BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0045.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O31786.3 YMZB_BACSU Uncharacterized protein ymzB                       60   5e-08
B3KDP4.1 B3KDP4_9BACI Putative uncharacterized protein                 60   8e-08
A7Z4Z3.1 A7Z4Z3_BACA2 YmzB                                             59   2e-07

>O31786.3 YMZB_BACSU Uncharacterized protein ymzB
          Length = 118

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 7   KLMDWLTAQAGETIMIKK------QEMNDLDTVHFNLETVDYRNTEDVIDEYLDSALILR 60
           +L  WL ++ G+T+ I+K      +E++DLD +  +L+ V  R+T    D      L+L 
Sbjct: 7   QLSQWLESKVGQTLDIRKGELTHDEEISDLDQIVLHLQKVAIRSTNHPDDYVAKEELVLE 66

Query: 61  GTGNTLNRDGELVPLPQQNYEIAVSG-LQLDNADDGQVELRTERAKYSI 108
           G G T   DG  VPLPQ  YEI + G L +   ++G +++ T+RA Y+I
Sbjct: 67  GEGTTFTEDGN-VPLPQNAYEIPLLGELHIHQENEG-LKVVTDRAVYTI 113


>B3KDP4.1 B3KDP4_9BACI Putative uncharacterized protein
          Length = 113

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 1   MDQNVLKLMDWLTAQAGETIMIKKQEMNDLDTVHFNLETVDYRNTE-DVIDEYLD-SALI 58
           M+ ++ ++ +WL + +  T+ I KQE  D D V   LE  +++  +   ID Y D  AL+
Sbjct: 2   MNPSIEEVTNWLQSNSNRTLHISKQEEKDQDQVELRLERFEHQQQQAQSIDGYGDRHALL 61

Query: 59  LRGTGNTLNRDGELVPLPQQNYEIAVSGLQLDNADDGQVELRTERAKYSIS 109
           L G G  +   G   PLP   + I + GL      D QV L TER  YSI+
Sbjct: 62  LHGPGVVITA-GHEAPLPSNAFVIGLDGLTAAEIQDRQVVLTTERGIYSIT 111


>A7Z4Z3.1 A7Z4Z3_BACA2 YmzB
          Length = 120

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 10/111 (9%)

Query: 7   KLMDWLTAQAGETIMIKK-------QEMNDLDTVHFNLETVDYRNTEDVIDEYLDSALIL 59
           +L +WL  Q G+T+ I+K        E++D+D +  +L+ V  R T    D   D  L+L
Sbjct: 7   ELSEWLQKQIGQTLDIRKGELTDSRNEISDMDQIMLHLDDVLVRRTNHPDDYVADEELVL 66

Query: 60  RGTGNTLNRDGELVPLPQQNYEIAVSG-LQLDNADDGQVELRTERAKYSIS 109
           +G G T   +G  VPLPQ  YEI + G + +    DG +++ T+RA Y+I 
Sbjct: 67  KGHGTTYTEEGN-VPLPQDAYEIPLLGDITIQKEQDG-LKVHTDRAVYTIG 115


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 647,043,595
Number of extensions: 25136920
Number of successful extensions: 50834
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 50830
Number of HSP's successfully gapped: 4
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)