BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0526.0003.p (206 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7G7.1 B3K7G7_9BACI Amidophosphoribosyltransferase-like protein 149 2e-34 B1DEB6.1 B1DEB6_9BACL Amidophosphoribosyltransferase-like protein 143 1e-32 Q9RUJ7.1 Q9RUJ7_DEIRA Competence protein ComF, putative 81 6e-14 Q0B0G4.1 Q0B0G4_SYNWW Phosphoribosyltransferase 80 1e-13 C0GTK3.1 C0GTK3_9DELT ComF family protein 79 2e-13 >B3K7G7.1 B3K7G7_9BACI Amidophosphoribosyltransferase-like protein Length = 232 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 116/216 (53%), Gaps = 28/216 (12%) Query: 1 VAYTSGMREILGQYKYRGNERLGPLLGLMLDQAYTILQAERGQMPRDGGSKQRHPLIPAF 60 V Y + MRE L QYKYRGNER PLL ML +AYT+ E D H L Sbjct: 6 VTYDAQMREWLAQYKYRGNERYAPLLVEMLLRAYTMFHREANVYMLD------HRL---- 55 Query: 61 KSKRTRLWQADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVPQLPLLVRTHHTGKQS 120 ++ R+ W + VPVS RL ERGFNQAE LA L+ P PLL R HT KQS Sbjct: 56 RNARSVTWSIHAVTSVPVSQERLRERGFNQAEVLAMGLAASIKTPYAPLLERNRHTNKQS 115 Query: 121 FKSRAERLADMKHAF-AVNPDPAVDSQFAHWLEVSGQGRGAL-----------PLQIIIV 168 FKSR +RL DM+ F A+ P V W +S +G + PL+I++V Sbjct: 116 FKSRVDRLKDMEGVFGALQHAPEV-----LW-SISKRGAANIGSPEEILPIIGPLRILLV 169 Query: 169 DDIYTTGSTIRACAETIAGLAGSFGCSAEIYSLTWA 204 DDIYTTGSTI ACA+ + G EI+SLTWA Sbjct: 170 DDIYTTGSTINACAQVLRGYESFLEMPIEIHSLTWA 205 >B1DEB6.1 B1DEB6_9BACL Amidophosphoribosyltransferase-like protein Length = 294 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 111/206 (53%), Gaps = 21/206 (10%) Query: 1 VAYTSGMREILGQYKYRGNERLGPLLGLMLDQAYTILQAERGQMPRDGGSKQRHPLIPAF 60 V Y+S MRE L QYKYRGNERL PLL M+ A+ + E KQ P+ Sbjct: 110 VQYSSEMREWLAQYKYRGNERLEPLLAQMMLPAFEAITKE--------AEKQSFSTQPS- 160 Query: 61 KSKRTRLWQADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVPQLPLLVRTHHTGKQS 120 + +W D + VPVS R ERGFNQAER A +L++ +P LLVR HT KQS Sbjct: 161 ---SSPIW--DAVTFVPVSMERAEERGFNQAERFASILAKHHQLPLYDLLVRERHTEKQS 215 Query: 121 FKSRAERLADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPLQIIIVDDIYTTGSTIRA 180 FKSR ER+ D K F D Q V A ++I++VDDIYTTGSTI A Sbjct: 216 FKSRLERMKDTKRLFHARTDTMALLQ----SNVHKSPMNAQSIRILLVDDIYTTGSTIGA 271 Query: 181 CAETIAGLAGSFGCSAEIYSLTWARS 206 CA A L +IY+LTWARS Sbjct: 272 CA---AALHQHSEVPLDIYALTWARS 294 >Q9RUJ7.1 Q9RUJ7_DEIRA Competence protein ComF, putative Length = 219 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 21/119 (17%) Query: 68 WQADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVPQLPLLVRTHHTGKQSFKSRAER 127 WQ +VPVP+ SR ERG+NQAE LA ++ GVP LPLL RT T +Q+ +ER Sbjct: 106 WQIAAVVPVPLHPSRQRERGYNQAELLAQAMAAELGVPCLPLLTRTRATAQQAKLHASER 165 Query: 128 LADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPL-QIIIVDDIYTTGSTIRACAETI 185 +++ AFAV RGA+P ++I+DD+ TTGST+ AC + + Sbjct: 166 SSNLAGAFAV--------------------RGAVPPGTLLILDDVLTTGSTLLACRDAL 204 >Q0B0G4.1 Q0B0G4_SYNWW Phosphoribosyltransferase Length = 239 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 23/156 (14%) Query: 50 SKQRHPLIPAFKSKRTRLWQADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVPQLP- 108 +K+ ++ + R W D++VPVP+S L +RGFNQ E LA + RR + P Sbjct: 101 AKKMGDMMAEVVEREPRFWPLDIIVPVPISQGNLRQRGFNQTELLARQIGRRLKIAVEPG 160 Query: 109 LLVRTHHTGKQSFKSRAERLADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPLQIIIV 168 +LVR T Q +R ER ++ +AF V Q + L +I++V Sbjct: 161 ILVRIKETPSQRELTREEREKNLLYAFKVT-----------------QPQKVLGKKILLV 203 Query: 169 DDIYTTGSTIRACAETIAGLAGSFGCSAEIYSLTWA 204 DD+YTTGSTIR C + AG + + +TWA Sbjct: 204 DDVYTTGSTIRECTRVLLE-AG----AERVSVITWA 234 >C0GTK3.1 C0GTK3_9DELT ComF family protein Length = 262 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 47/184 (25%) Query: 3 YTSGMREILGQYKYRGNERLGPLLGLMLDQAYTILQAERGQMPRDGGSKQRHPLIPAFKS 62 Y +RE++ +K++G+ LG +LG ML QA GQ GG K Sbjct: 107 YQDRLRELILCFKFKGDLGLGRVLGGMLVQA--------GQY--HGGVK----------- 145 Query: 63 KRTRLWQADLLVPVPVSDSRLAERGFNQAERLADVLSRRRGVP-QLPLLVRTHHTGKQSF 121 AD++VPVP+ +S+L RGFNQ+ LA + S G Q +V+ T QS Sbjct: 146 -------ADMVVPVPMHESKLKMRGFNQSLELARIFSASTGFQLQHRAMVKKRPTAAQSS 198 Query: 122 KSRAERLADMKHAFAVNPDPAVDSQFAHWLEVSGQGRGALPLQIIIVDDIYTTGSTIRAC 181 +R +R+ ++K AF AH V GQ I++VDDIYTTGST+ C Sbjct: 199 LNRKDRMKELKGAFE-----------AHAGVVRGQ-------SILLVDDIYTTGSTLEEC 240 Query: 182 AETI 185 T+ Sbjct: 241 TRTL 244 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,277,526,054 Number of extensions: 53605371 Number of successful extensions: 105911 Number of sequences better than 1.0e-05: 482 Number of HSP's gapped: 105924 Number of HSP's successfully gapped: 482 Length of query: 206 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 77 Effective length of database: 1,845,385,268 Effective search space: 142094665636 Effective search space used: 142094665636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)