BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0042.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8P7.1 C0Z8P7_BREBN Probable ABC transporter ATP binding protein 227 6e-58 B1D5K1.1 B1D5K1_9BACL ABC transporter related 209 1e-52 B8DBW6.1 B8DBW6_LISMH Ferric enterobactin transport ATP-binding ... 191 2e-47 A0AK72.1 A0AK72_LISW6 FhuC protein 190 6e-47 Q92A48.1 Q92A48_LISIN FhuC protein 187 3e-46 >C0Z8P7.1 C0Z8P7_BREBN Probable ABC transporter ATP binding protein Length = 287 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 109/142 (76%), Positives = 123/142 (86%) Query: 6 ERLNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVM 65 ERL T++L IGY E IVK LN+S+P+GKITALVGANGSGKSTILKT+ARIMKP G V Sbjct: 2 ERLYTQKLDIGYGELSIVKDLNISIPSGKITALVGANGSGKSTILKTLARIMKPTGGQVF 61 Query: 66 LDGKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIA 125 LDGKSIH STKEVA+QLAILPQNPTAPDGLTVSELV YGR+PHQKGFG+LT ED+ II Sbjct: 62 LDGKSIHQQSTKEVAKQLAILPQNPTAPDGLTVSELVTYGRFPHQKGFGSLTKEDKEIIN 121 Query: 126 NAITVTGMEAFHDRPIDRLSGG 147 AI++TGM FHDRP+D+LSGG Sbjct: 122 WAISMTGMADFHDRPVDQLSGG 143 >B1D5K1.1 B1D5K1_9BACL ABC transporter related Length = 283 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 100/141 (70%), Positives = 117/141 (82%) Query: 7 RLNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVML 66 RL T L I Y + +IV+ LN+++P GKITALVG+NGSGKSTILKTMAR+M P GSV+L Sbjct: 3 RLATSNLDIAYDDRLIVQNLNIAIPQGKITALVGSNGSGKSTILKTMARLMHPSGGSVLL 62 Query: 67 DGKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIAN 126 DG+SIH STKEVA+QLAILPQNPTAPDGLTV+ELV YGR+P+QKGFG+LT EDR II Sbjct: 63 DGRSIHKQSTKEVAKQLAILPQNPTAPDGLTVAELVSYGRFPYQKGFGSLTKEDRGIIQW 122 Query: 127 AITVTGMEAFHDRPIDRLSGG 147 AI TGM F DRP+D+LSGG Sbjct: 123 AIDATGMAEFTDRPVDQLSGG 143 >B8DBW6.1 B8DBW6_LISMH Ferric enterobactin transport ATP-binding protein FepC Length = 274 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/140 (64%), Positives = 112/140 (80%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 L+T+ L I Y + +IV GL++++P KITALVGANGSGKSTILKTM+R+MKP G+V LD Sbjct: 4 LHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLD 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GKSIHN ST+E+A+QLAILPQNP+APDGLTV EL+ YGR PHQ F ++T +DR II + Sbjct: 64 GKSIHNESTREIAKQLAILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWS 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + VT + F DRPID LSGG Sbjct: 124 LRVTNLTEFADRPIDSLSGG 143 >A0AK72.1 A0AK72_LISW6 FhuC protein Length = 274 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 90/140 (64%), Positives = 111/140 (79%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 L+TE L I Y + +IV GL++++P KITALVGANGSGKSTILKTM+R+MKP G+V LD Sbjct: 4 LHTENLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLD 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK+IHN T+EVA+QLAILPQNP+APDGLTV EL+ YGR PHQ F ++T +DR II + Sbjct: 64 GKTIHNEPTREVAKQLAILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWS 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + VT + F DRPID LSGG Sbjct: 124 LRVTNLTEFADRPIDSLSGG 143 >Q92A48.1 Q92A48_LISIN FhuC protein Length = 274 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 88/140 (62%), Positives = 110/140 (78%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 L+T+ L I Y + +IV GL++++P KITALVGANGSGKSTILKTM+R+MKP G+V LD Sbjct: 4 LHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLD 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK IHN T+E+A+QLAILPQNP+APDGLTV EL+ YGR PHQ F ++T +DR II + Sbjct: 64 GKKIHNEPTREIAKQLAILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWS 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + VT + F DRPID LSGG Sbjct: 124 LRVTNLTEFADRPIDSLSGG 143 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,239,348,874 Number of extensions: 51005314 Number of successful extensions: 284246 Number of sequences better than 1.0e-05: 19780 Number of HSP's gapped: 287949 Number of HSP's successfully gapped: 20217 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)