BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0048.p (160 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0EQQ6.1 C0EQQ6_NEIFL Putative uncharacterized protein 122 1e-26 C0DF58.1 C0DF58_NEIMU Putative uncharacterized protein 121 2e-26 C1HVP1.1 C1HVP1_NEIGO Putative uncharacterized protein 120 3e-26 B4RQ63.1 B4RQ63_NEIG2 Putative 6-pyruvoyl-tetrahydropterin synthase 120 3e-26 A9M1Z1.1 A9M1Z1_NEIM0 6-pyruvoyl tetrahydrobiopterin synthase, p... 118 1e-25 >C0EQQ6.1 C0EQQ6_NEIFL Putative uncharacterized protein Length = 140 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/138 (48%), Positives = 85/138 (61%), Gaps = 6/138 (4%) Query: 5 VSVCKIFTFDSAHQLVGHKGKCSNLHGHTYKLEVVLKGKPLAEEGHSDEGFVADFSDIKA 64 + + KIFTFDS+H L GH GKC NLHGHTYKLE+ + P+ + G D G V DF+D+KA Sbjct: 1 MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSA-PVIQGGAKD-GMVMDFTDLKA 58 Query: 65 TVQESLLDHLDHAFLAMGNE----PVLETLKNTGSKIALLSFRTTVENMSAYIAYKLIQA 120 V++ + D DHAF+ GN + L+ K L RTT ENMS I +L A Sbjct: 59 IVKQHITDPFDHAFIYHGNNERESQIAALLEGWNMKTLRLPCRTTAENMSVEIYGRLKNA 118 Query: 121 SLPLYSVKLWETPTSWAE 138 + + SVKLWETPTS AE Sbjct: 119 GVKVCSVKLWETPTSCAE 136 >C0DF58.1 C0DF58_NEIMU Putative uncharacterized protein Length = 140 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/138 (47%), Positives = 85/138 (61%), Gaps = 6/138 (4%) Query: 5 VSVCKIFTFDSAHQLVGHKGKCSNLHGHTYKLEVVLKGKPLAEEGHSDEGFVADFSDIKA 64 + + KIFTFDS+H L GH GKC NLHGHTYKLE+ + P+ G +G V DF+D+KA Sbjct: 1 MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDDPV--RGGPKDGMVMDFTDLKA 58 Query: 65 TVQESLLDHLDHAFLAM-GNE---PVLETLKNTGSKIALLSFRTTVENMSAYIAYKLIQA 120 V++ + D DHAF+ GNE + L+ K L RTT ENM+ + +L A Sbjct: 59 IVKQHITDPFDHAFIYNGGNERECQIATLLEGWNMKTLCLPCRTTAENMAVEMYDRLKNA 118 Query: 121 SLPLYSVKLWETPTSWAE 138 L + SVKLWETPTS AE Sbjct: 119 GLKVCSVKLWETPTSCAE 136 >C1HVP1.1 C1HVP1_NEIGO Putative uncharacterized protein Length = 140 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 6/138 (4%) Query: 5 VSVCKIFTFDSAHQLVGHKGKCSNLHGHTYKLEVVLKGKPLAEEGHSDEGFVADFSDIKA 64 + + KIFTFDS+H L GH GKC NLHGHTYKLE+ + + +G + +G V DF+D+KA Sbjct: 1 MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDGTI--KGGAKDGMVMDFTDLKA 58 Query: 65 TVQESLLDHLDHAFLAMGNE----PVLETLKNTGSKIALLSFRTTVENMSAYIAYKLIQA 120 V++ + DH DHAF+ G + L+ K L RTT ENM+ + +L A Sbjct: 59 IVKQHITDHFDHAFIYHGGNGRESQIAALLEGWNMKTLRLPCRTTAENMAVEMYCRLKNA 118 Query: 121 SLPLYSVKLWETPTSWAE 138 L + VKLWETPTS AE Sbjct: 119 GLNVCRVKLWETPTSCAE 136 >B4RQ63.1 B4RQ63_NEIG2 Putative 6-pyruvoyl-tetrahydropterin synthase Length = 144 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 6/138 (4%) Query: 5 VSVCKIFTFDSAHQLVGHKGKCSNLHGHTYKLEVVLKGKPLAEEGHSDEGFVADFSDIKA 64 + + KIFTFDS+H L GH GKC NLHGHTYKLE+ + + +G + +G V DF+D+KA Sbjct: 1 MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDGTI--KGGAKDGMVMDFTDLKA 58 Query: 65 TVQESLLDHLDHAFLAMGNE----PVLETLKNTGSKIALLSFRTTVENMSAYIAYKLIQA 120 V++ + DH DHAF+ G + L+ K L RTT ENM+ + +L A Sbjct: 59 IVKQHITDHFDHAFIYHGGNGRESQIAALLEGWNMKTLRLPCRTTAENMAVEMYCRLKNA 118 Query: 121 SLPLYSVKLWETPTSWAE 138 L + VKLWETPTS AE Sbjct: 119 GLNVCRVKLWETPTSCAE 136 >A9M1Z1.1 A9M1Z1_NEIM0 6-pyruvoyl tetrahydrobiopterin synthase, putative Length = 140 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 82/138 (59%), Gaps = 6/138 (4%) Query: 5 VSVCKIFTFDSAHQLVGHKGKCSNLHGHTYKLEVVLKGKPLAEEGHSDEGFVADFSDIKA 64 + + KIFTFDS+H L GH GKC NLHGHTYKLE+ + P+ G +G V DF+D+KA Sbjct: 1 MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDDPV--RGGPKDGMVMDFTDLKA 58 Query: 65 TVQESLLDHLDHAFLAMGNE----PVLETLKNTGSKIALLSFRTTVENMSAYIAYKLIQA 120 V++ + D DHAF+ G + L+ K L RTT ENM+ + +L A Sbjct: 59 IVKQHITDPFDHAFIYHGGNGRESQIAALLEGWNMKTLRLPCRTTAENMAVEMYDRLKNA 118 Query: 121 SLPLYSVKLWETPTSWAE 138 L + VKLWETPTS AE Sbjct: 119 GLNVCRVKLWETPTSCAE 136 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 971,408,352 Number of extensions: 35274329 Number of successful extensions: 92896 Number of sequences better than 1.0e-05: 502 Number of HSP's gapped: 92761 Number of HSP's successfully gapped: 502 Length of query: 160 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 39 Effective length of database: 1,920,753,388 Effective search space: 74909382132 Effective search space used: 74909382132 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)