BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0041.p (344 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJ93.1 C0ZJ93_BREBN Probable ABC transporter permease protein 388 e-106 B1I066.1 B1I066_LYSSC Putative uncharacterized protein 367 e-99 A3IES4.1 A3IES4_9BACI Putative uncharacterized protein 365 3e-99 B1D643.1 B1D643_9BACL Transport system permease protein 355 3e-96 B1DAH0.1 B1DAH0_9BACL Transport system permease protein 343 1e-92 >C0ZJ93.1 C0ZJ93_BREBN Probable ABC transporter permease protein Length = 343 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/342 (55%), Positives = 242/342 (70%) Query: 3 RSQLSSTPKKRRTRENXXXXXXXXXXXXMFIISMNTGLIRLSPTEVIHTLLGEGSQQQKL 62 + +S ++R R FIISMNTG IRLSP++++ TL+G G+ +Q L Sbjct: 2 QQMVSHYQTRKRNRAFAVMTILAILIFIAFIISMNTGYIRLSPSDLLMTLIGSGTDKQSL 61 Query: 63 ILFDFRLPRIVISLLVGAGFAVAGCILQSLSRNALAEPSTLGINAGAGFAVLIFISFVPA 122 ILF+FRLPRIVISLL+GAG AV+GCI+Q +SRNALAEP LGINAGAG V++FISF P+ Sbjct: 62 ILFEFRLPRIVISLLIGAGLAVSGCIIQGISRNALAEPGILGINAGAGLMVMLFISFYPS 121 Query: 123 TTAAPIFXXXXXXXXXXXXXXXXIYVLAYRREDGLSPTRLILXXXXXXXXXXXFQLILSL 182 T+AAP+F I+VL+Y+R GLSPTR+IL ++L+L Sbjct: 122 TSAAPVFLLPVLALLGASVTAALIFVLSYKRHKGLSPTRIILTGIAVAAGMSAAMIVLTL 181 Query: 183 RLDPENYQFVATWLAGKIWGGDWRFVMALLPWILILVPFAFYKARVLNVLNLGDEIPAGL 242 +L P+ YQFVATWLAG IWG +W+FV++LLPWI+IL+P+ FYKARV+NVLNLG+E+ GL Sbjct: 182 KLSPDKYQFVATWLAGSIWGTNWKFVLSLLPWIVILIPYVFYKARVMNVLNLGEELAKGL 241 Query: 243 GLPVERERXXXXXXXXXXXXXXXXXXXXIGFVGLIAPHLARRIVGPRHQILLPACALVGA 302 G PV +E+ IGFVGLI PHLARR+VGP+H++LLP AL GA Sbjct: 242 GAPVAKEQLKLLAAAVGLAASCVAVSGGIGFVGLIGPHLARRLVGPKHEMLLPTSALAGA 301 Query: 303 LLLLTADTMARWILQPSEIPTGIVVAIIGAPYFLYLLARSKA 344 LL++ ADT+ RWI+QPSEIPTGIVVA+IGAPYFLYLLARSKA Sbjct: 302 LLVIVADTIGRWIMQPSEIPTGIVVAVIGAPYFLYLLARSKA 343 >B1I066.1 B1I066_LYSSC Putative uncharacterized protein Length = 344 Score = 367 bits (942), Expect = e-99, Method: Compositional matrix adjust. Identities = 183/343 (53%), Positives = 233/343 (67%) Query: 1 MSRSQLSSTPKKRRTRENXXXXXXXXXXXXMFIISMNTGLIRLSPTEVIHTLLGEGSQQQ 60 MS S L+ + +K R + F+ISMNTG+I+L+P EV TL G+G QQ Sbjct: 1 MSNSYLTPSQQKTRKKNFIIIATLLVLIFVTFVISMNTGVIKLTPLEVFKTLFGQGDAQQ 60 Query: 61 KLILFDFRLPRIVISLLVGAGFAVAGCILQSLSRNALAEPSTLGINAGAGFAVLIFISFV 120 +LILF+FRLPRIVI++LVG G A++G ILQ +S+NALA+P LGINAGAG AV+++ISF Sbjct: 61 QLILFEFRLPRIVIAVLVGMGLAISGAILQGVSKNALADPGILGINAGAGLAVMLYISFF 120 Query: 121 PATTAAPIFXXXXXXXXXXXXXXXXIYVLAYRREDGLSPTRLILXXXXXXXXXXXFQLIL 180 P T AAP++ IY L+Y+R +G++P RLIL ++L Sbjct: 121 PTTKAAPVYLLPVLAFVGAGLTAVLIYSLSYKRHEGITPMRLILTGVAIAAGISSAMIVL 180 Query: 181 SLRLDPENYQFVATWLAGKIWGGDWRFVMALLPWILILVPFAFYKARVLNVLNLGDEIPA 240 +LRL PENYQFVATWLAG IWG +WRFV++LLPW++IL+PF + K+RVLN+LNLG+ Sbjct: 181 TLRLSPENYQFVATWLAGSIWGSNWRFVLSLLPWLVILLPFVYAKSRVLNILNLGELTAV 240 Query: 241 GLGLPVERERXXXXXXXXXXXXXXXXXXXXIGFVGLIAPHLARRIVGPRHQILLPACALV 300 GLG +ERER IGFVGLIAPHLAR++VG +HQ LLPA AL+ Sbjct: 241 GLGASIERERRWLLAAAVGLAGASVSVSGGIGFVGLIAPHLARQLVGAKHQFLLPAAALL 300 Query: 301 GALLLLTADTMARWILQPSEIPTGIVVAIIGAPYFLYLLARSK 343 G L+L ADT+ R IL+PSEIP GIVVA+IGAPYFLYLLAR K Sbjct: 301 GGFLVLMADTIGRSILEPSEIPAGIVVAVIGAPYFLYLLARLK 343 >A3IES4.1 A3IES4_9BACI Putative uncharacterized protein Length = 344 Score = 365 bits (937), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 181/343 (52%), Positives = 233/343 (67%) Query: 1 MSRSQLSSTPKKRRTRENXXXXXXXXXXXXMFIISMNTGLIRLSPTEVIHTLLGEGSQQQ 60 MS S L+ + +K + + F+ISMNTG+I+L+P EV TL G+G QQ Sbjct: 1 MSNSYLTPSQQKTKKKNFIIIATLLVLIFITFVISMNTGVIKLTPMEVFKTLFGQGDAQQ 60 Query: 61 KLILFDFRLPRIVISLLVGAGFAVAGCILQSLSRNALAEPSTLGINAGAGFAVLIFISFV 120 +LILF+FRLPRIVI++LVG G A++G ILQ +S+NALA+P LGINAGAG AV+++ISF Sbjct: 61 QLILFEFRLPRIVIAILVGMGLAISGAILQGVSKNALADPGILGINAGAGLAVMLYISFF 120 Query: 121 PATTAAPIFXXXXXXXXXXXXXXXXIYVLAYRREDGLSPTRLILXXXXXXXXXXXFQLIL 180 P T AAP++ IY L+Y+R +G++P RLIL ++L Sbjct: 121 PTTKAAPVYLLPVLAFIGAGLTAILIYSLSYKRHEGITPMRLILTGVAVAAGISSAMIVL 180 Query: 181 SLRLDPENYQFVATWLAGKIWGGDWRFVMALLPWILILVPFAFYKARVLNVLNLGDEIPA 240 +LRL PENYQFVATWLAG IWG +WRFV++LLPW++IL+PF + K+RVLN+LNLG+ Sbjct: 181 TLRLSPENYQFVATWLAGSIWGSNWRFVLSLLPWLVILLPFVYAKSRVLNILNLGELTAV 240 Query: 241 GLGLPVERERXXXXXXXXXXXXXXXXXXXXIGFVGLIAPHLARRIVGPRHQILLPACALV 300 GLG +E+ER IGFVGLIAPHLAR++VG +HQ LLPA AL+ Sbjct: 241 GLGASIEKERRWLLAAAVGLAGASVSVSGGIGFVGLIAPHLARQLVGAKHQFLLPAAALL 300 Query: 301 GALLLLTADTMARWILQPSEIPTGIVVAIIGAPYFLYLLARSK 343 G L+L ADT+ R IL+PSEIP GIVVA+IGAPYFLYLLAR K Sbjct: 301 GGFLVLMADTIGRSILEPSEIPAGIVVAVIGAPYFLYLLARLK 343 >B1D643.1 B1D643_9BACL Transport system permease protein Length = 346 Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 174/344 (50%), Positives = 229/344 (66%) Query: 1 MSRSQLSSTPKKRRTRENXXXXXXXXXXXXMFIISMNTGLIRLSPTEVIHTLLGEGSQQQ 60 M ++S+ +RR R FI+SMNTG RLSP +++HTLLG+G+ Q Sbjct: 3 MITGAITSSEIRRRRRNTIMLAVLAIVIVLAFILSMNTGHSRLSPLDLLHTLLGDGTPQM 62 Query: 61 KLILFDFRLPRIVISLLVGAGFAVAGCILQSLSRNALAEPSTLGINAGAGFAVLIFISFV 120 LILF+FRLPRIVI++L+GAG AV+GCI+Q +SRNALA+P GINAGAG VLIF++F Sbjct: 63 DLILFEFRLPRIVIAILIGAGLAVSGCIMQGISRNALADPGIFGINAGAGLFVLIFVAFF 122 Query: 121 PATTAAPIFXXXXXXXXXXXXXXXXIYVLAYRREDGLSPTRLILXXXXXXXXXXXFQLIL 180 P+TT AP+F +++L+Y R G SPT+L+L ++L Sbjct: 123 PSTTDAPVFLLPVLAWIGAGLTAALVFLLSYNRHKGFSPTQLLLSGVGVAAGISAATIVL 182 Query: 181 SLRLDPENYQFVATWLAGKIWGGDWRFVMALLPWILILVPFAFYKARVLNVLNLGDEIPA 240 +LR+ PE +QFVATW+AG IWG +W +V+ALLP+I +L+P AF KAR ++ L+LG+ Sbjct: 183 TLRISPEKFQFVATWMAGSIWGTNWSYVLALLPFIAVLLPLAFLKARTMDALHLGESTAR 242 Query: 241 GLGLPVERERXXXXXXXXXXXXXXXXXXXXIGFVGLIAPHLARRIVGPRHQILLPACALV 300 GLG+ V +E+ IGFVGLI PHLAR +VGPRHQ LLPA AL+ Sbjct: 243 GLGVKVSKEQLVLLAAAVGLAGSCVAVSGGIGFVGLIGPHLARSLVGPRHQALLPASALI 302 Query: 301 GALLLLTADTMARWILQPSEIPTGIVVAIIGAPYFLYLLARSKA 344 G+LL++ AD + RW+LQPSEIP GI+V IIGAPYFLYLLARSKA Sbjct: 303 GSLLVVVADMLGRWLLQPSEIPAGIIVGIIGAPYFLYLLARSKA 346 >B1DAH0.1 B1DAH0_9BACL Transport system permease protein Length = 344 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 165/344 (47%), Positives = 229/344 (66%) Query: 1 MSRSQLSSTPKKRRTRENXXXXXXXXXXXXMFIISMNTGLIRLSPTEVIHTLLGEGSQQQ 60 M + +S T +R+ R F+ISMNTG+IR+SP +V+ TL G G+ QQ Sbjct: 1 MKGTMISLTEVRRKRRNTLVISVMLIGILAAFLISMNTGVIRMSPLDVVKTLFGFGTAQQ 60 Query: 61 KLILFDFRLPRIVISLLVGAGFAVAGCILQSLSRNALAEPSTLGINAGAGFAVLIFISFV 120 L+LFDFRLPRI+IS+L+G G AV+G +LQ+L+RNALA+P +GIN+GAG +L++++F Sbjct: 61 HLVLFDFRLPRIIISILIGMGLAVSGAVLQALTRNALADPGIIGINSGAGMVILLYVAFY 120 Query: 121 PATTAAPIFXXXXXXXXXXXXXXXXIYVLAYRREDGLSPTRLILXXXXXXXXXXXFQLIL 180 + T+AP + +++++YR+ GLS RL+L +++ Sbjct: 121 SSPTSAPAYLLPILAWLGGGVAALLVFIISYRKHKGLSSNRLVLNGVAISSGFSAVTILV 180 Query: 181 SLRLDPENYQFVATWLAGKIWGGDWRFVMALLPWILILVPFAFYKARVLNVLNLGDEIPA 240 SLR++PE YQFV+TW+AG IW DW +V ALLP+I++L+PF ++K++ +NVLNLG + Sbjct: 181 SLRINPEQYQFVSTWIAGSIWSKDWSYVTALLPFIVVLLPFVYFKSQTINVLNLGAPLAT 240 Query: 241 GLGLPVERERXXXXXXXXXXXXXXXXXXXXIGFVGLIAPHLARRIVGPRHQILLPACALV 300 GLG V +++ IGFVGLIAPHLARR+VG R+QILLPA AL Sbjct: 241 GLGAAVAKQQIWLLAAAVGLASSCVAVSGSIGFVGLIAPHLARRLVGQRYQILLPATALA 300 Query: 301 GALLLLTADTMARWILQPSEIPTGIVVAIIGAPYFLYLLARSKA 344 G LL+L ADT+ RWILQPSEIPTGIVVA+IGAPYFLYL+ R+K Sbjct: 301 GGLLVLVADTLGRWILQPSEIPTGIVVAVIGAPYFLYLMFRTKG 344 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,634,952,817 Number of extensions: 57818658 Number of successful extensions: 189723 Number of sequences better than 1.0e-05: 5193 Number of HSP's gapped: 179366 Number of HSP's successfully gapped: 6043 Length of query: 344 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 208 Effective length of database: 1,779,438,163 Effective search space: 370123137904 Effective search space used: 370123137904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)