BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0028.p
         (190 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6F8.1 B3K6F8_9BACI Spore coat protein GerQ                         150   6e-35
B0TDZ4.1 B0TDZ4_HELMI Putative uncharacterized protein                125   2e-27
Q65DP9.1 Q65DP9_BACLD YwdL                                            120   4e-26
B1DJ47.1 B1DJ47_9BACL Spore coat protein GerQ                         118   3e-25
A6CR11.1 A6CR11_9BACI Putative uncharacterized protein                112   1e-23

>B3K6F8.1 B3K6F8_9BACI Spore coat protein GerQ
          Length = 144

 Score =  150 bits (379), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 75/88 (85%)

Query: 99  FEQSYIENIFRLNLGKVGTFYFTYENNKDWNAKVYTGVLEAAGRDHIIISDKATGQRIVL 158
           FEQSY+ENI RLNLGK  TFY TYENN  WNAKV+TG++EAAGRDHI+IS++ TG+RI+L
Sbjct: 55  FEQSYVENILRLNLGKQATFYMTYENNSQWNAKVFTGIIEAAGRDHIVISERTTGRRIIL 114

Query: 159 LMVNFDYATFDEPLIYQYPGTIGNPPTT 186
           LMVN DY  FDEPL YQYPG IGNPP T
Sbjct: 115 LMVNLDYVVFDEPLNYQYPGVIGNPPPT 142


>B0TDZ4.1 B0TDZ4_HELMI Putative uncharacterized protein
          Length = 169

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 64/85 (75%)

Query: 99  FEQSYIENIFRLNLGKVGTFYFTYENNKDWNAKVYTGVLEAAGRDHIIISDKATGQRIVL 158
            EQSYIENI RLN GKV T Y T+ENN  WNAK + G +EAAGRDHII+SD  TG+R +L
Sbjct: 81  LEQSYIENILRLNRGKVATIYMTFENNVQWNAKCFRGCIEAAGRDHIILSDPKTGKRYLL 140

Query: 159 LMVNFDYATFDEPLIYQYPGTIGNP 183
           LMVN DY TFDEP+ Y YPG +  P
Sbjct: 141 LMVNVDYVTFDEPIAYDYPGYLAPP 165


>Q65DP9.1 Q65DP9_BACLD YwdL
          Length = 178

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 65/84 (77%)

Query: 99  FEQSYIENIFRLNLGKVGTFYFTYENNKDWNAKVYTGVLEAAGRDHIIISDKATGQRIVL 158
            EQSYIENI RLN GKV T Y T+ENN +WNAKV+ G +EAAGRDHII+SD+ TG R +L
Sbjct: 91  LEQSYIENILRLNRGKVATVYMTFENNPEWNAKVFRGEIEAAGRDHIILSDRKTGTRYLL 150

Query: 159 LMVNFDYATFDEPLIYQYPGTIGN 182
           LMV  DY TFDEP+ Y YP ++ +
Sbjct: 151 LMVYLDYITFDEPITYDYPYSMAS 174


>B1DJ47.1 B1DJ47_9BACL Spore coat protein GerQ
          Length = 185

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%), Gaps = 3/86 (3%)

Query: 100 EQSYIENIFRLNLGKVGTFYFTYENNKDWNAKVYTGVLEAAGRDHIIISDKATGQRIVLL 159
           E+SY+ENI RLN GK+ TFY TYENN++WNAKV+ G++EAAGRDHIIISD +TG R +LL
Sbjct: 91  EESYVENILRLNRGKMATFYMTYENNREWNAKVFRGIIEAAGRDHIIISDPSTGMRYLLL 150

Query: 160 MVNFDYATFDEPLIYQYP---GTIGN 182
            +N DY TF+  + Y+YP   GTI N
Sbjct: 151 TLNLDYVTFEGEIAYEYPFQGGTITN 176


>A6CR11.1 A6CR11_9BACI Putative uncharacterized protein
          Length = 150

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 64/86 (74%)

Query: 100 EQSYIENIFRLNLGKVGTFYFTYENNKDWNAKVYTGVLEAAGRDHIIISDKATGQRIVLL 159
           E+SYIENI RLN GKV T Y T+ENN +WNAKV+ G++EAAGRDHII+SD  TG R +L 
Sbjct: 59  EESYIENILRLNKGKVATVYMTFENNTEWNAKVFKGIIEAAGRDHIILSDPQTGMRYLLP 118

Query: 160 MVNFDYATFDEPLIYQYPGTIGNPPT 185
           M+  DY TF+E + Y+YP   G  PT
Sbjct: 119 MIYLDYITFNEEIEYEYPFGAGAAPT 144


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 628,378,198
Number of extensions: 21782642
Number of successful extensions: 41160
Number of sequences better than 1.0e-05: 107
Number of HSP's gapped: 41157
Number of HSP's successfully gapped: 107
Length of query: 190
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 62
Effective length of database: 1,854,806,283
Effective search space: 114997989546
Effective search space used: 114997989546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)