BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0047.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BE12.1 C3BE12_BACMY Putative uncharacterized protein 325 2e-87 C3AVK2.1 C3AVK2_BACMY Putative uncharacterized protein 325 2e-87 C4IIS3.1 C4IIS3_CLOBU ExsB protein 325 2e-87 B1QSY8.1 B1QSY8_CLOBU ExsB protein 325 2e-87 C2XR71.1 C2XR71_BACCE Putative uncharacterized protein 325 3e-87 >C3BE12.1 C3BE12_BACMY Putative uncharacterized protein Length = 221 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 155/217 (71%), Positives = 176/217 (81%), Gaps = 1/217 (0%) Query: 1 MTMNNKALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXFNVKQ 60 M N+KA+VVFSGGQDSTTCL WA++ + EV+AVTFNYNQRH +K Sbjct: 1 MYSNDKAIVVFSGGQDSTTCLFWAMQQFAEVEAVTFNYNQRHKLEIDCAAEIANELGIKH 60 Query: 61 HILDLGLLHQLAPNALTRDDIEIAAGEGEELPSTFVDGRNLLFLSFAAILAKQLEFTNIV 120 +LD+ LL+QLAPNALTR D+EI EGE LPSTFVDGRNLLFLSFAA+LAKQ+ +IV Sbjct: 61 TVLDMSLLNQLAPNALTRTDMEITHEEGE-LPSTFVDGRNLLFLSFAAVLAKQVGAHHIV 119 Query: 121 TGVCQTDFSGYPDCRDVFVKSLNVTLNLSMDYEFVIHTPLMWLDKKETWKLADELGCFEY 180 TGVC+TDFSGYPDCRDVFVKSLNVTLNLSMDY FVIHTPLMW+DK ETWK+ADELG FE+ Sbjct: 120 TGVCETDFSGYPDCRDVFVKSLNVTLNLSMDYPFVIHTPLMWIDKAETWKIADELGAFEF 179 Query: 181 IREHTLTCYNGIIGSGCGTCPACLLRQRGLDQYEAER 217 +RE TLTCYNGIIG+GCG CPAC LR+ GLD Y ER Sbjct: 180 VREKTLTCYNGIIGNGCGECPACQLRKAGLDTYLQER 216 >C3AVK2.1 C3AVK2_BACMY Putative uncharacterized protein Length = 221 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 155/217 (71%), Positives = 176/217 (81%), Gaps = 1/217 (0%) Query: 1 MTMNNKALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXFNVKQ 60 M N+KA+VVFSGGQDSTTCL WA++ + EV+AVTFNYNQRH +K Sbjct: 1 MYSNDKAIVVFSGGQDSTTCLFWAMQQFAEVEAVTFNYNQRHKLEIDCAAEIANELGIKH 60 Query: 61 HILDLGLLHQLAPNALTRDDIEIAAGEGEELPSTFVDGRNLLFLSFAAILAKQLEFTNIV 120 +LD+ LL+QLAPNALTR D+EI EGE LPSTFVDGRNLLFLSFAA+LAKQ+ +IV Sbjct: 61 TVLDMSLLNQLAPNALTRTDMEITHEEGE-LPSTFVDGRNLLFLSFAAVLAKQVGAHHIV 119 Query: 121 TGVCQTDFSGYPDCRDVFVKSLNVTLNLSMDYEFVIHTPLMWLDKKETWKLADELGCFEY 180 TGVC+TDFSGYPDCRDVFVKSLNVTLNLSMDY FVIHTPLMW+DK ETWK+ADELG FE+ Sbjct: 120 TGVCETDFSGYPDCRDVFVKSLNVTLNLSMDYPFVIHTPLMWIDKAETWKIADELGAFEF 179 Query: 181 IREHTLTCYNGIIGSGCGTCPACLLRQRGLDQYEAER 217 +RE TLTCYNGIIG+GCG CPAC LR+ GLD Y ER Sbjct: 180 VREKTLTCYNGIIGNGCGECPACQLRKAGLDTYLQER 216 >C4IIS3.1 C4IIS3_CLOBU ExsB protein Length = 218 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 149/211 (70%), Positives = 172/211 (81%) Query: 3 MNNKALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXFNVKQHI 62 MN KA+VVFSGGQDSTTCL WAL+ ++EV AVTFNYNQ+H V+ HI Sbjct: 1 MNKKAVVVFSGGQDSTTCLFWALEQFDEVIAVTFNYNQKHKLEIECAKSIAKELGVEHHI 60 Query: 63 LDLGLLHQLAPNALTRDDIEIAAGEGEELPSTFVDGRNLLFLSFAAILAKQLEFTNIVTG 122 LD+GLL+QLAPNALTRDDIEI GE E PSTFV+GRN+LFL+FA +LAK +IVTG Sbjct: 61 LDMGLLNQLAPNALTRDDIEIKMGENGEPPSTFVEGRNMLFLTFAGVLAKVKGAKHIVTG 120 Query: 123 VCQTDFSGYPDCRDVFVKSLNVTLNLSMDYEFVIHTPLMWLDKKETWKLADELGCFEYIR 182 VC+TDFSGYPDCRDVFVKSLNVT+NL+MDYEFV+HTPLMW+DK ETWK+AD+ G EY+R Sbjct: 121 VCETDFSGYPDCRDVFVKSLNVTMNLAMDYEFVVHTPLMWIDKAETWKMADDFGKLEYVR 180 Query: 183 EHTLTCYNGIIGSGCGTCPACLLRQRGLDQY 213 E TLTCYNGIIG GCG CPAC+LR+RGLD Y Sbjct: 181 EKTLTCYNGIIGDGCGKCPACILRKRGLDNY 211 >B1QSY8.1 B1QSY8_CLOBU ExsB protein Length = 218 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 149/211 (70%), Positives = 172/211 (81%) Query: 3 MNNKALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXFNVKQHI 62 MN KA+VVFSGGQDSTTCL WAL+ ++EV AVTFNYNQ+H V+ HI Sbjct: 1 MNKKAVVVFSGGQDSTTCLFWALEQFDEVIAVTFNYNQKHKLEIECAKSIAKELGVEHHI 60 Query: 63 LDLGLLHQLAPNALTRDDIEIAAGEGEELPSTFVDGRNLLFLSFAAILAKQLEFTNIVTG 122 LD+GLL+QLAPNALTRDDIEI GE E PSTFV+GRN+LFL+FA +LAK +IVTG Sbjct: 61 LDMGLLNQLAPNALTRDDIEIKMGENGEPPSTFVEGRNMLFLTFAGVLAKVKGAKHIVTG 120 Query: 123 VCQTDFSGYPDCRDVFVKSLNVTLNLSMDYEFVIHTPLMWLDKKETWKLADELGCFEYIR 182 VC+TDFSGYPDCRDVFVKSLNVT+NL+MDYEFV+HTPLMW+DK ETWK+AD+ G EY+R Sbjct: 121 VCETDFSGYPDCRDVFVKSLNVTMNLAMDYEFVVHTPLMWIDKAETWKMADDFGKLEYVR 180 Query: 183 EHTLTCYNGIIGSGCGTCPACLLRQRGLDQY 213 E TLTCYNGIIG GCG CPAC+LR+RGLD Y Sbjct: 181 EKTLTCYNGIIGDGCGKCPACILRKRGLDNY 211 >C2XR71.1 C2XR71_BACCE Putative uncharacterized protein Length = 223 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 155/214 (72%), Positives = 173/214 (80%), Gaps = 1/214 (0%) Query: 4 NNKALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXFNVKQHIL 63 KA+VVFSGGQDSTTCL WA++ +EEV+AVTFNYNQRH +K IL Sbjct: 6 KEKAVVVFSGGQDSTTCLFWAIQQFEEVEAVTFNYNQRHKLEIDCAAEIAKELGIKHTIL 65 Query: 64 DLGLLHQLAPNALTRDDIEIAAGEGEELPSTFVDGRNLLFLSFAAILAKQLEFTNIVTGV 123 D+ LL+QLAPNALTR D+EI EGE LPSTFVDGRNLLFLSFAA+LAKQ+ +IVTGV Sbjct: 66 DMSLLNQLAPNALTRTDMEITHEEGE-LPSTFVDGRNLLFLSFAAVLAKQVGARHIVTGV 124 Query: 124 CQTDFSGYPDCRDVFVKSLNVTLNLSMDYEFVIHTPLMWLDKKETWKLADELGCFEYIRE 183 C+TDFSGYPDCRDVFVKSLNVTLNLSMDY FVIHTPLMW+DK ETWKL+DELG FE++RE Sbjct: 125 CETDFSGYPDCRDVFVKSLNVTLNLSMDYPFVIHTPLMWIDKAETWKLSDELGAFEFVRE 184 Query: 184 HTLTCYNGIIGSGCGTCPACLLRQRGLDQYEAER 217 TLTCYNGIIG GCG CPAC LR+ GLD Y ER Sbjct: 185 KTLTCYNGIIGDGCGECPACQLRKAGLDTYLQER 218 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,304,918,926 Number of extensions: 49760493 Number of successful extensions: 93469 Number of sequences better than 1.0e-05: 1032 Number of HSP's gapped: 91651 Number of HSP's successfully gapped: 1039 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)