BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0037.p
         (146 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2SM77.1 C2SM77_BACCE Disulfide bond formation protein C              147   2e-34
A8FHE5.1 A8FHE5_BACP2 Disulfide dehydrogenase C                       144   2e-33
C2UXA5.1 C2UXA5_BACCE Disulfide bond formation protein C              142   1e-32
B4AGD1.1 B4AGD1_BACPU Disulfide bond formation protein C (Disulf...   141   2e-32
C4L3W6.1 C4L3W6_EXISA Disulphide bond formation protein DsbB          140   3e-32

>C2SM77.1 C2SM77_BACCE Disulfide bond formation protein C
          Length = 142

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 87/110 (79%)

Query: 9   RRHCLYLAWFVSVIAVAGSLYLSEVLKYEPCKLCWFQRIFMYPQLILLGIATYWNDKKII 68
           R + LY AW VS+IA  GSL+ SE+L + PC+LCW+QRI MYP  I+LGIAT++N+K + 
Sbjct: 11  RNYTLYFAWIVSMIATLGSLFFSEILGFIPCELCWYQRIMMYPLCIILGIATFYNEKNMK 70

Query: 69  PYVLPLSLIGGCISIYHYAEQKIPALSKVLPCTIGVPCNKDYLNYFGFIT 118
            YVLP+S+IGG IS+YHYA QK P++S++ PC  GVPCN DY+N+ GFIT
Sbjct: 71  KYVLPISIIGGSISLYHYAIQKFPSVSEINPCVQGVPCNVDYINWLGFIT 120


>A8FHE5.1 A8FHE5_BACP2 Disulfide dehydrogenase C
          Length = 137

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 82/106 (77%)

Query: 13  LYLAWFVSVIAVAGSLYLSEVLKYEPCKLCWFQRIFMYPQLILLGIATYWNDKKIIPYVL 72
           LY AW VS++A   SLYLSE+ K+ PC +CWFQRIFMYP ++LLGIAT+  D K+  YVL
Sbjct: 8   LYSAWIVSIVATMSSLYLSEIKKFIPCDMCWFQRIFMYPLVLLLGIATFRGDVKVKYYVL 67

Query: 73  PLSLIGGCISIYHYAEQKIPALSKVLPCTIGVPCNKDYLNYFGFIT 118
           PL++IG C SIYHY EQKIP  + + PC  G+PC+ DYLN+FGFIT
Sbjct: 68  PLAVIGACFSIYHYMEQKIPGFASIRPCLSGIPCSVDYLNWFGFIT 113


>C2UXA5.1 C2UXA5_BACCE Disulfide bond formation protein C
          Length = 129

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 82/104 (78%)

Query: 15  LAWFVSVIAVAGSLYLSEVLKYEPCKLCWFQRIFMYPQLILLGIATYWNDKKIIPYVLPL 74
           +AW VS+IA  GSL+ SE+L + PC+LCWFQRI MYP  I+LGIAT++N+K I  YVLP+
Sbjct: 1   MAWIVSMIATLGSLFFSEILGFIPCELCWFQRIMMYPLCIVLGIATFYNEKNIKKYVLPI 60

Query: 75  SLIGGCISIYHYAEQKIPALSKVLPCTIGVPCNKDYLNYFGFIT 118
           S+IGG IS+YHY  QK+P  S++ PC  GVPCN DY+N+ GFIT
Sbjct: 61  SIIGGSISLYHYTIQKVPGFSEINPCVQGVPCNVDYINWLGFIT 104


>B4AGD1.1 B4AGD1_BACPU Disulfide bond formation protein C (Disulfide
           oxidoreductase C)(Thiol-disulfide oxidoreductase C)
          Length = 137

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 81/106 (76%)

Query: 13  LYLAWFVSVIAVAGSLYLSEVLKYEPCKLCWFQRIFMYPQLILLGIATYWNDKKIIPYVL 72
           LY AW VS++A   SLYLSE+ K+ PC +CWFQRIFMYP ++LLGIAT+  D K+  YVL
Sbjct: 8   LYSAWIVSIVATMSSLYLSEIKKFIPCDMCWFQRIFMYPLVLLLGIATFRGDVKVKYYVL 67

Query: 73  PLSLIGGCISIYHYAEQKIPALSKVLPCTIGVPCNKDYLNYFGFIT 118
           PL++IG   SIYHY EQKIP  + + PC  G+PC+ DYLN+FGFIT
Sbjct: 68  PLAVIGAGFSIYHYMEQKIPGFASIRPCLSGIPCSVDYLNWFGFIT 113


>C4L3W6.1 C4L3W6_EXISA Disulphide bond formation protein DsbB
          Length = 137

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 88/137 (64%)

Query: 4   IAAFCRRHCLYLAWFVSVIAVAGSLYLSEVLKYEPCKLCWFQRIFMYPQLILLGIATYWN 63
           + +F  ++ LYLAW VS+ A  GSLY SE+ ++ PC+LCW QRIFMYP  ILLG+A + +
Sbjct: 1   MKSFLEKYGLYLAWLVSLTATLGSLYFSEIREFVPCELCWIQRIFMYPLTILLGVAVFTD 60

Query: 64  DKKIIPYVLPLSLIGGCISIYHYAEQKIPALSKVLPCTIGVPCNKDYLNYFGFITXXXXX 123
           D+ +  YVLPL++IGG +S+YHY  QK+P  +++ PC  GVPC+  Y+N+ GFIT     
Sbjct: 61  DRAVRKYVLPLTIIGGFVSLYHYLVQKVPGFAEIQPCAQGVPCSGQYINWLGFITIPFLA 120

Query: 124 XXXXXXXXXXXWTGRKE 140
                      W  +K 
Sbjct: 121 LTAFTLITILMWNVKKR 137


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.144    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 779,764,819
Number of extensions: 29056367
Number of successful extensions: 100406
Number of sequences better than 1.0e-05: 212
Number of HSP's gapped: 100357
Number of HSP's successfully gapped: 212
Length of query: 146
Length of database: 3,060,696,203
Length adjustment: 109
Effective length of query: 37
Effective length of database: 2,033,805,568
Effective search space: 75250806016
Effective search space used: 75250806016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)