BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0040.p (352 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJ94.1 C0ZJ94_BREBN Probable ABC transporter permease protein 377 e-103 B3KCE5.1 B3KCE5_9BACI Transport system permease protein 354 9e-96 B1I065.1 B1I065_LYSSC Iron compound ABC transporter, permease pr... 347 1e-93 A3IES5.1 A3IES5_9BACI Iron compound ABC transporter, permease pr... 345 3e-93 B1D644.1 B1D644_9BACL Transport system permease protein 341 8e-92 >C0ZJ94.1 C0ZJ94_BREBN Probable ABC transporter permease protein Length = 351 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/348 (55%), Positives = 239/348 (68%) Query: 1 MVTSTHSQPRTHPEGEKQLKTRPXXXXXXXXXXXXXXXXXXXXSVSVGAADIRLASVWEA 60 M HS + ++RP SVS GAADI A VWEA Sbjct: 1 MSQHAHSLNEGNNGKPVAFRSRPWAATLILTGGVFALILGMFLSVSFGAADIHFAVVWEA 60 Query: 61 VFRFNPELPQHQVIRELRIPRALAGALVGACFAVAGAIMQGMTRNPLADSGLLGLNAGAS 120 +F+FNP + QHQ+I+E+R+PR L GA+VGA AVAGAIMQGMTRNPLADSGLLGLNAGA Sbjct: 61 IFQFNPAITQHQIIQEIRLPRLLGGAMVGASLAVAGAIMQGMTRNPLADSGLLGLNAGAG 120 Query: 121 VGLALAFAFAPSMSFIYIMLYCFIGAAAASLLVFGIGSLSHSGLTPLRXXXXXXXXXXXX 180 LAL FAF P + F+Y++LY F+GA + +V+GIGSL+ GLTP+R Sbjct: 121 FVLALCFAFFPGLPFMYLILYSFLGAGVGAGMVYGIGSLAKGGLTPVRLVLAGAALTALL 180 Query: 181 XXISQGIAILFHLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAALIGSLMISRSITLLSLG 240 +S+GIA+ F + QD+AFW AGG+ GT W QL +MFPW+ AALIG++M+SRSIT+LSLG Sbjct: 181 SALSEGIALYFKIGQDLAFWYAGGVAGTKWFQLEVMFPWIVAALIGAMMLSRSITMLSLG 240 Query: 241 RDVAAGLGQRTRLVQTXXXXXXXXXXXXXXXXXXPIAFIGLIIPHVTRFLVGVDYRWIIP 300 DVA GLGQRT LV+ + F+GLI+PH+TRFLVGVDYRWIIP Sbjct: 241 EDVAKGLGQRTALVKLAGMIIVLILAGSAVAVVGAVGFVGLIVPHMTRFLVGVDYRWIIP 300 Query: 301 CSAVLGSVLIIFADIAARMINAPYETPLGALIAVIGVPFFIYLASKRK 348 CSA+LGS+L++FAD+AARM+N PYETPLGALIA+IGVPFF+YLA K + Sbjct: 301 CSAILGSLLVVFADLAARMVNPPYETPLGALIALIGVPFFLYLARKER 348 >B3KCE5.1 B3KCE5_9BACI Transport system permease protein Length = 352 Score = 354 bits (908), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 180/349 (51%), Positives = 241/349 (69%), Gaps = 1/349 (0%) Query: 1 MVTSTHSQPR-THPEGEKQLKTRPXXXXXXXXXXXXXXXXXXXXSVSVGAADIRLASVWE 59 M++S S P T + +K RP S+S+GAADI L +VWE Sbjct: 1 MMSSNTSNPSITDAKTHANIKGRPWAATLILTGGVAALVLGIALSISLGAADIDLRNVWE 60 Query: 60 AVFRFNPELPQHQVIRELRIPRALAGALVGACFAVAGAIMQGMTRNPLADSGLLGLNAGA 119 AVF FNP++ +HQ+I+ELR+PR L GA+VGACFAV+GAIMQGMTRNPLADSGLLGLNAGA Sbjct: 61 AVFFFNPDVTEHQIIQELRLPRVLGGAMVGACFAVSGAIMQGMTRNPLADSGLLGLNAGA 120 Query: 120 SVGLALAFAFAPSMSFIYIMLYCFIGAAAASLLVFGIGSLSHSGLTPLRXXXXXXXXXXX 179 +A+ FAF P + ++Y++L+ F+GA ++LV+G+ S++ GLTP+R Sbjct: 121 GFVIAICFAFFPGLPYMYLILFSFLGAGLGAVLVYGVSSMAKGGLTPVRLVLAGAALSAL 180 Query: 180 XXXISQGIAILFHLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAALIGSLMISRSITLLSL 239 +S+GIA+ F + QD+AFW AGG G W L+IM PW+AAA++G++ +SRSIT+LSL Sbjct: 181 LSALSEGIALYFQVGQDMAFWYAGGTAGIKWVHLKIMLPWIAAAILGAIALSRSITMLSL 240 Query: 240 GRDVAAGLGQRTRLVQTXXXXXXXXXXXXXXXXXXPIAFIGLIIPHVTRFLVGVDYRWII 299 G D+A GLGQRT LV+ + F+GL+IPH+TR LVGVDYR II Sbjct: 241 GDDIAKGLGQRTGLVKLGGTVIVLVLAGAAVSVVGAVGFVGLMIPHLTRKLVGVDYRLII 300 Query: 300 PCSAVLGSVLIIFADIAARMINAPYETPLGALIAVIGVPFFIYLASKRK 348 PCSAVLGS+L++ AD+AARM+N PYETP+G++IA+IGVPFF+YLA K + Sbjct: 301 PCSAVLGSLLVVIADLAARMVNPPYETPVGSIIALIGVPFFLYLARKER 349 >B1I065.1 B1I065_LYSSC Iron compound ABC transporter, permease protein Length = 350 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 177/350 (50%), Positives = 232/350 (66%), Gaps = 3/350 (0%) Query: 1 MVTSTHSQPRTHPEGEKQLKTRPXXXXXXXXXXXXXXXXXXXXSVSVGAADIRLASVWEA 60 M TST E E Q ++ P S+S GAADI L++VW A Sbjct: 1 MTTSTGVGELNDLE-ELQKRSHPIRGVVALIVGVIGLILAIGLSISFGAADISLSTVWTA 59 Query: 61 VFRFNPELPQHQVIRELRIPRALAGALVGACFAVAGAIMQGMTRNPLADSGLLGLNAGAS 120 V F+PEL HQ+I ++R+PR L ALVGA FAVAGAIMQGMTRNPLADSGLLGLN+GA+ Sbjct: 60 VTHFSPELTTHQIIHDIRLPRVLGAALVGASFAVAGAIMQGMTRNPLADSGLLGLNSGAA 119 Query: 121 VGLALAFAFAPSMSFIYIMLYCFIGAAAASLLVFGIGSLSHSGLTPLRXXXXXXXXXXXX 180 LA+ FAF P M +I+++L+ FIGA +V+GIGSLS GLTP+R Sbjct: 120 FMLAVCFAFFPGMPYIFLILWSFIGAGLGVAIVYGIGSLSKGGLTPMRLVLAGAAVSALL 179 Query: 181 XXISQGIAILFHLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAALIGSLMISRSITLLSLG 240 + +GIA+ + + QD+AFW AGG+ GT W+ L+I+ PW+ A+IG+L++SRSIT+LSLG Sbjct: 180 GALGEGIALYYRIGQDLAFWYAGGVSGTKWSHLQILSPWILIAMIGALILSRSITVLSLG 239 Query: 241 RDVAAGLGQRTRLVQTXXXXXXXXXXXXXXXXXXPIAFIGLIIPHVTRFLVGVDYRWIIP 300 ++A GLGQRT +V+ + F+GLI+PH+TR++VG DYRWII Sbjct: 240 EEIAVGLGQRTAVVKIWGMIIVLILAGAAVSVVGAVGFVGLIVPHLTRYIVGHDYRWIIT 299 Query: 301 CSAVLGSVLIIFADIAARMINAPYETPLGALIAVIGVPFFIYLASKRKGG 350 CS V G++L++ AD+ AR+IN PYETP+GALIA IGVPFF+YLA RKGG Sbjct: 300 CSLVYGALLVVLADLVARIINPPYETPIGALIAFIGVPFFLYLA--RKGG 347 >A3IES5.1 A3IES5_9BACI Iron compound ABC transporter, permease protein Length = 350 Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 177/350 (50%), Positives = 231/350 (66%), Gaps = 3/350 (0%) Query: 1 MVTSTHSQPRTHPEGEKQLKTRPXXXXXXXXXXXXXXXXXXXXSVSVGAADIRLASVWEA 60 M TST E E Q ++ P S+S GAADI L +VW A Sbjct: 1 MTTSTGVGELNDLE-ELQKRSHPIRGVVALIVGVIGLILAIGLSISFGAADISLGTVWTA 59 Query: 61 VFRFNPELPQHQVIRELRIPRALAGALVGACFAVAGAIMQGMTRNPLADSGLLGLNAGAS 120 V F+PEL HQ+I ++R+PR L ALVGA FAVAGAIMQGMTRNPLADSGLLGLN+GA+ Sbjct: 60 VTHFSPELTTHQIIHDIRLPRVLGAALVGASFAVAGAIMQGMTRNPLADSGLLGLNSGAA 119 Query: 121 VGLALAFAFAPSMSFIYIMLYCFIGAAAASLLVFGIGSLSHSGLTPLRXXXXXXXXXXXX 180 LA+ FAF P M +++++L+ FIGA +V+GIGSLS GLTP+R Sbjct: 120 FMLAVCFAFFPGMPYMFLILWSFIGAGLGVTIVYGIGSLSKGGLTPMRLVLAGAAVSALL 179 Query: 181 XXISQGIAILFHLSQDIAFWMAGGIGGTSWTQLRIMFPWVAAALIGSLMISRSITLLSLG 240 + +GIA+ + + QD+AFW AGG+ GT W+ L+I+ PW+ A+IG+L++SRSIT+LSLG Sbjct: 180 GALGEGIALYYRIGQDLAFWYAGGVSGTKWSHLQILSPWILIAMIGALILSRSITVLSLG 239 Query: 241 RDVAAGLGQRTRLVQTXXXXXXXXXXXXXXXXXXPIAFIGLIIPHVTRFLVGVDYRWIIP 300 ++A GLGQRT +V+ + F+GLIIPH+TR++VG DYRWII Sbjct: 240 EEIAVGLGQRTGVVKVWGMIIVLILAGAAVSVVGAVGFVGLIIPHLTRYIVGHDYRWIIV 299 Query: 301 CSAVLGSVLIIFADIAARMINAPYETPLGALIAVIGVPFFIYLASKRKGG 350 CS V G++L++ AD+ AR+IN PYETP+GALIA IGVPFF+YLA RKGG Sbjct: 300 CSLVYGALLVVLADLVARIINPPYETPIGALIAFIGVPFFLYLA--RKGG 347 >B1D644.1 B1D644_9BACL Transport system permease protein Length = 343 Score = 341 bits (874), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 171/334 (51%), Positives = 225/334 (67%) Query: 15 GEKQLKTRPXXXXXXXXXXXXXXXXXXXXSVSVGAADIRLASVWEAVFRFNPELPQHQVI 74 G +K+RP SV+ GA DIR +VW AVF FNP HQ+I Sbjct: 7 GSSGIKSRPWTATFILTGGVIALLLGMALSVTFGAEDIRFTAVWSAVFHFNPANINHQII 66 Query: 75 RELRIPRALAGALVGACFAVAGAIMQGMTRNPLADSGLLGLNAGASVGLALAFAFAPSMS 134 +ELR+PR + AL+G+ FAVAGAIMQGMTRNPLADSGLLGLNAGA LAL FAF P Sbjct: 67 QELRLPRVIGDALIGSSFAVAGAIMQGMTRNPLADSGLLGLNAGAGFALALCFAFVPGAP 126 Query: 135 FIYIMLYCFIGAAAASLLVFGIGSLSHSGLTPLRXXXXXXXXXXXXXXISQGIAILFHLS 194 ++Y++LY F+GA + LV+GIG+L+ GLTP+R +S+G+++ FH+ Sbjct: 127 YLYLILYSFVGAGVGAGLVYGIGALARGGLTPVRLVLAGAALSALLSSLSEGLSLYFHIG 186 Query: 195 QDIAFWMAGGIGGTSWTQLRIMFPWVAAALIGSLMISRSITLLSLGRDVAAGLGQRTRLV 254 QD+AFW AGG+ G W Q++I+ PWV AAL+G++ +SRSIT+LSLG DVA LG R+ V Sbjct: 187 QDLAFWFAGGVAGIKWLQVKILLPWVIAALLGAVALSRSITMLSLGEDVARSLGLRSGWV 246 Query: 255 QTXXXXXXXXXXXXXXXXXXPIAFIGLIIPHVTRFLVGVDYRWIIPCSAVLGSVLIIFAD 314 + + F+GLI+PH+TR LVG+DYRWIIPCSAVLG +L++FAD Sbjct: 247 KMAGTVIVLILAGAAVSVAGAVGFVGLIVPHLTRRLVGIDYRWIIPCSAVLGGLLVVFAD 306 Query: 315 IAARMINAPYETPLGALIAVIGVPFFIYLASKRK 348 + ARM+N PYETP+GA++A+IGVPFF YLA K++ Sbjct: 307 LGARMVNPPYETPIGAILALIGVPFFFYLARKQR 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,686,989,427 Number of extensions: 59192449 Number of successful extensions: 245411 Number of sequences better than 1.0e-05: 5268 Number of HSP's gapped: 233867 Number of HSP's successfully gapped: 5717 Length of query: 352 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 215 Effective length of database: 1,770,017,148 Effective search space: 380553686820 Effective search space used: 380553686820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)