BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0039.p (345 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAG8.1 B1DAG8_9BACL Periplasmic binding protein 323 2e-86 C1PCS8.1 C1PCS8_BACCO Periplasmic binding protein 278 8e-73 C0ZBN3.1 C0ZBN3_BREBN Probable ABC transporter substrate binding... 271 6e-71 Q839H9.1 Q839H9_ENTFA Iron compound ABC transporter, substrate-b... 259 3e-67 C2JS90.1 C2JS90_ENTFA Iron (Fe3+) ABC superfamily ATP binding ca... 259 3e-67 >B1DAG8.1 B1DAG8_9BACL Periplasmic binding protein Length = 335 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 154/277 (55%), Positives = 196/277 (70%) Query: 69 EKTVTDAMGHKVTVPANPQRVLASYLEDYLVTLGVTPVAQWSVTNGVQDYLADELKDVPT 128 E+ +TD MGH+VT+PANPQR++ASYLEDYLV LGV PVAQWSV NG+Q+YL +LKD+PT Sbjct: 59 EQKLTDGMGHEVTIPANPQRIIASYLEDYLVALGVKPVAQWSVANGIQEYLQGDLKDIPT 118 Query: 129 ISFDLPLEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLGDEISKDWRKSLLKIGE 188 I++DLP EAV F PD I+ + ++V G YDQ KIAPT+VLGDE++ DWRK+LLKIGE Sbjct: 119 IAYDLPYEAVTSFTPDLLILGANSTVDGGKYDQYAKIAPTFVLGDEVNNDWRKALLKIGE 178 Query: 189 LLNKSAEXXXXXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETRSSGAVVYG 248 +L K + I D SVA +WL+ F++V + SSG V+Y Sbjct: 179 VLQKKDQAQKVLDDYNAKAADAKTKLQAAIPDQSVAAIWLVGNKFFVVSDKLSSGTVLYN 238 Query: 249 DLGLKLPNLVTEIPAASRATWNPISLEKLAELTADHIFLVNSDKTEGSEILNSPIWKGIP 308 DLGLK+PN+V EI A+ +WN ISLEKLA+L ADH+ LVNSDK GSE L PIW+ IP Sbjct: 239 DLGLKVPNVVKEISASGTGSWNEISLEKLADLDADHLILVNSDKATGSEALKDPIWQSIP 298 Query: 309 AVKAGNVHEFASNHSWLYSGAIANSKTIDDVLNSLVK 345 AVK G+V+E+ SWLY G +A+S+ ID+VL LVK Sbjct: 299 AVKNGHVYEYDRTSSWLYYGPVASSQMIDNVLKDLVK 335 >C1PCS8.1 C1PCS8_BACCO Periplasmic binding protein Length = 320 Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 140/275 (50%), Positives = 188/275 (68%), Gaps = 2/275 (0%) Query: 70 KTVTDAMGHKVTVPANPQRVLASYLEDYLVTLGVTPVAQWSVTNGVQDYLADEL-KDVPT 128 +TVTD MGHKV VPA+P+RV+A+YLED+LV LGV PVAQWSV+NG+Q+YL D+L K VP Sbjct: 46 RTVTDVMGHKVKVPAHPKRVIATYLEDHLVALGVKPVAQWSVSNGIQEYLQDDLLKGVPA 105 Query: 129 ISFDLPLEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLGDEISKDWRKSLLKIGE 188 IS+DLP E V F PD ++ + V+ G Y+Q +KIAPT+V+ + + DWRK LL +G+ Sbjct: 106 ISYDLPYEQVQKFKPDLILIDDASMVEGGKYEQYSKIAPTFVVSKKQNSDWRKELLTVGK 165 Query: 189 LLNKSAEXXXXXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETRSSGAVVYG 248 +LNK A+ + S A +WL+ F+IV + SSG V+Y Sbjct: 166 VLNKEAKAKQVLADYEKTAKKAKAQLAKNGKAPSAAAIWLVNNKFFIVSKNVSSGDVLYN 225 Query: 249 DLGLKLPNLVTEIPAASRATWNPISLEKLAELTADHIFLVNSDKTEGSEILNSPIWKGIP 308 DLGLK+P +V EI A + + WN ISLEKL EL AD+IFL+NSDKT +E L++ +WK IP Sbjct: 226 DLGLKVPAVVNEISAKATSNWNAISLEKLTELDADYIFLINSDKTHATE-LDNALWKSIP 284 Query: 309 AVKAGNVHEFASNHSWLYSGAIANSKTIDDVLNSL 343 AVK +V EF+++ WLYSGAIAN + I DVL ++ Sbjct: 285 AVKKHHVAEFSADTGWLYSGAIANKEMIRDVLKTI 319 >C0ZBN3.1 C0ZBN3_BREBN Probable ABC transporter substrate binding protein Length = 327 Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 135/277 (48%), Positives = 179/277 (64%), Gaps = 1/277 (0%) Query: 70 KTVTDAMGHKVTVPANPQRVLASYLEDYLVTLGVTPVAQWSV-TNGVQDYLADELKDVPT 128 + + DAMG++VTVPA PQRV+ASYLED+LV LGV PVAQWSV N VQ YL EL +P Sbjct: 51 RVLKDAMGNEVTVPAQPQRVIASYLEDHLVALGVKPVAQWSVGNNQVQGYLQKELGGIPA 110 Query: 129 ISFDLPLEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLGDEISKDWRKSLLKIGE 188 I +DLP E VM +PD I++S ++ Y Q +KIAPTY +G E + DWRK LL IGE Sbjct: 111 IPYDLPPEVVMSHSPDLIILESATLIEGDKYSQYSKIAPTYTIGKEKNSDWRKELLTIGE 170 Query: 189 LLNKSAEXXXXXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETRSSGAVVYG 248 +LNK E IG+ S A LW+ KN Y+ + SSG V+Y Sbjct: 171 VLNKGEEAKKVLADYETFAAKSKQKLQKEIGEKSAAALWITGKNVYVARQDLSSGDVLYK 230 Query: 249 DLGLKLPNLVTEIPAASRATWNPISLEKLAELTADHIFLVNSDKTEGSEILNSPIWKGIP 308 DLG K+P +V EI + A WN IS+EKLAEL A+++F+VNS+ T ++ P+W IP Sbjct: 231 DLGFKVPAIVQEISKSGDANWNAISMEKLAELDAEYLFIVNSNPTAVEQLQKDPVWTNIP 290 Query: 309 AVKAGNVHEFASNHSWLYSGAIANSKTIDDVLNSLVK 345 AVK GN + FA + SWLY+G IAN + I++VL++++K Sbjct: 291 AVKNGNAYTFAKDSSWLYTGVIANRQMIENVLSNVMK 327 >Q839H9.1 Q839H9_ENTFA Iron compound ABC transporter, substrate-binding protein Length = 312 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 133/274 (48%), Positives = 174/274 (63%), Gaps = 3/274 (1%) Query: 72 VTDAMGHKVTVPANPQRVLASYLEDYLVTLGVTPVAQWSVTNG-VQDYLADELKDVPTIS 130 VTD +G+KVTVPA P+R++ASYLEDYLV LG PVAQW+V G +QDYLA ELKDVPTIS Sbjct: 40 VTDTLGNKVTVPAKPKRIIASYLEDYLVALGEKPVAQWTVGQGSIQDYLAKELKDVPTIS 99 Query: 131 FDLPLEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLGDEISKDWRKSLLKIGELL 190 +DLP EAV+ F PD ++ S A V+ G Y + +KIAPTYV+ + + WR L I +L Sbjct: 100 YDLPYEAVLKFEPDLLLISSSALVEGGKYKEYSKIAPTYVVKNGENVTWRDQLEDIATVL 159 Query: 191 NKSAEXXXXXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETRSSGAVVYGDL 250 +K + S A+LW+ ++V + RSSG V+Y DL Sbjct: 160 DKKEQAKKVLEDYDTLTKGVQEYLGKKDAGKSAAVLWVTNNQVFMVSDNRSSGTVLYQDL 219 Query: 251 GLKLPNLVTEIPAASRATWNPISLEKLAELTADHIFLVNSDKTEGSEILNSPIWKGIPAV 310 GL++P LV EI + A WN +SLEKLAEL ADHIFLVNSD E + + IWK +PAV Sbjct: 220 GLQVPKLVEEISKNATADWNQVSLEKLAELDADHIFLVNSD--ESAPLFQEAIWKNLPAV 277 Query: 311 KAGNVHEFASNHSWLYSGAIANSKTIDDVLNSLV 344 K VH + SWLY+G IAN++ ++DV +L+ Sbjct: 278 KNNQVHTYDKKSSWLYNGPIANTQIVEDVKKALL 311 >C2JS90.1 C2JS90_ENTFA Iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein Length = 312 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 133/274 (48%), Positives = 174/274 (63%), Gaps = 3/274 (1%) Query: 72 VTDAMGHKVTVPANPQRVLASYLEDYLVTLGVTPVAQWSVTNG-VQDYLADELKDVPTIS 130 VTD +G+KVTVPA P+R++ASYLEDYLV LG PVAQW+V G +QDYLA ELKDVPTIS Sbjct: 40 VTDTLGNKVTVPAKPKRIIASYLEDYLVALGEKPVAQWTVGQGSIQDYLAKELKDVPTIS 99 Query: 131 FDLPLEAVMGFAPDFHIVQSEASVQNGLYDQLNKIAPTYVLGDEISKDWRKSLLKIGELL 190 +DLP EAV+ F PD ++ S A V+ G Y + +KIAPTYV+ + + WR L I +L Sbjct: 100 YDLPYEAVLKFEPDLLLISSSALVEGGKYKEYSKIAPTYVVKNGENVTWRDQLEDIATVL 159 Query: 191 NKSAEXXXXXXXXXXXXXXXXXXXSTVIGDDSVAILWLIKKNFYIVDETRSSGAVVYGDL 250 +K + S A+LW+ ++V + RSSG V+Y DL Sbjct: 160 DKKEQAKKVLEDYDTLTKGVQEYLGKKDAGKSAAVLWVTNNQVFMVSDNRSSGTVLYQDL 219 Query: 251 GLKLPNLVTEIPAASRATWNPISLEKLAELTADHIFLVNSDKTEGSEILNSPIWKGIPAV 310 GL++P LV EI + A WN +SLEKLAEL ADHIFLVNSD E + + IWK +PAV Sbjct: 220 GLQVPKLVEEISKNATADWNQVSLEKLAELDADHIFLVNSD--ESAPLFQEAIWKNLPAV 277 Query: 311 KAGNVHEFASNHSWLYSGAIANSKTIDDVLNSLV 344 K VH + SWLY+G IAN++ ++DV +L+ Sbjct: 278 KNNQVHTYDKKSSWLYNGPIANTQIVEDVKKALL 311 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,615,674,669 Number of extensions: 60084091 Number of successful extensions: 106033 Number of sequences better than 1.0e-05: 629 Number of HSP's gapped: 105776 Number of HSP's successfully gapped: 630 Length of query: 345 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 209 Effective length of database: 1,779,438,163 Effective search space: 371902576067 Effective search space used: 371902576067 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)