BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0051.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAN1.1 B1DAN1_9BACL Putative uncharacterized protein 241 9e-62 B9IU29.1 B9IU29_BACCQ Membrane protein, putative 229 2e-58 B7I0E2.1 B7I0E2_BACC7 Putative membrane protein 229 2e-58 B5VBI4.1 B5VBI4_BACCE Putative membrane protein 229 2e-58 Q73BR8.1 Q73BR8_BACC1 Membrane protein, putative 229 3e-58 >B1DAN1.1 B1DAN1_9BACL Putative uncharacterized protein Length = 292 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 126/267 (47%), Positives = 169/267 (63%) Query: 12 NATKXXXXXXXXXXXGIVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAA 71 A+K GI+AISFS+IFIKWS+A SV GMYRL T L+MLP A Y Sbjct: 3 RASKSFSAYELLYVVGIIAISFSSIFIKWSSAEPSVIGMYRLYLTVLIMLPLAWKYKQEL 62 Query: 72 FALRRKDWXXXXXXXXXXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRS 131 + HFL WM SLK+T+VASST+ +ALEPV +MLG+Y+++K ++ Sbjct: 63 LYHTARQLLLLLASGVMLALHFLFWMSSLKHTTVASSTIFLALEPVLVMLGSYLIFKTKA 122 Query: 132 TXXXXXXXXXXXFGVVLIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSY 191 G V+IG D+ LS + L GD+LS+ GT+ VA H+LIG++L + ++ Sbjct: 123 NKMMLLGMGIAMIGTVIIGSSDLALSKEALYGDVLSILGTIAVALHMLIGKQLRSNTSAF 182 Query: 192 LYSLIVFITAAVVFAIYNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSA 251 Y+ +VF AA A+YNL+ G F Y EWGIF+LLA+VPT+FGH LFNWLL++ +A Sbjct: 183 AYNFLVFTIAATTLAVYNLIQGYRFTGYSSHEWGIFLLLAIVPTLFGHYLFNWLLKYMNA 242 Query: 252 TTVSMNILGEPVGASILAFLLLGEQLT 278 T VSM++LGEPV AS+LA+ LL E LT Sbjct: 243 TAVSMSVLGEPVIASLLAWALLKEALT 269 >B9IU29.1 B9IU29_BACCQ Membrane protein, putative Length = 303 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 163/251 (64%), Gaps = 1/251 (0%) Query: 28 IVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAAFALRRKDWXXXXXXXX 87 I+AISF+A+F+K S+AP+S+ MYRL LLMLP ++ KDW Sbjct: 15 IIAISFAAVFVKMSSAPSSILSMYRLWIIVLLMLPIVWKKQEEFSEIQIKDWGFLIGSGF 74 Query: 88 XXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXFGVV 147 HFLLW SLK+T+VASST+I+AL+P+ ++G + L+K+R+T GVV Sbjct: 75 FLALHFLLWFESLKHTTVASSTIILALQPIVSLVGGFFLFKERTTYSAIATMGIAILGVV 134 Query: 148 LIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVVFAI 207 IGWGD+GLS + GD+LS + V G+L IGQ V ++ ++YS VF A + I Sbjct: 135 CIGWGDLGLSEQAIYGDILSFLSVIAVVGYLFIGQTTVKKVSHWIYSFTVFAFAGIFMGI 194 Query: 208 YNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVGASI 267 YN++ +PF+ Y +W +F+LLAVVPTV H++ NWLL + +ATT+SM+ILGEPVGASI Sbjct: 195 YNIVLQVPFIGYTKWDWIVFLLLAVVPTV-SHVINNWLLNYVNATTISMSILGEPVGASI 253 Query: 268 LAFLLLGEQLT 278 LAF LLGE+L Sbjct: 254 LAFFLLGERLN 264 >B7I0E2.1 B7I0E2_BACC7 Putative membrane protein Length = 303 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 163/251 (64%), Gaps = 1/251 (0%) Query: 28 IVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAAFALRRKDWXXXXXXXX 87 I+AISF+A+F+K S+AP+S+ MYRL LLMLP ++ KDW Sbjct: 15 IIAISFAAVFVKMSSAPSSILSMYRLWIIVLLMLPIVWKKREEFSKIQIKDWGFLIGSGF 74 Query: 88 XXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXFGVV 147 HFLLW SLK+T+VASST+I+AL+P+ ++G + L+K+R+T GVV Sbjct: 75 FLALHFLLWFESLKHTTVASSTIILALQPIVSLVGGFFLFKERTTYSAIATMGIAILGVV 134 Query: 148 LIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVVFAI 207 IGWGD+GLS + GD+LS + V G+L IGQ V ++ ++YS VF A + I Sbjct: 135 CIGWGDLGLSEQAIYGDILSFLSVIAVVGYLFIGQTTVKKVSHWIYSFTVFAFAGIFMGI 194 Query: 208 YNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVGASI 267 YN++ +PF+ Y +W +F+LLAVVPTV H++ NWLL + +ATT+SM+ILGEPVGASI Sbjct: 195 YNIVLQVPFIGYTKWDWIVFLLLAVVPTV-SHVINNWLLNYVNATTISMSILGEPVGASI 253 Query: 268 LAFLLLGEQLT 278 LAF LLGE+L Sbjct: 254 LAFFLLGERLN 264 >B5VBI4.1 B5VBI4_BACCE Putative membrane protein Length = 303 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 163/251 (64%), Gaps = 1/251 (0%) Query: 28 IVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAAFALRRKDWXXXXXXXX 87 I+AISF+A+F+K S+AP+S+ MYRL LLMLP ++ KDW Sbjct: 15 IIAISFAAVFVKMSSAPSSILSMYRLWIIVLLMLPIVWKKREEFSKIQIKDWGFLIGSGF 74 Query: 88 XXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXFGVV 147 HFLLW SLK+T+VASST+I+AL+P+ ++G + L+K+R+T GVV Sbjct: 75 FLALHFLLWFESLKHTTVASSTIILALQPIVSLVGGFFLFKERTTYSAIATMGIAILGVV 134 Query: 148 LIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVVFAI 207 IGWGD+GLS + GD+LS + V G+L IGQ V ++ ++YS VF A + I Sbjct: 135 CIGWGDLGLSEQAIYGDILSFLSVIAVVGYLFIGQTTVKKVSHWIYSFTVFAFAGIFMGI 194 Query: 208 YNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVGASI 267 YN++ +PF+ Y +W +F+LLAVVPTV H++ NWLL + +ATT+SM+ILGEPVGASI Sbjct: 195 YNIVLQVPFIGYTKWDWIVFLLLAVVPTV-SHVINNWLLNYVNATTISMSILGEPVGASI 253 Query: 268 LAFLLLGEQLT 278 LAF LLGE+L Sbjct: 254 LAFFLLGERLN 264 >Q73BR8.1 Q73BR8_BACC1 Membrane protein, putative Length = 309 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 162/251 (64%), Gaps = 1/251 (0%) Query: 28 IVAISFSAIFIKWSAAPASVQGMYRLLFTSLLMLPFARPYSGAAFALRRKDWXXXXXXXX 87 I+AISF+A+F+K S+AP+S+ MYRL LLMLP ++ KDW Sbjct: 21 IIAISFAAVFVKMSSAPSSILSMYRLWIIVLLMLPIVWKKREEFSKIQIKDWGFLIGSGF 80 Query: 88 XXXXHFLLWMGSLKYTSVASSTMIMALEPVFIMLGAYILYKDRSTXXXXXXXXXXXFGVV 147 HFLLW SLK+T+VASST+I+AL+P+ ++G + L+K+R+T GVV Sbjct: 81 FLALHFLLWFESLKHTTVASSTIILALQPIVSLVGGFFLFKERTTYSAIATMGIAILGVV 140 Query: 148 LIGWGDIGLSSDNLKGDLLSVGGTVTVAGHLLIGQKLVARMPSYLYSLIVFITAAVVFAI 207 IGWGD+GLS + GD+LS + V G+L IGQ V ++ ++YS VF A + I Sbjct: 141 CIGWGDLGLSEQAIYGDILSFLSVIAVVGYLFIGQTTVKKVSHWIYSFTVFAFAGIFMGI 200 Query: 208 YNLLAGIPFLDYPPREWGIFVLLAVVPTVFGHILFNWLLQFTSATTVSMNILGEPVGASI 267 YN++ +PF Y +W +F+LLAVVPTV H++ NWLL + +ATT+SM+ILGEPVGASI Sbjct: 201 YNIVLQVPFTGYTKWDWTVFLLLAVVPTV-SHVINNWLLNYVNATTISMSILGEPVGASI 259 Query: 268 LAFLLLGEQLT 278 LAF LLGE+L Sbjct: 260 LAFFLLGERLN 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,348,811,643 Number of extensions: 47245045 Number of successful extensions: 166735 Number of sequences better than 1.0e-05: 417 Number of HSP's gapped: 166798 Number of HSP's successfully gapped: 418 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)