ++ + L + E+++LK Sbjct: 61 NDQYKRNVDEAKSWMDMTDGTMDEVGNVMKRVKELLIYSADGAISPDDLKTMGSEIQELK 120 Query: 121 DQLGNIGNAQIRGKYIFNGQNFDKPPYELSGTVTNFAQIDTDSGAVKYAIGDQSTFQVNT 180 + LG + N QI GKYIF G + +K PY+L+ + T+S + + N Sbjct: 121 NHLGTLANQQINGKYIFAGTDTNKAPYDLTANGGKGDFVSTNSSPINLEVSQNVFVTSNI 180 Query: 181 TGSEFFGASTDSDNIYKVMDDLISALGSENYTGIAAQAGKIESRSTKMQAALSEVGARTN 240 F +++N++K +D++I+ L N A I + K+ A + +GA N Sbjct: 181 NAQNIFNFPDNANNMFKALDNIITEL--NNGRSAAQFQPAINQQYDKLLAERASLGASVN 238 Query: 241 RVELVQGRLNERDLNLTTLQAKIEDADIAEVMIKSTTAQTIYEAALKSSASILQPSLMDF 300 RVEL+ RLN +++ +T L +K EDAD+A+VM T ++++ AAL S A I+QPSL+DF Sbjct: 239 RVELIAERLNTQEVGITGLLSKNEDADMAKVMTNLKTQESVHSAALGSGARIIQPSLLDF 298 Query: 301 MR 302 +R Sbjct: 299 LR 300 >Q65EB4.1 Q65EB4_BACLD FlgL Length = 303 Score = 191 bits (485), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 179/304 (58%), Gaps = 5/304 (1%) Query: 3 IRVTQGMMSMQTXXXXXXXXXXXXDLADQASTGRKINKPSDNPVGVTYSLRYRAELASNE 62 +RVTQGM++ + L Q S+G+KI K SD+PV SL+Y +L+ + Sbjct: 1 MRVTQGMIAKNSLRYINSSYGKLDKLQSQISSGKKITKASDDPVVAMKSLKYNTQLSQVK 60 Query: 63 QFQTNADAAVSWLDFTDSTMQQATDVMKRLKELTVQASSSTVPKSGLDAIKLEVEQLKDQ 122 Q+Q+NA A +WL+ T++ + + D+M +++ELTV+A +ST K L+AI +E+ QLKDQ Sbjct: 61 QYQSNASQAFTWLENTETNITEGIDIMAKIRELTVKAQNSTNGKDELNAIGVEIGQLKDQ 120 Query: 123 LGNIGNAQIRGKYIFNGQNFDKPPY--ELSGTVT-NFAQIDTDSGAVKYAIGDQSTFQVN 179 L I N Q+ G+Y+FNG N D P GT T NF T S V + +T VN Sbjct: 121 LIQIANTQVNGRYLFNGTNSDVAPITKNADGTYTYNFENY-TSSSDVLINVSPNATLNVN 179 Query: 180 TTG-SEFFGASTDSDNIYKVMDDLISALGSENYTGIAAQAGKIESRSTKMQAALSEVGAR 238 + S F G S+ N++++++ L +AL + G+ I+ S +M S++GAR Sbjct: 180 SNPISAFGGQSSSGQNVFEMIESLENALKAGTMEGMENALSDIDQFSNQMSNERSDIGAR 239 Query: 239 TNRVELVQGRLNERDLNLTTLQAKIEDADIAEVMIKSTTAQTIYEAALKSSASILQPSLM 298 NR+EL+ RL+E++ T + + ED ++ E++ + T Q+++ AAL +A I+QP+L+ Sbjct: 240 YNRLELINARLSEQEETATKVLSDNEDVELEEIITEFITQQSVHRAALAVNAKIVQPTLV 299 Query: 299 DFMR 302 DF+R Sbjct: 300 DFLR 303 >B0KC66.1 B0KC66_THEP3 Flagellar hook-associated protein 3 Length = 297 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 171/302 (56%), Gaps = 7/302 (2%) Query: 3 IRVTQGMMSMQTXXXXXXXXXXXXDLADQASTGRKINKPSDNPVGVTYSLRYRAELASNE 62 +RVT GM+ + STG+KI++PSD+PV V SLR R ++A N+ Sbjct: 1 MRVTDGMLVTNFLNNYHNNLEKLQKNQNMLSTGKKISRPSDDPVAVATSLRIRTDMARND 60 Query: 63 QFQTNADAAVSWLDFTDSTMQQATDVMKRLKELTVQASSSTVPKSGLDAIKLEVEQLKDQ 122 + NAD A SWLD TDS + Q D+++R +EL VQ ++ T+ ++ + + E+EQLK Q Sbjct: 61 AYTKNADYAKSWLDITDSALNQLGDLLQRTRELAVQGANGTLTQADMQKMANEIEQLKAQ 120 Query: 123 LGNIGNAQIRGKYIFNGQNFDKPPYELSGTVTNFAQIDTDSGAVKYAIG-DQSTFQVNTT 181 + +GN Q G+YIF G P+ N D+G +++ +G + VN Sbjct: 121 MIQVGNTQYNGRYIFAGFKTTTQPFSEDNNSYN-----GDNGLIEFEVGAGGNKIAVNVP 175 Query: 182 GSEFFGAS-TDSDNIYKVMDDLISALGSENYTGIAAQAGKIESRSTKMQAALSEVGARTN 240 G + F T + + +MD+L SAL S ++ ++ ++ + + A +EVGA++N Sbjct: 176 GDKVFDVDLTGTSQLLVMMDNLKSALDSGDHQAVSNLIVDVDKQMENVLAVRAEVGAKSN 235 Query: 241 RVELVQGRLNERDLNLTTLQAKIEDADIAEVMIKSTTAQTIYEAALKSSASILQPSLMDF 300 R++L+Q RL + + N T L +K EDAD+A+V+ + +Y A+L + A I+QPSL+DF Sbjct: 236 RIDLIQNRLQDDNYNFTALLSKSEDADLAQVITNLKMDENVYRASLAAGARIMQPSLIDF 295 Query: 301 MR 302 +R Sbjct: 296 LR 297 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.125 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,415,950,285 Number of extensions: 53604688 Number of successful extensions: 145230 Number of sequences better than 1.0e-05: 2465 Number of HSP's gapped: 144333 Number of HSP's successfully gapped: 2495 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)