BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0036.p
         (143 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9U7K1.1 A9U7K1_PHYPA Predicted protein (Fragment)                    110   4e-23
C3GW68.1 C3GW68_BACTU Disulfide bond formation protein D              107   4e-22
C3EFW0.1 C3EFW0_BACTK Disulfide bond formation protein D              107   4e-22
C2Y5S0.1 C2Y5S0_BACCE Disulfide bond formation protein D              107   4e-22
C2X6X1.1 C2X6X1_BACCE Disulfide bond formation protein D              107   4e-22

>A9U7K1.1 A9U7K1_PHYPA Predicted protein (Fragment)
          Length = 247

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 2/108 (1%)

Query: 15  VNMAFIGP--DSETASLAALSVYHQNNDAFWTYYDALYANQGDENAEWATEDFLVSLAEK 72
           +N   I P  DS TA+LAA SV+HQN D FW YY  L+ NQ DE  EWAT +FLV LA  
Sbjct: 1   MNYLIISPNADSNTAALAAQSVFHQNKDEFWKYYHVLFDNQQDEKTEWATPEFLVKLARD 60

Query: 73  EKLPVDLELLRKDIKERTYESELQNDISIAKDTGVTSTPTVFINGHKV 120
             + VD + L KDI+E+TY+ E+ + ++     GV STPT+++NG KV
Sbjct: 61  NNIKVDYDQLSKDIEEKTYQDEVDSHMATGNKLGVNSTPTLYVNGEKV 108


>C3GW68.1 C3GW68_BACTU Disulfide bond formation protein D
          Length = 210

 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 2   QEYVNQDKAAFYFVNMAFIGPDSETASLAALSVYHQNNDAFWTYYDALYANQGDENAEWA 61
           +EY+++ K   YF+N  FIG DS+  + A  ++Y Q+ D+FW +YD +Y NQ  +  EW 
Sbjct: 75  EEYIDKGKVQLYFINFPFIGKDSDLGAAAGEAIYKQDKDSFWIFYDEIYQNQKKDTEEWI 134

Query: 62  TEDFLVSLAEKEKLP-VDLELLRKDIKERTYESELQNDISIAKDTGVTSTPTVFINGHKV 120
           TED L+S+  KEKLP VD+E  +KD+  +  + +++ D   A+   V   P+V++NG+  
Sbjct: 135 TEDLLLSIV-KEKLPKVDVEQFKKDLHSKDIKEKVRKDSDRAQKLKVQGAPSVYVNGNLA 193

Query: 121 DKPFD--MEAIDAQIKS 135
           +  FD   +AID ++K 
Sbjct: 194 NPDFDSMKKAIDKELKK 210


>C3EFW0.1 C3EFW0_BACTK Disulfide bond formation protein D
          Length = 210

 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 2   QEYVNQDKAAFYFVNMAFIGPDSETASLAALSVYHQNNDAFWTYYDALYANQGDENAEWA 61
           +EY+++ K   YF+N  FIG DS+  + A  ++Y Q+ D+FW +YD +Y NQ  +  EW 
Sbjct: 75  EEYIDKGKVQLYFINFPFIGKDSDLGAAAGEAIYKQDKDSFWIFYDEIYQNQKKDTEEWI 134

Query: 62  TEDFLVSLAEKEKLP-VDLELLRKDIKERTYESELQNDISIAKDTGVTSTPTVFINGHKV 120
           TED L+S+  KEKLP VD+E  +KD+  +  + +++ D   A+   V   P+V++NG+  
Sbjct: 135 TEDLLLSIV-KEKLPKVDVEQFKKDLHSKDIKEKVRKDSDRAQKLKVQGAPSVYVNGNLA 193

Query: 121 DKPFD--MEAIDAQIKS 135
           +  FD   +AID ++K 
Sbjct: 194 NPDFDSMKKAIDKELKK 210


>C2Y5S0.1 C2Y5S0_BACCE Disulfide bond formation protein D
          Length = 210

 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 2   QEYVNQDKAAFYFVNMAFIGPDSETASLAALSVYHQNNDAFWTYYDALYANQGDENAEWA 61
           +EY+++ K   YF+N  FIG DS+  + A  ++Y Q+ D+FW +YD +Y NQ  +  EW 
Sbjct: 75  EEYIDKGKVQLYFINFPFIGKDSDLGAAAGEAIYKQDKDSFWIFYDEIYQNQKKDTEEWI 134

Query: 62  TEDFLVSLAEKEKLP-VDLELLRKDIKERTYESELQNDISIAKDTGVTSTPTVFINGHKV 120
           TED L+S+  KEKLP VD+E  +KD+  +  + +++ D   A+   V   P+V++NG+  
Sbjct: 135 TEDLLLSIV-KEKLPKVDVEQFKKDLHSKDIKEKVRKDSDRAQKLKVQGAPSVYVNGNLA 193

Query: 121 DKPFD--MEAIDAQIKS 135
           +  FD   +AID ++K 
Sbjct: 194 NPDFDSMKKAIDKELKK 210


>C2X6X1.1 C2X6X1_BACCE Disulfide bond formation protein D
          Length = 210

 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 2   QEYVNQDKAAFYFVNMAFIGPDSETASLAALSVYHQNNDAFWTYYDALYANQGDENAEWA 61
           +EY+++ K   YF+N  FIG DS+  + A  ++Y Q+ D+FW +YD +Y NQ  +  EW 
Sbjct: 75  EEYIDKGKVQLYFINFPFIGKDSDLGAAAGEAIYKQDKDSFWIFYDEIYQNQKKDTEEWI 134

Query: 62  TEDFLVSLAEKEKLP-VDLELLRKDIKERTYESELQNDISIAKDTGVTSTPTVFINGHKV 120
           TED L+S+  KEKLP VD+E  +KD+  +  + +++ D   A+   V   P+V++NG+  
Sbjct: 135 TEDLLLSIV-KEKLPKVDVEQFKKDLHSKDIKEKVRKDSDRAQKLKVQGAPSVYVNGNLA 193

Query: 121 DKPFD--MEAIDAQIKS 135
           +  FD   +AID ++K 
Sbjct: 194 NPDFDSMKKAIDKELKK 210


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 806,888,192
Number of extensions: 31021498
Number of successful extensions: 75374
Number of sequences better than 1.0e-05: 152
Number of HSP's gapped: 75417
Number of HSP's successfully gapped: 153
Length of query: 143
Length of database: 3,060,696,203
Length adjustment: 106
Effective length of query: 37
Effective length of database: 2,062,068,613
Effective search space: 76296538681
Effective search space used: 76296538681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)