BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0004.p
         (144 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7G6.1 B3K7G6_9BACI Flagellar protein                               162   1e-38
B1DEB5.1 B1DEB5_9BACL Flagellar protein                               152   1e-35
C0Z6X1.1 C0Z6X1_BREBN Putative uncharacterized protein yvyF           122   1e-26
C5D7U1.1 C5D7U1_9BACI Flagellar protein                               103   6e-21
B4BNA7.1 B4BNA7_9BACI Flagellar protein                               102   1e-20

>B3K7G6.1 B3K7G6_9BACI Flagellar protein
          Length = 136

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 98/135 (72%)

Query: 10  MNLDNCPRCGRLYVKNIMELCQPCVKDLEHQYEICVNYLRENRGTNIQELSDATEIPIKE 69
           MNL NCPRCG+LY  NI E+C  C+K +E +YE C  +LRE +G  I E+S+ATE+ +++
Sbjct: 1   MNLGNCPRCGKLYTVNIREMCPECMKVIEKEYEKCATFLREQKGATIHEVSEATEVSVRQ 60

Query: 70  ITRFIREGRISIANAPNMMYPCEVCGTLIREGHMCDSCRSRLRKDLSNAAKEIAPTDTPK 129
           IT+FI+EGRISIANAPN+ YPCEVCGTLIRE +MC+SCR+RL ++L  AA          
Sbjct: 61  ITKFIKEGRISIANAPNLAYPCEVCGTLIRESNMCESCRTRLTRELRQAAAGDQEHQPGS 120

Query: 130 KLGEGAYRAVDKLRE 144
           +     Y AVDKLR+
Sbjct: 121 RKDRETYSAVDKLRK 135


>B1DEB5.1 B1DEB5_9BACL Flagellar protein
          Length = 139

 Score =  152 bits (383), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 97/132 (73%)

Query: 10  MNLDNCPRCGRLYVKNIMELCQPCVKDLEHQYEICVNYLRENRGTNIQELSDATEIPIKE 69
           MN+DNCPRCG+++ KN  ++C  C+++++ +YE+C  YLRE +G  I EL DAT + IK+
Sbjct: 2   MNVDNCPRCGKIFAKNFRDVCPACIREIDKEYELCSTYLREQKGAVITELHDATGVSIKQ 61

Query: 70  ITRFIREGRISIANAPNMMYPCEVCGTLIREGHMCDSCRSRLRKDLSNAAKEIAPTDTPK 129
           IT+FI+EGRIS+ NAPN+MYPCEVCGTLIRE ++C +CR+RL KD  +  ++ A     +
Sbjct: 62  ITKFIKEGRISLLNAPNLMYPCEVCGTLIRENNICSNCRARLLKDTQHMHEDEARNAALR 121

Query: 130 KLGEGAYRAVDK 141
                +Y+ +DK
Sbjct: 122 AEERVSYKGIDK 133


>C0Z6X1.1 C0Z6X1_BREBN Putative uncharacterized protein yvyF
          Length = 142

 Score =  122 bits (305), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 88/130 (67%), Gaps = 4/130 (3%)

Query: 12  LDNCPRCGRLYVKNIMELCQPCVKDLEHQYEICVNYLR--ENRGTNIQELSDATEIPIKE 69
           L NC RC  ++V+ + ++C  C K++E +YE C  YLR  ENRG+NI ++S+AT + +K+
Sbjct: 6   LANCSRCDAVFVQAVRDICPKCNKEVEQEYEACAQYLRKRENRGSNIHQVSEATGVSVKQ 65

Query: 70  ITRFIREGRISIANAPNMMYPCEVCGTLIREGHMCDSCRSRLRKDLSNAAKEIAPTDTPK 129
           IT+FI+EGRIS+A +PN+ YPCE CG LIR G++C+SC   L+ +++   +     D  +
Sbjct: 66  ITKFIKEGRISVAGSPNLGYPCERCGFLIRAGNICESCLKGLKHEITQQLEVEQRLDEFQ 125

Query: 130 K--LGEGAYR 137
           +  L   AYR
Sbjct: 126 RAELANAAYR 135


>C5D7U1.1 C5D7U1_9BACI Flagellar protein
          Length = 135

 Score =  103 bits (256), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 12  LDNCPRCGRLYVKN-IMELCQPCVKDLEHQYEICVNYLR--ENRGTNIQELSDATEIPIK 68
           L NCPRCGRL+VK+ I ++C+ C K+ E  +E    +LR  ENR   + ++ +AT +   
Sbjct: 4   LTNCPRCGRLFVKHSIRDVCEQCYKEEEALFEKVYQFLRKRENRTATMAQVVEATGVSES 63

Query: 69  EITRFIREGRISIANAPNMMYPCEVCGTLIREGHMCDSCRSRLRKDLSNAAKE 121
            IT++I+ GR+ + + PN+ YPCE CGT+IREG +C  CR+R +  L    KE
Sbjct: 64  LITKWIKIGRLQLVHFPNLGYPCESCGTMIREGQLCPKCRTRFQTQLKQLEKE 116


>B4BNA7.1 B4BNA7_9BACI Flagellar protein
          Length = 140

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 73/107 (68%), Gaps = 3/107 (2%)

Query: 12  LDNCPRCGRLYVK-NIMELCQPCVKDLEHQYEICVNYLR--ENRGTNIQELSDATEIPIK 68
           L NC +CGRL+V+ +  ++C+ C ++ E Q+E    +LR  ENR   + ++ +AT +  K
Sbjct: 4   LANCTKCGRLFVRMSTRDVCESCYQEEERQFERVYTFLRKRENRTATMAQIVEATGVAEK 63

Query: 69  EITRFIREGRISIANAPNMMYPCEVCGTLIREGHMCDSCRSRLRKDL 115
            IT++IREGR+ +   PN+ YPCE CGT+IREG +C +C  +L+KDL
Sbjct: 64  LITKWIREGRLQLVRFPNLTYPCESCGTMIREGRLCANCLGKLQKDL 110


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 831,361,330
Number of extensions: 30203645
Number of successful extensions: 89529
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 89473
Number of HSP's successfully gapped: 56
Length of query: 144
Length of database: 3,060,696,203
Length adjustment: 107
Effective length of query: 37
Effective length of database: 2,052,647,598
Effective search space: 75947961126
Effective search space used: 75947961126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)