BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0052.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q0SQM1.1 Q0SQM1_CLOPS Putative uncharacterized protein 338 4e-91 B1RPA3.1 B1RPA3_CLOPE Putative uncharacterized protein 337 6e-91 B1R7Q9.1 B1R7Q9_CLOPE Putative uncharacterized protein 337 7e-91 Q0TMX5.1 Q0TMX5_CLOP1 Putative uncharacterized protein 337 9e-91 B1V443.1 B1V443_CLOPE Putative uncharacterized protein 337 9e-91 >Q0SQM1.1 Q0SQM1_CLOPS Putative uncharacterized protein Length = 270 Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 160/264 (60%), Positives = 202/264 (76%), Gaps = 7/264 (2%) Query: 18 EKQPVVPSSEELWNEDTYTAWTTRFGSPAEAAAKLMKDPAAKLYPLLNYLGEIRGKKIMN 77 +K+ + +EE WN++TY AW RFG+ EAA K+ P KL LL+ G+++GKKI N Sbjct: 12 DKKVCINENEEAWNKETYNAWVKRFGTAKEAAEKIKSMPEKKLNVLLDKFGDVKGKKIFN 71 Query: 78 LMGSNGMKAVALGLLGAEASVADFSEANARYAGELAEAAGVPLAYTVSDVLKLPEELLNH 137 LMGSNG KAVAL LLGA+ +V DFSE N RYA +LAEA GV + + +SDVLK+P+E+++ Sbjct: 72 LMGSNGNKAVALALLGADVTVVDFSEGNRRYALDLAEACGVKINFILSDVLKMPKEVMSG 131 Query: 138 TYDIVFAEMGIVHYFTDLAPFMDTVCQLLTPGGRFVLRDFHPVTTKLISSKGSTAKVRKH 197 YDIVFAEMGI+HYF+DL+PFM+ + LL GG+ VLRDFHPV+TKLI+S+GSTAKVRKH Sbjct: 132 DYDIVFAEMGILHYFSDLSPFMNVIHSLLKDGGKAVLRDFHPVSTKLITSRGSTAKVRKH 191 Query: 198 KVSGDYFDTALEEKKVSYSKYLPSSGGAEGAGRHSVVHWRRWTLGEIVTAAAGSGLVIRE 257 KV+GDYFDT+LEEK+V+YSKYL G+ V R+W LGEIVTA A +GL I Sbjct: 192 KVTGDYFDTSLEEKEVAYSKYLEE-------GKVEKVFLRKWNLGEIVTAVANTGLKIES 244 Query: 258 LAEEPNLSSDIYDKGIPKTFALVA 281 L EEPNLSSD++DKGIPKTF +VA Sbjct: 245 LTEEPNLSSDVFDKGIPKTFTIVA 268 >B1RPA3.1 B1RPA3_CLOPE Putative uncharacterized protein Length = 270 Score = 337 bits (864), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 160/264 (60%), Positives = 200/264 (75%), Gaps = 7/264 (2%) Query: 18 EKQPVVPSSEELWNEDTYTAWTTRFGSPAEAAAKLMKDPAAKLYPLLNYLGEIRGKKIMN 77 +K+ + +EE WN++TY AW RFG+ EAA K+ P KL LL+ G+++GKKI N Sbjct: 12 DKKVCINENEEAWNKETYNAWVKRFGTAKEAAEKIKSMPEKKLNVLLDKFGDVKGKKIFN 71 Query: 78 LMGSNGMKAVALGLLGAEASVADFSEANARYAGELAEAAGVPLAYTVSDVLKLPEELLNH 137 LMGSNG KAVAL LLGA+ +V DFSE N RYA +LAEA GV + + +SDVLK+P+E ++ Sbjct: 72 LMGSNGNKAVALALLGADVTVVDFSEGNKRYALDLAEACGVKINFILSDVLKMPKEFMSG 131 Query: 138 TYDIVFAEMGIVHYFTDLAPFMDTVCQLLTPGGRFVLRDFHPVTTKLISSKGSTAKVRKH 197 YDIVFAEMGI+HYF+DL+PFM+ + LL GG+ VLRDFHPV+TKLI+S+GSTAKVRKH Sbjct: 132 DYDIVFAEMGILHYFSDLSPFMNVIHSLLKDGGKTVLRDFHPVSTKLITSRGSTAKVRKH 191 Query: 198 KVSGDYFDTALEEKKVSYSKYLPSSGGAEGAGRHSVVHWRRWTLGEIVTAAAGSGLVIRE 257 KV+GDYFDT+LEEK+V+YSKYL G V R+W LGEIVTA A +GL I Sbjct: 192 KVTGDYFDTSLEEKEVAYSKYLEK-------GEVEKVFLRKWNLGEIVTAVANTGLKIES 244 Query: 258 LAEEPNLSSDIYDKGIPKTFALVA 281 L EEPNLSSD++DKGIPKTF +VA Sbjct: 245 LTEEPNLSSDVFDKGIPKTFTIVA 268 >B1R7Q9.1 B1R7Q9_CLOPE Putative uncharacterized protein Length = 270 Score = 337 bits (864), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 160/264 (60%), Positives = 200/264 (75%), Gaps = 7/264 (2%) Query: 18 EKQPVVPSSEELWNEDTYTAWTTRFGSPAEAAAKLMKDPAAKLYPLLNYLGEIRGKKIMN 77 +K+ + +EE WN++TY AW RFG+ EAA K+ P KL LL+ G+++GKKI N Sbjct: 12 DKKVCINENEEAWNKETYNAWVKRFGTAKEAAEKIKSMPEKKLNVLLDKFGDVKGKKIFN 71 Query: 78 LMGSNGMKAVALGLLGAEASVADFSEANARYAGELAEAAGVPLAYTVSDVLKLPEELLNH 137 LMGSNG KAVAL LLGA+ +V DFSE N RYA +LAEA GV + + +SDVLK+P+E ++ Sbjct: 72 LMGSNGNKAVALALLGADVTVVDFSEGNKRYALDLAEACGVKINFILSDVLKMPKEFMSG 131 Query: 138 TYDIVFAEMGIVHYFTDLAPFMDTVCQLLTPGGRFVLRDFHPVTTKLISSKGSTAKVRKH 197 YDIVFAEMGI+HYF+DL+PFM+ + LL GG+ VLRDFHPV+TKLI+S+GSTAKVRKH Sbjct: 132 DYDIVFAEMGILHYFSDLSPFMNVIHSLLKDGGKTVLRDFHPVSTKLITSRGSTAKVRKH 191 Query: 198 KVSGDYFDTALEEKKVSYSKYLPSSGGAEGAGRHSVVHWRRWTLGEIVTAAAGSGLVIRE 257 KV+GDYFDT+LEEK+V+YSKYL G V R+W LGEIVTA A +GL I Sbjct: 192 KVTGDYFDTSLEEKEVAYSKYLEE-------GEVEKVFLRKWNLGEIVTAVANTGLKIES 244 Query: 258 LAEEPNLSSDIYDKGIPKTFALVA 281 L EEPNLSSD++DKGIPKTF +VA Sbjct: 245 LTEEPNLSSDVFDKGIPKTFTIVA 268 >Q0TMX5.1 Q0TMX5_CLOP1 Putative uncharacterized protein Length = 270 Score = 337 bits (863), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 160/264 (60%), Positives = 201/264 (76%), Gaps = 7/264 (2%) Query: 18 EKQPVVPSSEELWNEDTYTAWTTRFGSPAEAAAKLMKDPAAKLYPLLNYLGEIRGKKIMN 77 +K+ + +EE WN++TY AW RFG+ EAA K+ P KL LL+ G+++GKKI N Sbjct: 12 DKKVCINENEEAWNKETYNAWVKRFGTAKEAAEKIKSMPEKKLNVLLDKFGDVKGKKIFN 71 Query: 78 LMGSNGMKAVALGLLGAEASVADFSEANARYAGELAEAAGVPLAYTVSDVLKLPEELLNH 137 LMGSNG KAVAL LLGA+ +V DFSE N RYA +LAEA GV + + +SDVLK+P+E+++ Sbjct: 72 LMGSNGNKAVALALLGADVTVVDFSEGNRRYALDLAEACGVKINFILSDVLKMPKEVMSG 131 Query: 138 TYDIVFAEMGIVHYFTDLAPFMDTVCQLLTPGGRFVLRDFHPVTTKLISSKGSTAKVRKH 197 YDIVFAEMGI+HYF+DL+PFM+ + LL GG+ VLRDFHPV+TKLI+S+GSTAKVRKH Sbjct: 132 DYDIVFAEMGILHYFSDLSPFMNVIHSLLKDGGKAVLRDFHPVSTKLITSRGSTAKVRKH 191 Query: 198 KVSGDYFDTALEEKKVSYSKYLPSSGGAEGAGRHSVVHWRRWTLGEIVTAAAGSGLVIRE 257 KV+GDYFDT+LEEK+V+YSKYL G V R+W LGEIVTA A +GL I Sbjct: 192 KVTGDYFDTSLEEKEVAYSKYLEE-------GEVEKVFLRKWNLGEIVTAVANTGLKIES 244 Query: 258 LAEEPNLSSDIYDKGIPKTFALVA 281 L EEPNLSSD++DKGIPKTF +VA Sbjct: 245 LTEEPNLSSDVFDKGIPKTFTIVA 268 >B1V443.1 B1V443_CLOPE Putative uncharacterized protein Length = 270 Score = 337 bits (863), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 160/264 (60%), Positives = 201/264 (76%), Gaps = 7/264 (2%) Query: 18 EKQPVVPSSEELWNEDTYTAWTTRFGSPAEAAAKLMKDPAAKLYPLLNYLGEIRGKKIMN 77 +K+ + +EE WN++TY AW RFG+ EAA K+ P KL LL+ G+++GKKI N Sbjct: 12 DKKVCINENEEAWNKETYNAWVKRFGTAKEAAEKIKSMPEKKLNVLLDKFGDVKGKKIFN 71 Query: 78 LMGSNGMKAVALGLLGAEASVADFSEANARYAGELAEAAGVPLAYTVSDVLKLPEELLNH 137 LMGSNG KAVAL LLGA+ +V DFSE N RYA +LAEA GV + + +SDVLK+P+E+++ Sbjct: 72 LMGSNGNKAVALALLGADVTVVDFSEGNRRYALDLAEACGVKINFILSDVLKMPKEVMSG 131 Query: 138 TYDIVFAEMGIVHYFTDLAPFMDTVCQLLTPGGRFVLRDFHPVTTKLISSKGSTAKVRKH 197 YDIVFAEMGI+HYF+DL+PFM+ + LL GG+ VLRDFHPV+TKLI+S+GSTAKVRKH Sbjct: 132 DYDIVFAEMGILHYFSDLSPFMNVIHSLLKDGGKAVLRDFHPVSTKLITSRGSTAKVRKH 191 Query: 198 KVSGDYFDTALEEKKVSYSKYLPSSGGAEGAGRHSVVHWRRWTLGEIVTAAAGSGLVIRE 257 KV+GDYFDT+LEEK+V+YSKYL G V R+W LGEIVTA A +GL I Sbjct: 192 KVTGDYFDTSLEEKEVAYSKYLEE-------GEVEKVFLRKWNLGEIVTAVANTGLKIES 244 Query: 258 LAEEPNLSSDIYDKGIPKTFALVA 281 L EEPNLSSD++DKGIPKTF +VA Sbjct: 245 LTEEPNLSSDVFDKGIPKTFTIVA 268 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,750,341,736 Number of extensions: 74690627 Number of successful extensions: 161473 Number of sequences better than 1.0e-05: 206 Number of HSP's gapped: 161217 Number of HSP's successfully gapped: 206 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)