BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0526.0002.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7G9.1 B3K7G9_9BACI Helicase domain protein 259 2e-67 B1DEB7.1 B1DEB7_9BACL Helicase domain protein 228 4e-58 C0Z6X3.1 C0Z6X3_BREBN Truncated late competence protein ComFA 171 5e-41 C2ZFA5.1 C2ZFA5_BACCE Helicase domain protein 165 2e-39 C2ZWU7.1 C2ZWU7_BACCE Helicase domain protein 165 3e-39 >B3K7G9.1 B3K7G9_9BACI Helicase domain protein Length = 633 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/205 (63%), Positives = 157/205 (76%) Query: 17 FIYLSATPPEELQRLARSGKLPHARVPVRFHGHPLPVPQHLEVPPLQISLQRGALPAKLL 76 +IYLSATPP LQR A +G+LPHA+VP RFHGHPLPVPQ L++ + LQ L L+ Sbjct: 420 YIYLSATPPTPLQREAAAGRLPHAKVPARFHGHPLPVPQKLKMFAVSRCLQEKKLSPLLV 479 Query: 77 QALRKSFAREAQIFLFVSRIAHIERLLALLRQSFSGAAMEGTSSQDPARTEKVAAFRSRS 136 ++L S R AQ+FLFVSRI HI+ +L LLR++ + +EGTSS DP R KV +FR+R Sbjct: 480 RSLSASLRRGAQVFLFVSRIKHIDPILELLRKAIANMPIEGTSSIDPERAGKVMSFRNRE 539 Query: 137 ISLLVTTTILERGVTVPRSDVLILDADSSLFDEASLVQMAGRAGRSKEDPAGTVVFLSPQ 196 I LLVTTTILERGVTVP+SDV ILDADS LFDEA+L+QMAGRAGRSK+DPAG VVF +PQ Sbjct: 540 IRLLVTTTILERGVTVPKSDVYILDADSELFDEAALIQMAGRAGRSKDDPAGRVVFAAPQ 599 Query: 197 WTKSQRGAVAQIRTMNTIARRQGYL 221 WT+ Q AV QI+ MN IA + GYL Sbjct: 600 WTRCQSSAVRQIKAMNRIAGKGGYL 624 >B1DEB7.1 B1DEB7_9BACL Helicase domain protein Length = 698 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 122/204 (59%), Positives = 146/204 (71%) Query: 18 IYLSATPPEELQRLARSGKLPHARVPVRFHGHPLPVPQHLEVPPLQISLQRGALPAKLLQ 77 + LSATPP ELQR +SG+L HARVPVR+H HPLPVP L P + LQ +P LL Sbjct: 465 LLLSATPPTELQRRVKSGQLSHARVPVRYHRHPLPVPVLLRTPTVAKLLQTRKIPRALLA 524 Query: 78 ALRKSFAREAQIFLFVSRIAHIERLLALLRQSFSGAAMEGTSSQDPARTEKVAAFRSRSI 137 AL S R+AQ+F+FV RI+ +E + LL +A+EGTSSQDP R +KV+ FR I Sbjct: 525 ALNHSLDRDAQLFIFVQRISQVEPMAKLLSVLLKLSAVEGTSSQDPDRADKVSRFRKSEI 584 Query: 138 SLLVTTTILERGVTVPRSDVLILDADSSLFDEASLVQMAGRAGRSKEDPAGTVVFLSPQW 197 +LVTTTILERGVT+PRSDV ILDAD LFDEASLVQMAGRAGRS +DP G V F + Sbjct: 585 RVLVTTTILERGVTIPRSDVYILDADGRLFDEASLVQMAGRAGRSGDDPNGFVYFCGRER 644 Query: 198 TKSQRGAVAQIRTMNTIARRQGYL 221 T +Q AV+QIR MN IAR++GYL Sbjct: 645 TGAQAAAVSQIRAMNRIARKRGYL 668 >C0Z6X3.1 C0Z6X3_BREBN Truncated late competence protein ComFA Length = 289 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 138/227 (60%), Gaps = 16/227 (7%) Query: 7 LRRGXXXXXXFIYLSATPPEELQR---------LARSGKLP-----HARVPVRFHGHPLP 52 L R +YLSATPP LQ+ + SG +P H +P R+HG LP Sbjct: 55 LSRAVKKNGKLLYLSATPPGYLQKRLVRKGRSTIGSSGAIPLFSDTHVLLPGRYHGAALP 114 Query: 53 VPQHLEVPPLQISLQRGALPAKLLQALRKSFAREAQIFLFVSRIAHIERLLALLRQSFSG 112 VP+ L V L +Q + A + A+R S ++ Q+F+FV R+ I+R+L+ LR+ Sbjct: 115 VPKILTVQGLHKRVQTNRIVAPFIDAVRTSLNKDRQVFVFVPRVDEIDRVLSYLRKWLPA 174 Query: 113 --AAMEGTSSQDPARTEKVAAFRSRSISLLVTTTILERGVTVPRSDVLILDADSSLFDEA 170 M G + DP R EKV AFR + +++VTTTILERGVT+P+SDV+++ A++ +FDEA Sbjct: 175 HVGEMAGVHAADPMREEKVLAFREKRYTVMVTTTILERGVTIPKSDVVVVGAEAPVFDEA 234 Query: 171 SLVQMAGRAGRSKEDPAGTVVFLSPQWTKSQRGAVAQIRTMNTIARR 217 SLVQ+AGR GRS +D G+V+FL + + + AV QI MN++A+R Sbjct: 235 SLVQIAGRVGRSVDDTTGSVLFLQAERSTPPKRAVRQISQMNSLAQR 281 >C2ZFA5.1 C2ZFA5_BACCE Helicase domain protein Length = 449 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/205 (42%), Positives = 124/205 (60%), Gaps = 2/205 (0%) Query: 18 IYLSATPPEELQRLARSGKLPHARVPVRFHGHPLPVPQHLEVPPLQISLQRGALPAKLLQ 77 IYL+A P E +R R+GK +P R+H HPLPVP + L R +P LLQ Sbjct: 247 IYLTAIPDETWKRKLRNGKQKGIVIPCRYHRHPLPVPVFRWCGNWKKGLMRKKIPRALLQ 306 Query: 78 ALRKSFAREAQIFLFVSRIAHIERLLALLRQSFSGAAMEGTSSQDPARTEKVAAFRSRSI 137 L + +++ IFLFV + ++E + LL+ ++G ++DPAR EKVAAFR I Sbjct: 307 WLNRYLSKQYPIFLFVPHVRYVEEISQLLKSL--NNQIDGVHAEDPARKEKVAAFRKGEI 364 Query: 138 SLLVTTTILERGVTVPRSDVLILDADSSLFDEASLVQMAGRAGRSKEDPAGTVVFLSPQW 197 LLVTTTILERGVTV V +L A+ +F E++LVQ+AGRAGRS ++P G V++ Sbjct: 365 HLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALVQIAGRAGRSSDEPHGDVIYFHYGK 424 Query: 198 TKSQRGAVAQIRTMNTIARRQGYLD 222 T++ A I++MN A+ QG +D Sbjct: 425 TEAMVRAKKHIQSMNKNAKEQGLID 449 >C2ZWU7.1 C2ZWU7_BACCE Helicase domain protein Length = 450 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/205 (42%), Positives = 124/205 (60%), Gaps = 2/205 (0%) Query: 18 IYLSATPPEELQRLARSGKLPHARVPVRFHGHPLPVPQHLEVPPLQISLQRGALPAKLLQ 77 IYL+A P E +R R+GK +P R+H HPLPVP + L R +P LLQ Sbjct: 248 IYLTAIPDETWKRKLRNGKQKGIVIPCRYHRHPLPVPVFRWCGNWKKGLMRKKIPRALLQ 307 Query: 78 ALRKSFAREAQIFLFVSRIAHIERLLALLRQSFSGAAMEGTSSQDPARTEKVAAFRSRSI 137 L + +++ IFLFV + ++E + LL+ ++G ++DPAR EKVAAFR I Sbjct: 308 WLNRYLSKQYPIFLFVPHVRYVEEISQLLKSL--NNQIDGVHAEDPARKEKVAAFRKGEI 365 Query: 138 SLLVTTTILERGVTVPRSDVLILDADSSLFDEASLVQMAGRAGRSKEDPAGTVVFLSPQW 197 LLVTTTILERGVTV V +L A+ +F E++LVQ+AGRAGRS ++P G V++ Sbjct: 366 HLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALVQIAGRAGRSSDEPHGDVIYFHYGK 425 Query: 198 TKSQRGAVAQIRTMNTIARRQGYLD 222 T++ A I++MN A+ QG +D Sbjct: 426 TEAMVRAKKHIQSMNKNAKEQGLID 450 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,171,864,340 Number of extensions: 44305858 Number of successful extensions: 130014 Number of sequences better than 1.0e-05: 384 Number of HSP's gapped: 131659 Number of HSP's successfully gapped: 384 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)