BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0031.p (341 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9U696.1 A9U696_PHYPA Predicted protein (Fragment) 437 e-121 B3K6F7.1 B3K6F7_9BACI Putative uncharacterized protein 391 e-107 B1DIX1.1 B1DIX1_9BACL Putative uncharacterized protein 378 e-103 C0ZGW1.1 C0ZGW1_BREBN Conserved hypothetical membrane protein 329 2e-88 C0ZGT9.1 C0ZGT9_BREBN Conserved hypothetical membrane protein 315 5e-84 >A9U696.1 A9U696_PHYPA Predicted protein (Fragment) Length = 343 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/288 (70%), Positives = 250/288 (86%) Query: 36 VRSGRIDSLIEEGSKRAVAAGNIVHNLDGYLSACQLGITLASLALGWLGEPAVATIVGPI 95 VRS R+++L+EEG + AV A IV+NLD YLSACQLGITLASL LGWLGEPAVAT++ P+ Sbjct: 4 VRSSRVETLVEEGRRGAVYARKIVNNLDAYLSACQLGITLASLGLGWLGEPAVATLLRPL 63 Query: 96 VTSLGFGETSVYVISLIIAFMFITVLHIVLGELAPKTIAVNKAEAVLLLTAGAMNVFFRI 155 + SLGFGE +V+ I+++IAF+ IT+LHIVLGELAPKT+A+ KAE+V+L+++ M F ++ Sbjct: 64 LHSLGFGEAAVHGIAVVIAFLLITILHIVLGELAPKTMAIRKAESVVLMSSAIMIYFNKL 123 Query: 156 MYPIIWIVKGLASGLLRIFRLAPASELATAHTEEEIRIIMQESNKSGLIDNTEMTLVDNI 215 MYP IW++ GLA LLR+FR+APASE +AHTEEEIRI+M+ESNK+GLIDNTEM LVDNI Sbjct: 124 MYPFIWVLNGLAGSLLRVFRVAPASESDSAHTEEEIRILMKESNKNGLIDNTEMALVDNI 183 Query: 216 FEFADTMAREIMIPRTEMICLNNHLTVEENMEVAFDGMRTRYPVCDGDKDHILGFIHIKD 275 FEFA+T REIMIPRTEMICLN L+ EEN+E+A++GMRTRYPVCDGDKDHI+GF+HIKD Sbjct: 184 FEFAETTGREIMIPRTEMICLNTQLSREENLEIAYEGMRTRYPVCDGDKDHIIGFLHIKD 243 Query: 276 LIRDNAPKYSELIRPILTVPESIQISALLKVMQRAKTQIAILIDEYGG 323 L+ +Y+ LIRPILTVPESIQISALLK+MQR KTQIAILIDEYGG Sbjct: 244 LLHSTTLEYNTLIRPILTVPESIQISALLKLMQRGKTQIAILIDEYGG 291 >B3K6F7.1 B3K6F7_9BACI Putative uncharacterized protein Length = 439 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/303 (60%), Positives = 238/303 (78%), Gaps = 3/303 (0%) Query: 21 NGFFVSVEYAMVXXXVRSGRIDSLIEEGSKRAVAAGNIVHNLDGYLSACQLGITLASLAL 80 NGFFVS E A V V+ RID+L+EEG +RA A NI+ NLDGY+SACQ GIT+ S+ L Sbjct: 21 NGFFVSAELAFVK--VKRSRIDALVEEGHRRAQFAQNILKNLDGYISACQFGITIVSIGL 78 Query: 81 GWLGEPAVATIVGPIVTSLGFGETSVYVISLIIAFMFITVLHIVLGELAPKTIAVNKAEA 140 GW+GE ++ ++ P +G+ T+V+ +SL++AF+ I ++HIV G LAPKT+AV KAE Sbjct: 79 GWIGERTISAMITPWFNGIGWSNTAVHAVSLVLAFILIALMHIVFGALAPKTVAVRKAEQ 138 Query: 141 VLLLTAGAMNVFFRIMYPIIWIVKGLASGLLRIFRLAPASELATAHTEEEIRIIMQESNK 200 + LL+AG + VF+ IM+P IW GL++ +LRIFR+ P E HTEEE+R +M+ES++ Sbjct: 139 ITLLSAGPLRVFYTIMFPFIWFANGLSNNVLRIFRMKPVVE-RNVHTEEELRDMMKESSE 197 Query: 201 SGLIDNTEMTLVDNIFEFADTMAREIMIPRTEMICLNNHLTVEENMEVAFDGMRTRYPVC 260 SGL+D+TEMTLVDNIFEFADT AREIMIPRTEMICL N+L++EEN+++A +GMRTRYP+C Sbjct: 198 SGLMDSTEMTLVDNIFEFADTTAREIMIPRTEMICLYNNLSLEENLKIASEGMRTRYPIC 257 Query: 261 DGDKDHILGFIHIKDLIRDNAPKYSELIRPILTVPESIQISALLKVMQRAKTQIAILIDE 320 D DKDHI+GFIHIKDL+R LIRPI+ VPESI+IS LL+ MQR+KTQIAILIDE Sbjct: 258 DEDKDHIIGFIHIKDLMRGFVGDQLSLIRPIIAVPESIKISELLRRMQRSKTQIAILIDE 317 Query: 321 YGG 323 YGG Sbjct: 318 YGG 320 >B1DIX1.1 B1DIX1_9BACL Putative uncharacterized protein Length = 466 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/307 (60%), Positives = 238/307 (77%), Gaps = 6/307 (1%) Query: 21 NGFFVSVEYAMVXXXVRSGRIDSLIEEGSKRAVAAGNIVHNLDGYLSACQLGITLASLAL 80 NG FV+ E+AMV VR RI++L EG RA A ++ NLD YLSACQLGITLASL L Sbjct: 31 NGLFVAAEFAMVK--VRGTRIETLAAEGHMRAKLASHLTSNLDAYLSACQLGITLASLGL 88 Query: 81 GWLGEPAVATIVGPIVTSLGFGE-TSVYVISLIIAFMFITVLHIVLGELAPKTIAVNKAE 139 GW+GEPA+ ++ P +LG+G ++ IS +IAF+FIT+LHIVLGELAPKT+A+ KAE Sbjct: 89 GWIGEPAIKDLIEPWFLALGWGNPVWIHSISFVIAFLFITILHIVLGELAPKTLAIRKAE 148 Query: 140 AVLLLTAGAMNVFFRIMYPIIWIVKGLASGLLRIFRLAPASELATAHTEEEIRIIMQESN 199 +V LLTA + +F ++MYP IW++ GLA+ LL+ + PASE +AHTEEEIRI+MQES+ Sbjct: 149 SVTLLTATPLVMFHKLMYPFIWVLNGLANQLLKRLGVEPASEQHSAHTEEEIRILMQESH 208 Query: 200 KSGLIDNTEMTLVDNIFEFADTMAREIMIPRTEMICLNNHLTVEENMEVAFDGMRTRYPV 259 KSGLI+NTE+TLVDNIFEFA+T AREIMIPRTEM+CL HL++E+N +A + M TRYPV Sbjct: 209 KSGLINNTELTLVDNIFEFAETNAREIMIPRTEMVCLYVHLSLEDNKAIALNEMHTRYPV 268 Query: 260 CDGDKDHILGFIHIKDLIRDNAPKYS---ELIRPILTVPESIQISALLKVMQRAKTQIAI 316 CD DKD+I+GF+HIKDL++D + ++ R I TVP+S+QIS LL +MQ+ K QIAI Sbjct: 269 CDHDKDNIIGFVHIKDLLKDTTHSLTDIRQITRAITTVPDSMQISNLLILMQKRKAQIAI 328 Query: 317 LIDEYGG 323 LIDEYGG Sbjct: 329 LIDEYGG 335 >C0ZGW1.1 C0ZGW1_BREBN Conserved hypothetical membrane protein Length = 443 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 218/309 (70%), Gaps = 11/309 (3%) Query: 21 NGFFVSVEYAMVXXXVRSGRIDSLIEEGSKRAVAAGNIVHNLDGYLSACQLGITLASLAL 80 NGFFV+ E+A+V VR RI L EG+KRAV ++HNLD YLSACQLGITLASL L Sbjct: 24 NGFFVATEFAIVK--VRESRIAQLAAEGNKRAVDVERVLHNLDAYLSACQLGITLASLGL 81 Query: 81 GWLGEPAVATIVGPIVTSLGFGETSVYVISLIIAFMFITVLHIVLGELAPKTIAVNKAEA 140 GWLGEPA+A ++ P+ ET V IS IIAF IT LHIVLGELAPKT+A+ +E Sbjct: 82 GWLGEPAIAHLLHPVFGYFHLNETVVTSISFIIAFSLITFLHIVLGELAPKTLAIQYSEK 141 Query: 141 VLLLTAGAMNVFFRIMYPIIWIVKGLASGLLRIFR--LAPASELATAHTEEEIRIIMQES 198 V+L A + +F++IMYP I ++ AS L +F L P E AHTEEEIRI++ ES Sbjct: 142 VVLAVAKPIQLFYKIMYPFIQMLNWSASHFLGLFHISLEPHQE---AHTEEEIRILVNES 198 Query: 199 NKSGLIDNTEMTLVDNIFEFADTMAREIMIPRTEMICLNNHLTVEENMEVAFDGMRTRYP 258 +KSGLID TE+ LVDNIF+F++TMAREIM+PRT+M+ LN +EN++ +G TRYP Sbjct: 199 HKSGLIDQTELMLVDNIFDFSETMAREIMVPRTDMVVLNLRDPFDENVKHVQNGRFTRYP 258 Query: 259 VCDGDKDHILGFIHIKD----LIRDNAPKYSELIRPILTVPESIQISALLKVMQRAKTQI 314 V DGDKDH++G +HIKD L+ + +RPILTVPE+I IS LL ++Q+ + Q+ Sbjct: 259 VVDGDKDHVVGSLHIKDMLTGLLEGESHDLQTFMRPILTVPETISISRLLTMLQKQRGQM 318 Query: 315 AILIDEYGG 323 AI+IDEYGG Sbjct: 319 AIIIDEYGG 327 >C0ZGT9.1 C0ZGT9_BREBN Conserved hypothetical membrane protein Length = 452 Score = 315 bits (806), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 153/307 (49%), Positives = 215/307 (70%), Gaps = 7/307 (2%) Query: 22 GFFVSVEYAMVXXXVRSGRIDSLIEEGSKRAVAAGNIV-HNLDGYLSACQLGITLASLAL 80 GFFV+ E+++V VR R+ L+ EG+ ++ IV LD YLSACQLGITLASL L Sbjct: 23 GFFVAAEFSLVK--VRQTRLTQLVSEGNHKSARYAQIVTRELDAYLSACQLGITLASLGL 80 Query: 81 GWLGEPAVATIVGPIVTSLGFGETSVYVISLIIAFMFITVLHIVLGELAPKTIAVNKAEA 140 GW+GEPAVA V P++ F V SL IAF IT LHIV GELAPK++A+ KAEA Sbjct: 81 GWVGEPAVAHYVAPVIAFFHFPSYLVGPTSLAIAFAIITFLHIVFGELAPKSLAIQKAEA 140 Query: 141 VLLLTAGAMNVFFRIMYPIIWIVKGLASGLLRIFRLAPASELATAHTEEEIRIIMQESNK 200 L TA + F+++ YP+IW++ G A+ L+R + PA+E +AHTEEEIR++M +S+K Sbjct: 141 TSLWTAAPLMFFYKLSYPLIWLLNGAANLLIRRLGIEPANENESAHTEEEIRLLMNQSHK 200 Query: 201 SGLIDNTEMTLVDNIFEFADTMAREIMIPRTEMICLNNHLTVEENMEVAFDGMRTRYPVC 260 SG ID TEM LVDN+F F++ +AREIMIPR +MICL + T +EN+E+ + +R+PV Sbjct: 201 SGHIDKTEMALVDNVFVFSERLAREIMIPRIDMICLYDDNTFDENLEIMRESRHSRFPVA 260 Query: 261 DGDKDHILGFIHIKDL----IRDNAPKYSELIRPILTVPESIQISALLKVMQRAKTQIAI 316 DKD ++GF+HI D + + ++ +RP+LTVPES++IS +L++MQ+ ++Q+AI Sbjct: 261 HEDKDRLIGFVHISDFYLSALTTGKAELTDFLRPLLTVPESMEISHVLRLMQKRRSQLAI 320 Query: 317 LIDEYGG 323 +IDEYGG Sbjct: 321 VIDEYGG 327 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,649,166,999 Number of extensions: 64151408 Number of successful extensions: 200967 Number of sequences better than 1.0e-05: 3809 Number of HSP's gapped: 194495 Number of HSP's successfully gapped: 3809 Length of query: 341 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 205 Effective length of database: 1,779,438,163 Effective search space: 364784823415 Effective search space used: 364784823415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)