BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0526.0006.p (166 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7G4.1 B3K7G4_9BACI Putative uncharacterized protein 103 6e-21 B9MKB2.1 B9MKB2_ANATD FlgN family protein 69 1e-10 B1DEB3.1 B1DEB3_9BACL Putative uncharacterized protein 69 2e-10 A8FHX8.1 A8FHX8_BACP2 Putative uncharacterized protein yvyG 67 4e-10 B4AGU7.1 B4AGU7_BACPU YvyG 67 5e-10 >B3K7G4.1 B3K7G4_9BACI Putative uncharacterized protein Length = 166 Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 90/152 (59%), Gaps = 2/152 (1%) Query: 16 AHLQMLDLAAVKKDAIKTNQVDYLIQLLNKESKHMKLIEQLEEERMQAAYAFLQGVGIRS 75 HL+M+D+ K+ AI N L +L+ E++ ++ + +LE++R++ FLQ GIRS Sbjct: 16 VHLEMIDVGKEKQQAIIDNDSSNLTRLMTIENRLLRQMNELEQQRVEQVNFFLQEKGIRS 75 Query: 76 NLNLNLTELSRLVFDPEEKQQLFHMQRKLSGTLQRLKEANTLNQQLLEQALSYIDFSIES 135 L+L++TELSRLVFDP EKQ+L ++ L LK N L QLLEQ+L +IDFS+ Sbjct: 76 QLSLSVTELSRLVFDPNEKQELMQIRDSLLSNAMILKRQNELTTQLLEQSLHFIDFSLNI 135 Query: 136 MSYYSETEATYHHPAGKTAGV-QRSGLFDSRA 166 + E E Y P + ++ FD++A Sbjct: 136 IVGVDE-EMIYKKPTDTPPALSNKNNFFDAKA 166 >B9MKB2.1 B9MKB2_ANATD FlgN family protein Length = 161 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 19 QMLDLAAVKKDAIKTNQVDYLIQLLNKESKHMKLIEQLEEERMQAAYAFLQGVGIRSNLN 78 ++L+L+ K I N + LI++ N+E K ++IE+LE ER + A + I Sbjct: 20 RILNLSNEKTKYIVENNLSALIEVSNQEKKETEIIEKLERERQEILNALSKEKNIAI--- 76 Query: 79 LNLTELSRLVFDPEEKQQLFHMQRKLSGTLQRLKEANTLNQQLLEQALSYIDFSIESMSY 138 +NL EL + P+E Q++ ++ KL + +LK+ N LN L+ AL YIDF +S Sbjct: 77 VNLNELVNIA-TPDEWQRINDLKVKLGEIIFKLKKTNDLNASLVSSALEYIDFMTNVISS 135 Query: 139 YSETEATYHHPAGKTAGVQRSGLFDSR 165 Y TY G+T G Q+ LFD + Sbjct: 136 YFSDNTTYQKD-GQT-GSQKKNLFDVK 160 >B1DEB3.1 B1DEB3_9BACL Putative uncharacterized protein Length = 167 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 83/148 (56%), Gaps = 1/148 (0%) Query: 16 AHLQMLDLAAVKKDAIKTNQVDYLIQLLNKESKHMKLIEQLEEERMQAAYAFLQGVGIRS 75 AH +++ A K +AI+ V+ + + ++E K ++ I LE+ R+ F G+R+ Sbjct: 18 AHKELIRHANEKTEAIRLENVEAVSLVTSREKKSVQRIVDLEQTRLLLVGRFTVEQGLRN 77 Query: 76 NLNLNLTELSRLVFDPEEKQQLFHMQRKLSGTLQRLKEANTLNQQLLEQALSYIDFSIES 135 +L + +L ++V+ E+K +L M R+LS ++ L++ NT NQQL+ L Y+ F+ + Sbjct: 78 MRSLKMEKLIQMVYHAEQKLELQQMWRELSAAIKELQDVNTFNQQLIRMNLDYLQFTQDL 137 Query: 136 MSYYSETEATYHHPAGKTAGVQRSGLFD 163 + E E TYH A + VQR+ ++ Sbjct: 138 LLGAPEDEVTYHR-AVQGMNVQRASRYN 164 >A8FHX8.1 A8FHX8_BACP2 Putative uncharacterized protein yvyG Length = 160 Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 84/152 (55%), Gaps = 10/152 (6%) Query: 17 HLQMLDLAAVKKDAIKTNQVDYLIQLLNKESKHMKLIEQLEEERMQAAYAFLQGVGIRSN 76 H Q+L L+ K + +K+N++D L ++LN E K+++ I QLEE+R++A FLQ Sbjct: 17 HEQLLKLSKDKTEMLKSNEIDALSEVLNLEQKYIQAISQLEEKRIEATVQFLQ------- 69 Query: 77 LNLNLTELSRLVFDPE--EKQQLFHMQRKLSGTLQRLKEANTLNQQLLEQALSYIDFSIE 134 N ++ + E ++++L + KL+ + LK+ N LN+QL++Q+L +I + + Sbjct: 70 -NDETPTITACIEKAEGSDQEELISLYDKLNDIMVELKDVNELNKQLIQQSLQFISLTFD 128 Query: 135 SMSYYSETEATYHHPAGKTAGVQRSGLFDSRA 166 ++ E + + Q+ LFDS+A Sbjct: 129 LVNPNKENMNYGQNGLESSKPKQQRALFDSKA 160 >B4AGU7.1 B4AGU7_BACPU YvyG Length = 160 Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 84/152 (55%), Gaps = 10/152 (6%) Query: 17 HLQMLDLAAVKKDAIKTNQVDYLIQLLNKESKHMKLIEQLEEERMQAAYAFLQGVGIRSN 76 H Q+L L+ K + +K+N++D L ++LN E K+++ I QLEE+R++A FLQ Sbjct: 17 HEQLLKLSKDKTEMLKSNEIDALSEVLNLEQKYIQAISQLEEKRIEATVQFLQ------- 69 Query: 77 LNLNLTELSRLVFDPE--EKQQLFHMQRKLSGTLQRLKEANTLNQQLLEQALSYIDFSIE 134 N ++ + E ++++L + KL+ + LK+ N LN+QL++Q+L +I + + Sbjct: 70 -NDEPPTITACIEKAEGSDQEELISLYDKLNDIMVELKDVNELNKQLIQQSLQFISLTFD 128 Query: 135 SMSYYSETEATYHHPAGKTAGVQRSGLFDSRA 166 ++ E + + Q+ LFDS+A Sbjct: 129 LVNPNKENMNYGQNGLESSKPKQQRALFDSKA 160 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.129 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 737,010,846 Number of extensions: 24920152 Number of successful extensions: 96759 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 96747 Number of HSP's successfully gapped: 31 Length of query: 166 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 41 Effective length of database: 1,883,069,328 Effective search space: 77205842448 Effective search space used: 77205842448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)