BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0034.p (613 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A0L8N5.1 A0L8N5_MAGSM Sensor protein EC=2.7.13.3 252 6e-65 C0V055.1 C0V055_9BACT PAS domain S-box 244 1e-62 Q74AN8.1 Q74AN8_GEOSL Sensor protein EC=2.7.13.3 243 6e-62 B3E2W5.1 B3E2W5_GEOLS Sensor protein EC=2.7.13.3 241 1e-61 B3E375.1 B3E375_GEOLS Sensor protein EC=2.7.13.3 240 4e-61 >A0L8N5.1 A0L8N5_MAGSM Sensor protein EC=2.7.13.3 Length = 780 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 147/338 (43%), Positives = 203/338 (60%), Gaps = 12/338 (3%) Query: 256 NPSLRQTTGYGQEELSDYKSILFSTG--DEQALK--AAVKRAAQGQSGKLEIIVKTKSGA 311 +PS+R GY +E + + F+ + QA+ A R Q S +EI K Sbjct: 294 SPSIRTVLGYDPQEFMTHYATYFTENPINMQAVNHTEASIRGEQQASYVIEIFNKQGQAV 353 Query: 312 RLICSTTVFPLVNDKENYVYII---AEDITALAEQQQELLIAKNAAESAARMKSEFLATM 368 RL +P+ DK+ V + A D+T + ELL AK AE+A R KSEFLA M Sbjct: 354 RL--DVLEYPIF-DKDGRVIAVEGLAHDVTERHRAEFELLTAKEQAEAANRTKSEFLAMM 410 Query: 369 SHEIRTPLNGIIGINQLLAEEITAPDHQELLKLQNTSSLALLSVMNDVLDISRLEAENML 428 SHEIRTP+N I+G+ +LL+E P+ Q LK+Q + LL ++ND+LD+S+LEA + Sbjct: 411 SHEIRTPMNSILGMAELLSESPLTPEQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIE 470 Query: 429 LVKAPFKLPALLRECINLFAVAAGHKGLALNLEIAPSIPEQLIGDSARIRQILVNLIGNA 488 L PF LP LL+ ++L A +GLAL LE IP GD AR+RQI+VNL+GNA Sbjct: 471 LYIQPFNLPELLQSVVDLLENLARERGLALRLERMEEIPTLCQGDRARLRQIMVNLVGNA 530 Query: 489 VKFTHEGSITVTIEPCSKEGTSLGLLFRVSDTGIGIAPDKLELLFQPFSQVDASHNRKYQ 548 +KFTH+GS+ +++E S + T+ LLF V D+GIGIA +FQ F+Q+D+S++R Y Sbjct: 531 IKFTHDGSVKISVEKSSDDATN--LLFHVIDSGIGIAEKDQSSVFQRFTQIDSSNSRFYG 588 Query: 549 GTGLGLAICKKLVELMDGSIWTEKAREGGTDFFFKIPL 586 G+GLGLAI LVELM G IW + A G+ F F +PL Sbjct: 589 GSGLGLAITHHLVELMGGKIWLKSALGEGSCFTFTLPL 626 >C0V055.1 C0V055_9BACT PAS domain S-box Length = 1363 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 8/386 (2%) Query: 217 RKQVLFTAQFNEQRYTALFEFSPDMVVCIDPVRKKVISANPSLRQTTGYGQEELSDYKSI 276 RK++ +E+RY L E PD++ + R V NP+ + G + +S+ Sbjct: 698 RKEIERAITESEERYRRLVEAFPDLIAIVQDGR--VAYVNPAGARMLGAKDPQELVGRSV 755 Query: 277 LFSTGDEQALKAAVKRAAQGQSG----KLEIIVKTKSGARLICSTTVFPLVNDKENYVYI 332 L E+ + A + + G+ G +E T G + V P ++ I Sbjct: 756 LEFVHPERRGEVAAQIDSIGEGGPPPDSIEERFITLDGREIYAEVKVVPTSHEDRPASQI 815 Query: 333 IAEDITALAEQQQELLIAKNAAESAARMKSEFLATMSHEIRTPLNGIIGINQLLAEEITA 392 IA DIT +EL A++ A A+R+KSEF+A MSHEIRTPLN IIG+ +LL + + Sbjct: 816 IARDITESRRVAEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPLS 875 Query: 393 PDHQELLKLQNTSSLALLSVMNDVLDISRLEAENMLLVKAPFKLPALLRECINLFAVAAG 452 +E ++ TSS +LLS++ND+LD S++EA M+L + F L +L+ + A AA Sbjct: 876 ERQREFVQTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAAR 935 Query: 453 HKGLALNLEIAPSIPEQLIGDSARIRQILVNLIGNAVKFTHEGSITVTIEPCSKEGTSLG 512 KG++L + P+IP LIGD AR+RQ+L+NL+ NAVKFT +G + + + P + + Sbjct: 936 GKGISLMTFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLLRVLPHRAADSEVE 995 Query: 513 LLFRVSDTGIGIAPDKLELLFQPFSQVDASHNRKYQGTGLGLAICKKLVELMDGSIWTEK 572 LLF V DTGIGI L LFQPF+Q DAS R+Y GTGLGL I K LVELM G+IW E Sbjct: 996 LLFEVRDTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTIWAES 1055 Query: 573 AREGGTDFFF--KIPLQLMDTIPRQE 596 G+ F F + + M+ P Q+ Sbjct: 1056 QPGVGSTFRFTARFKVAAMERSPTQQ 1081 >Q74AN8.1 Q74AN8_GEOSL Sensor protein EC=2.7.13.3 Length = 982 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 210/370 (56%), Gaps = 6/370 (1%) Query: 216 DRKQVLFTAQFNEQRYTALFEFSPDMVVCIDPVRKKVISANPSLRQTTGYGQEELSDYKS 275 +R++ + +E + LFE + + IDPV ++ AN + G+ +E+L Sbjct: 325 ERRRAEEALRQSEALFRNLFEHHAAVKLIIDPVSGAIVDANNAAVSFYGWSREQLRAMNI 384 Query: 276 ILFSTGDEQALKAAVKRAAQGQSGKLEIIVKTKSGARLICSTTVFPL---VNDKENYVYI 332 + + L + ++ + ++ + + + VF V +E Y++ Sbjct: 385 RDINMLSPEELVSELENTKNME--RIHFFFRHRRADDSVRDVEVFSSRIEVKGRE-YLHS 441 Query: 333 IAEDITALAEQQQELLIAKNAAESAARMKSEFLATMSHEIRTPLNGIIGINQLLAEEITA 392 I D+T ++ELL+AK AESA R KSEFLA MSHEIRTP+NG+IG+ LL E A Sbjct: 442 IVHDVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLA 501 Query: 393 PDHQELLKLQNTSSLALLSVMNDVLDISRLEAENMLLVKAPFKLPALLRECINLFAVAAG 452 + + ++ TS+ +LL V++D+LD S++EA + + F L LL + A A Sbjct: 502 DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKAN 561 Query: 453 HKGLALNLEIAPSIPEQLIGDSARIRQILVNLIGNAVKFTHEGSITVTIEPCSKEGTSLG 512 KGL + P +P L+GD R++Q+LVNL GNA+KFTH+G I+V + +K G S+ Sbjct: 562 EKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQGEISVEVGSLTKTGDSVK 621 Query: 513 LLFRVSDTGIGIAPDKLELLFQPFSQVDASHNRKYQGTGLGLAICKKLVELMDGSIWTEK 572 L F V DTGIGI P+K ELLF+ F+Q DAS RKY GTGLGLAICK+LV++M G I Sbjct: 622 LRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTS 681 Query: 573 AREGGTDFFF 582 G++F+F Sbjct: 682 RPGVGSEFWF 691 >B3E2W5.1 B3E2W5_GEOLS Sensor protein EC=2.7.13.3 Length = 1287 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 141/356 (39%), Positives = 202/356 (56%), Gaps = 7/356 (1%) Query: 236 EFSPDMVVCIDPVRKKVISANPSLRQTTGYGQEELSDYKSILFSTG--DEQALKAAVKRA 293 E SP +VV D + N + TG+ E+ + + + G ++ + Sbjct: 537 ENSPAIVVITDHA-GSIEYVNSKFVEITGFAAEDALGHNPRILNAGVQSKEFYRQMWDTI 595 Query: 294 AQGQSGKLEIIVKTKSGARLICSTTVFPLVNDKENYVYIIA--EDITALAEQQQELLIAK 351 GQ + E + K+G ++ P+ +D + +A EDIT EL AK Sbjct: 596 NAGQEWRGEFCNRKKNGEMHWEHASISPIRDDHGRITHFVAVKEDITESRRIADELRRAK 655 Query: 352 NAAESAARMKSEFLATMSHEIRTPLNGIIGINQL-LAEEITAPDHQELLKLQNTSSLALL 410 AE+ R KSEFLA MSHEIRTPLN IIG N L L ++TA H L ++ N ++ +LL Sbjct: 656 EEAEAGNRSKSEFLANMSHEIRTPLNAIIGFNTLALETQLTAQQHDYLSRV-NFAATSLL 714 Query: 411 SVMNDVLDISRLEAENMLLVKAPFKLPALLRECINLFAVAAGHKGLALNLEIAPSIPEQL 470 ++N++LD S++EA + A F +L+ INLF A HKGL+L L + ++P +L Sbjct: 715 RIINEILDFSKIEAGKLEFEHAVFNPREVLQNIINLFQQQAAHKGLSLELHCSDNLPAEL 774 Query: 471 IGDSARIRQILVNLIGNAVKFTHEGSITVTIEPCSKEGTSLGLLFRVSDTGIGIAPDKLE 530 +GDS R+ Q+LVNL+GNAVKFT +G++++ P ++ L F V DTGIG+APDKL Sbjct: 775 VGDSVRLGQVLVNLVGNAVKFTEQGAVSLYASPTEYGCENVTLEFSVRDTGIGLAPDKLT 834 Query: 531 LLFQPFSQVDASHNRKYQGTGLGLAICKKLVELMDGSIWTEKAREGGTDFFFKIPL 586 LFQPF+Q D S RK+ GTGLGL+I K++VEL G IW E G+ F F +P Sbjct: 835 KLFQPFTQADGSITRKFGGTGLGLSISKRIVELTGGHIWAESEPGYGSVFSFNMPF 890 >B3E375.1 B3E375_GEOLS Sensor protein EC=2.7.13.3 Length = 704 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 131/329 (39%), Positives = 196/329 (59%), Gaps = 5/329 (1%) Query: 274 KSILFSTGDEQALKAAVKRAAQGQSGKLEIIVKTKSGA---RLICSTTVFPLVNDKENYV 330 + +L E L+A + A G S + + SG L + P V D+ +V Sbjct: 246 REMLPPRAAEVCLEALQEAEATGHSHGRQFFLPLPSGEIWFELSVARKTGP-VEDQPRFV 304 Query: 331 YIIAEDITALAEQQQELLIAKNAAESAARMKSEFLATMSHEIRTPLNGIIGINQLLAEEI 390 +++ DI+ + ++ELL A+ AAE+A+R KSEFLA MSHEIRTP+NG+IG+ LL Sbjct: 305 -VLSRDISDRKQHEKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGMAHLLGTTE 363 Query: 391 TAPDHQELLKLQNTSSLALLSVMNDVLDISRLEAENMLLVKAPFKLPALLRECINLFAVA 450 +P+ ++ L+ S+ +L++++ D+LD+SR+EA MLL F L ++E + Sbjct: 364 LSPEQEQYLENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCIQELLGSQQFQ 423 Query: 451 AGHKGLALNLEIAPSIPEQLIGDSARIRQILVNLIGNAVKFTHEGSITVTIEPCSKEGTS 510 K ++++ EIA +P+ L GD R RQIL+NL+GNA+KFT G +T+T + + E Sbjct: 424 INQKKISIHTEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGGVTITAQLVTSEENR 483 Query: 511 LGLLFRVSDTGIGIAPDKLELLFQPFSQVDASHNRKYQGTGLGLAICKKLVELMDGSIWT 570 + + VSDTGIG+ PD LE +F PF Q D S R+Y G+GLGLAIC++L ELM G IW Sbjct: 484 VLIHLAVSDTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGRIWA 543 Query: 571 EKAREGGTDFFFKIPLQLMDTIPRQEYSN 599 E EGG+ F ++P L + RQ+ N Sbjct: 544 ESGAEGGSTFHVELPFLLPEQTDRQQERN 572 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,185,875,500 Number of extensions: 121854195 Number of successful extensions: 426148 Number of sequences better than 1.0e-05: 28178 Number of HSP's gapped: 381223 Number of HSP's successfully gapped: 28459 Length of query: 613 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 471 Effective length of database: 1,722,912,073 Effective search space: 811491586383 Effective search space used: 811491586383 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)