BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0043.p
         (73 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D5K1.1 B1D5K1_9BACL ABC transporter related                         122   2e-26
C0Z8P7.1 C0Z8P7_BREBN Probable ABC transporter ATP binding protein    112   9e-24
Q4EQH8.1 Q4EQH8_LISMO Iron compound ABC transporter, ATP-binding...   105   1e-21
Q4EH33.1 Q4EH33_LISMO Iron compound ABC transporter, ATP-binding...   105   2e-21
B8DBW6.1 B8DBW6_LISMH Ferric enterobactin transport ATP-binding ...   104   2e-21

>B1D5K1.1 B1D5K1_9BACL ABC transporter related
          Length = 283

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 60/70 (85%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHASRYA HMVAIK G+V+ EG P+EVMT  +LREVF IEADIVPDPRTGVPLC
Sbjct: 195 MVVHDLNHASRYAHHMVAIKKGTVVGEGTPAEVMTPDILREVFNIEADIVPDPRTGVPLC 254

Query: 61  LPYELAAYSA 70
           LPY LA  SA
Sbjct: 255 LPYALAGESA 264


>C0Z8P7.1 C0Z8P7_BREBN Probable ABC transporter ATP binding protein
          Length = 287

 Score =  112 bits (281), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 59/65 (90%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHA+RYAQHMVAI  G+V++EG+P+EVMT  +LR+VF IEADI+ DPRTGVPLC
Sbjct: 195 MVVHDLNHATRYAQHMVAISRGTVVAEGSPAEVMTPEMLRKVFNIEADILTDPRTGVPLC 254

Query: 61  LPYEL 65
           LPYEL
Sbjct: 255 LPYEL 259


>Q4EQH8.1 Q4EQH8_LISMO Iron compound ABC transporter, ATP-binding protein
          Length = 183

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 53/64 (82%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHASRYA HM+AIK G VI+EG P+ VMT   L +VF I+ADI+ DPR+GVPLC
Sbjct: 104 MVVHDLNHASRYAHHMIAIKEGKVIAEGTPTSVMTEQTLEDVFNIKADILIDPRSGVPLC 163

Query: 61  LPYE 64
           LPYE
Sbjct: 164 LPYE 167


>Q4EH33.1 Q4EH33_LISMO Iron compound ABC transporter, ATP-binding protein
          Length = 193

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 53/64 (82%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHASRYA HM+AIK G VI+EG P+ VMT   L +VF I+ADI+ DPR+GVPLC
Sbjct: 114 MVVHDLNHASRYAHHMIAIKEGKVIAEGTPTNVMTEQTLEDVFNIKADILIDPRSGVPLC 173

Query: 61  LPYE 64
           LPYE
Sbjct: 174 LPYE 177


>B8DBW6.1 B8DBW6_LISMH Ferric enterobactin transport ATP-binding protein FepC
          Length = 274

 Score =  104 bits (260), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/64 (71%), Positives = 53/64 (82%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHASRYA HM+AIK G VI+EG P+ VMT   L +VF I+ADI+ DPR+GVPLC
Sbjct: 195 MVVHDLNHASRYAHHMIAIKEGKVIAEGTPTSVMTEQTLEDVFNIKADILIDPRSGVPLC 254

Query: 61  LPYE 64
           LPYE
Sbjct: 255 LPYE 258


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 430,002,575
Number of extensions: 14353522
Number of successful extensions: 53896
Number of sequences better than 1.0e-05: 1223
Number of HSP's gapped: 53930
Number of HSP's successfully gapped: 1225
Length of query: 73
Length of database: 3,060,696,203
Length adjustment: 44
Effective length of query: 29
Effective length of database: 2,646,171,543
Effective search space: 76738974747
Effective search space used: 76738974747
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)