BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0055.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D895.1 B1D895_9BACL Phosphate ABC transporter, inner membrane ... 343 9e-93 A8FF78.1 A8FF78_BACP2 Phosphate ABC superfamily ATP binding cass... 296 1e-78 B4ANA0.1 B4ANA0_BACPU Phosphate ABC transporter, permease protei... 296 1e-78 P46339.2 YQGH_BACSU Probable ABC transporter permease protein yqgH 294 5e-78 Q65HB7.1 Q65HB7_BACLD PstC 290 7e-77 >B1D895.1 B1D895_9BACL Phosphate ABC transporter, inner membrane subunit PstC Length = 300 Score = 343 bits (880), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 170/249 (68%), Positives = 198/249 (79%) Query: 4 CXXXXXXXXXSMVYFVASKGISTFTSGDVKITEFLFGTKWSPEGDAPSYGAFPFIAGSFL 63 C SMVYFVASKG+STF V + + L G KW P+G+ +GA PFI GSF Sbjct: 27 CILFLIITIFSMVYFVASKGLSTFIVNGVNVKDLLTGLKWKPDGEPALFGALPFIFGSFS 86 Query: 64 VTLIAALIASPLSICAALFMTEIVPGWGKKLLQPVIELLSGIPSVVYGFVGLSVIVPFLR 123 +++AA+IA+PL CAA+FM E+ P G+ +QPVIELL+GIPSVVYGFVGLSVIVP R Sbjct: 87 TSILAAIIAAPLGFCAAVFMIELSPKLGRTFMQPVIELLAGIPSVVYGFVGLSVIVPLFR 146 Query: 124 NTFPGQGIGVAAGALVLSVMILPTITSVAADALASLPQNLKESSFALGATRWQTIARVIL 183 N FPGQG+G+AAGA+VL+ MILPTIT++A DALASLP LKE S+ALGATRWQTI R++L Sbjct: 147 NLFPGQGVGIAAGAIVLAFMILPTITTIATDALASLPAGLKEGSYALGATRWQTIYRIVL 206 Query: 184 PTTFPAIMTGVVLGMARAFGEALAVQMVIGNAPFVPKSLFESASTLTSVITLSMGNTTMG 243 PTT PA MTG+VLG+ARAFGEALAVQMVIGNAP +P SLFES STLTS ITLSMGNT MG Sbjct: 207 PTTLPAQMTGIVLGIARAFGEALAVQMVIGNAPHIPHSLFESTSTLTSAITLSMGNTAMG 266 Query: 244 SPQNNALWS 252 S QNNALWS Sbjct: 267 SVQNNALWS 275 >A8FF78.1 A8FF78_BACP2 Phosphate ABC superfamily ATP binding cassette transporter, membrane protein Length = 308 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 146/253 (57%), Positives = 187/253 (73%), Gaps = 1/253 (0%) Query: 1 MSFCXXXXXXXXXSMVYFVASKGISTFTSGDVKITEFLFGTKWSPEGDAPSYGAFPFIAG 60 + FC ++ F+ KG+ +F V EFL W+P + P YGAFPFI G Sbjct: 31 VRFCAFLMIAVSIAITIFLGIKGLQSFIVNGVSPIEFLTSINWNPTAENPQYGAFPFIFG 90 Query: 61 SFLVTLIAALIASPLSICAALFMTEIVPGWGKKLLQPVIELLSGIPSVVYGFVGLSVIVP 120 S VTL++ALIA+PL I A+FMTEI P WG+K+LQPVIELL GIPSVVYGF+GL+V+VP Sbjct: 91 SIAVTLLSALIAAPLGIAGAIFMTEIAPAWGRKILQPVIELLVGIPSVVYGFIGLTVLVP 150 Query: 121 FLRN-TFPGQGIGVAAGALVLSVMILPTITSVAADALASLPQNLKESSFALGATRWQTIA 179 F+ + G G V AG +VLS+MILPT+TS+A DA+ SLP++L+E S+ALGATRWQTI Sbjct: 151 FIGHFKSSGSGHSVLAGTIVLSIMILPTVTSIATDAMGSLPKSLREGSYALGATRWQTIR 210 Query: 180 RVILPTTFPAIMTGVVLGMARAFGEALAVQMVIGNAPFVPKSLFESASTLTSVITLSMGN 239 RV++P P +MT VVLGMARAFGEALAVQMVIGN +P+S+ ++A TLT++ITL+MG+ Sbjct: 211 RVLVPAALPTLMTAVVLGMARAFGEALAVQMVIGNTRNLPESIMDTAGTLTTIITLNMGH 270 Query: 240 TTMGSPQNNALWS 252 TT GS +NN LWS Sbjct: 271 TTYGSVENNTLWS 283 >B4ANA0.1 B4ANA0_BACPU Phosphate ABC transporter, permease protein PstC Length = 308 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 146/253 (57%), Positives = 187/253 (73%), Gaps = 1/253 (0%) Query: 1 MSFCXXXXXXXXXSMVYFVASKGISTFTSGDVKITEFLFGTKWSPEGDAPSYGAFPFIAG 60 + FC ++ F+ KG+ +F V EFL W+P + P YGAFPFI G Sbjct: 31 VRFCAFLMIAVSIAITIFLGIKGLQSFIVNGVSPIEFLTSINWNPTAENPQYGAFPFIFG 90 Query: 61 SFLVTLIAALIASPLSICAALFMTEIVPGWGKKLLQPVIELLSGIPSVVYGFVGLSVIVP 120 S VTL++ALIA+PL I A+FMTEI P WG+K+LQPVIELL GIPSVVYGF+GL+V+VP Sbjct: 91 SIAVTLLSALIAAPLGIAGAIFMTEIAPAWGRKILQPVIELLVGIPSVVYGFIGLTVLVP 150 Query: 121 FLRN-TFPGQGIGVAAGALVLSVMILPTITSVAADALASLPQNLKESSFALGATRWQTIA 179 F+ + G G V AG +VLS+MILPT+TS+A DA+ SLP++L+E S+ALGATRWQTI Sbjct: 151 FIGHFKSSGSGHSVLAGTIVLSIMILPTVTSIATDAMGSLPKSLREGSYALGATRWQTIR 210 Query: 180 RVILPTTFPAIMTGVVLGMARAFGEALAVQMVIGNAPFVPKSLFESASTLTSVITLSMGN 239 RV++P P +MT VVLGMARAFGEALAVQMVIGN +P+S+ ++A TLT++ITL+MG+ Sbjct: 211 RVLVPAALPTLMTAVVLGMARAFGEALAVQMVIGNTRNLPESIMDTAGTLTTIITLNMGH 270 Query: 240 TTMGSPQNNALWS 252 TT GS +NN LWS Sbjct: 271 TTYGSVENNTLWS 283 >P46339.2 YQGH_BACSU Probable ABC transporter permease protein yqgH Length = 309 Score = 294 bits (753), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 147/250 (58%), Positives = 185/250 (74%), Gaps = 1/250 (0%) Query: 4 CXXXXXXXXXSMVYFVASKGISTFTSGDVKITEFLFGTKWSPEGDAPSYGAFPFIAGSFL 63 C ++ F+ KG+ +F V EFL W+P P YG PFI GSF Sbjct: 35 CALIMIAASVAITIFLGVKGLQSFLVNGVSPIEFLTSLNWNPTDSDPKYGVLPFIFGSFA 94 Query: 64 VTLIAALIASPLSICAALFMTEIVPGWGKKLLQPVIELLSGIPSVVYGFVGLSVIVPFLR 123 VT+++ALIA+PL I A+FMTEI P WGKK+LQPVIELL GIPSVVYGF+GL+V+VPF+ Sbjct: 95 VTILSALIAAPLGIAGAIFMTEIAPNWGKKVLQPVIELLVGIPSVVYGFIGLTVLVPFIA 154 Query: 124 N-TFPGQGIGVAAGALVLSVMILPTITSVAADALASLPQNLKESSFALGATRWQTIARVI 182 G G + AG +VLSVMILPTITS++ADA+ASLP++L+E S+ALGATRWQTI +V+ Sbjct: 155 QFKSSGTGHSLLAGTIVLSVMILPTITSISADAMASLPKSLREGSYALGATRWQTIRKVL 214 Query: 183 LPTTFPAIMTGVVLGMARAFGEALAVQMVIGNAPFVPKSLFESASTLTSVITLSMGNTTM 242 +P FP +MT VVLGMARAFGEALAVQMVIGN +P+S F++A TLT++ITL+MG+TT Sbjct: 215 VPAAFPTLMTAVVLGMARAFGEALAVQMVIGNTRVLPESPFDTAGTLTTIITLNMGHTTY 274 Query: 243 GSPQNNALWS 252 GS +NN LWS Sbjct: 275 GSVENNTLWS 284 >Q65HB7.1 Q65HB7_BACLD PstC Length = 309 Score = 290 bits (743), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 143/250 (57%), Positives = 186/250 (74%), Gaps = 1/250 (0%) Query: 4 CXXXXXXXXXSMVYFVASKGISTFTSGDVKITEFLFGTKWSPEGDAPSYGAFPFIAGSFL 63 C S+ F+ +KG+ +F + V EFL W+P + P YGA PFI GSF Sbjct: 35 CAFIMMAAAISITIFLGNKGLQSFLANGVSPIEFLTSLDWNPTNENPEYGALPFILGSFA 94 Query: 64 VTLIAALIASPLSICAALFMTEIVPGWGKKLLQPVIELLSGIPSVVYGFVGLSVIVPFLR 123 VTL+A+LIA+PL I A+FMTEI P WG+K+LQPV+ELL GIPSVVYGF+GL+V+VPF+ Sbjct: 95 VTLLASLIAAPLGIGGAIFMTEIAPSWGRKVLQPVVELLVGIPSVVYGFIGLTVLVPFIS 154 Query: 124 N-TFPGQGIGVAAGALVLSVMILPTITSVAADALASLPQNLKESSFALGATRWQTIARVI 182 G G + AG +VL+VMILPT+TS++ DAL SLP+NL+E S+ALGATRWQTI +V+ Sbjct: 155 QFKSSGSGHSLLAGTIVLAVMILPTVTSISTDALMSLPKNLREGSYALGATRWQTIRKVL 214 Query: 183 LPTTFPAIMTGVVLGMARAFGEALAVQMVIGNAPFVPKSLFESASTLTSVITLSMGNTTM 242 +P P+++T VVLGMARAFGEALAVQMVIGN+ + +SL + A TLT++ITL+MG+TT Sbjct: 215 IPAALPSLLTAVVLGMARAFGEALAVQMVIGNSRNLFESLLDPAGTLTTIITLNMGHTTY 274 Query: 243 GSPQNNALWS 252 GS +NN LWS Sbjct: 275 GSVENNTLWS 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,381,493,014 Number of extensions: 53684371 Number of successful extensions: 209121 Number of sequences better than 1.0e-05: 4905 Number of HSP's gapped: 206528 Number of HSP's successfully gapped: 4968 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)