BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0005.p
         (115 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7G5.1 B3K7G5_9BACI Anti-sigma-28 factor FlgM family protein         88   3e-16
B1DEB4.1 B1DEB4_9BACL Anti-sigma-28 factor, FlgM                       80   7e-14
C1P9A8.1 C1P9A8_BACCO Anti-sigma-28 factor, FlgM                       66   1e-09
B7GL02.1 B7GL02_ANOFW Negative regulator of flagellin synthesis ...    59   2e-07
C5D7U0.1 C5D7U0_9BACI Anti-sigma-28 factor, FlgM                       57   7e-07

>B3K7G5.1 B3K7G5_9BACI Anti-sigma-28 factor FlgM family protein
          Length = 98

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 3/91 (3%)

Query: 21  MKINETGRINAINPYQRNAETQRQEQL-KKSTRKDEVSISDEAIKLLQAQKSGEVDAERA 79
           MKINE+GR+N IN YQRN E++  + + KK  RKDEVSIS EA++L  + +S   D ERA
Sbjct: 1   MKINESGRVNGINSYQRNIESREMQHIDKKKRRKDEVSISPEAMEL--SAQSKVQDPERA 58

Query: 80  SRIESLKQQVSAGTYQVDAAKLAASLAPYFK 110
            +I+ LK+ V+ GTY+V   +LA  L PYF+
Sbjct: 59  EKIQRLKEAVTNGTYEVPVDRLADKLLPYFQ 89


>B1DEB4.1 B1DEB4_9BACL Anti-sigma-28 factor, FlgM
          Length = 88

 Score = 80.1 bits (196), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 3/90 (3%)

Query: 21  MKINETGRINAINPYQRNAETQRQEQLKKSTRKDEVSISDEAIKLLQAQKSGEVDAERAS 80
           MKINET RI A NPYQ+  E QR +   K  +KD V IS EA ++L   ++     ER  
Sbjct: 1   MKINETNRIGAYNPYQKQME-QRIDGANKKKQKDIVEISAEAKEMLSTSQTN--SPERQQ 57

Query: 81  RIESLKQQVSAGTYQVDAAKLAASLAPYFK 110
           R+E LKQ +SAGTY+VDA K+A  L PY K
Sbjct: 58  RLEELKQSISAGTYKVDAGKIADKLLPYLK 87


>C1P9A8.1 C1P9A8_BACCO Anti-sigma-28 factor, FlgM
          Length = 88

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 55/90 (61%), Gaps = 6/90 (6%)

Query: 21  MKINETGRINAINPYQRNAETQRQEQLKKSTRK-DEVSISDEAIKLLQAQKSGEVDAERA 79
           MKIN     + INPYQ+ A    Q Q   STRK D+V IS EA +L   QK+ + + ER+
Sbjct: 1   MKINPVN-TSGINPYQQQARRDVQ-QTASSTRKTDKVEISSEAKQL---QKTSQFEQERS 55

Query: 80  SRIESLKQQVSAGTYQVDAAKLAASLAPYF 109
            +IE+LKQQV  GTYQ DA K A  +  YF
Sbjct: 56  RKIEALKQQVQHGTYQPDAEKTAEGILKYF 85


>B7GL02.1 B7GL02_ANOFW Negative regulator of flagellin synthesis
           (Anti-sigma28 factor)
          Length = 85

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 8/92 (8%)

Query: 21  MKINETGRINAINPYQRNAETQRQEQLKKSTRK-DEVSISDEAIKLLQAQKSGEVDAERA 79
           MKIN    +N +NPY+R A   R E+  K+T+K D+V IS  A +L   Q++ +  +ER 
Sbjct: 1   MKINRIQPMN-VNPYERTA---RIEKPTKATKKTDQVEISSAAKEL---QEAAKFSSERL 53

Query: 80  SRIESLKQQVSAGTYQVDAAKLAASLAPYFKQ 111
            ++E LK +V AGTY +DA  +A S+  Y+K+
Sbjct: 54  EKVERLKSEVEAGTYTIDARAIAESVLRYYKR 85


>C5D7U0.1 C5D7U0_9BACI Anti-sigma-28 factor, FlgM
          Length = 87

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 5/90 (5%)

Query: 21  MKINETGRINAINPYQRNAETQRQEQLKKSTRKDEVSISDEAIKLLQAQKSGEVDAERAS 80
           MKI+  G +N +NPY+R    + + Q+  + +KD+V IS+ A +L +A K    ++ R  
Sbjct: 1   MKIHHIGPMN-VNPYERQF-NKVERQVPSTRKKDQVEISEAAKELQEASKW---ESARQE 55

Query: 81  RIESLKQQVSAGTYQVDAAKLAASLAPYFK 110
           ++E LKQQV  GTY +D   +A S+  Y++
Sbjct: 56  KVERLKQQVQNGTYTIDPQAIAKSIIHYYR 85


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.308    0.122    0.308 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 504,113,638
Number of extensions: 15290282
Number of successful extensions: 78847
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 78880
Number of HSP's successfully gapped: 11
Length of query: 115
Length of database: 3,060,696,203
Length adjustment: 82
Effective length of query: 33
Effective length of database: 2,288,172,973
Effective search space: 75509708109
Effective search space used: 75509708109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 125 (52.8 bits)