BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0027.p
         (140 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6F9.1 B3K6F9_9BACI Cell wall hydrolase SleB                        204   2e-51
C0Z9A3.1 C0Z9A3_BREBN Cell wall hydrolase                             190   3e-47
C3H931.1 C3H931_BACTU Cell wall hydrolase cwlJ                        182   1e-44
C3FTK6.1 C3FTK6_BACTB Cell wall hydrolase cwlJ                        181   2e-44
C3DA79.1 C3DA79_BACTU Cell wall hydrolase cwlJ                        181   2e-44

>B3K6F9.1 B3K6F9_9BACI Cell wall hydrolase SleB
          Length = 140

 Score =  204 bits (520), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 108/140 (77%)

Query: 1   VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60
           +AVIKAN+ DV                     VGNVGVNRILGNCLDFRNIRN+NDMVFQ
Sbjct: 1   MAVIKANSNDVDLLARLIRAEAEGEGEQGMLMVGNVGVNRILGNCLDFRNIRNMNDMVFQ 60

Query: 61  SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120
           SPGGFEA QK YFYQRAR+ D +LA+R I GE+ WPASNALWFFRP G+CPATW++QQNT
Sbjct: 61  SPGGFEATQKGYFYQRARDRDRQLAQRVINGERIWPASNALWFFRPAGDCPATWYNQQNT 120

Query: 121 GRFKAHCFFTPSSEDCPAVF 140
           GRFKAHCFFTP+  DCP+VF
Sbjct: 121 GRFKAHCFFTPTYADCPSVF 140


>C0Z9A3.1 C0Z9A3_BREBN Cell wall hydrolase
          Length = 140

 Score =  190 bits (483), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 104/140 (74%)

Query: 1   VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60
           +AVIKAN+ DV                     VGNVGVNRILGNCLDF+NIR++ DMV+Q
Sbjct: 1   MAVIKANSKDVDMLARLIRAEAEGEGELGMLMVGNVGVNRILGNCLDFKNIRSMRDMVYQ 60

Query: 61  SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120
           SPGGFEA QK YFYQR R+ + RLA+RA+ GEKT PASNALWF+RP G CPATW+DQQN+
Sbjct: 61  SPGGFEAVQKPYFYQRTRDKERRLAQRAVNGEKTRPASNALWFYRPAGNCPATWWDQQNS 120

Query: 121 GRFKAHCFFTPSSEDCPAVF 140
           GR+KAHCFF P+  DCP V+
Sbjct: 121 GRYKAHCFFVPTPADCPRVY 140


>C3H931.1 C3H931_BACTU Cell wall hydrolase cwlJ
          Length = 140

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 99/140 (70%)

Query: 1   VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60
           + VI  N ADV+                    VGNVGVNR+ GNCLDF++IRN+  MV+Q
Sbjct: 1   MGVIAYNEADVKLLARLMRAEAEGEGQQGMLMVGNVGVNRVRGNCLDFKSIRNLRQMVYQ 60

Query: 61  SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120
           +PGGFEA QK YFYQRARE DI LARR I G++ WPA+ ALWFFRP G CP TW++QQN+
Sbjct: 61  NPGGFEATQKGYFYQRAREQDIALARRTIQGQRFWPANFALWFFRPEGACPPTWYNQQNS 120

Query: 121 GRFKAHCFFTPSSEDCPAVF 140
           GRFK HCFF PS EDCP+V+
Sbjct: 121 GRFKKHCFFQPSGEDCPSVY 140


>C3FTK6.1 C3FTK6_BACTB Cell wall hydrolase cwlJ
          Length = 140

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 99/140 (70%)

Query: 1   VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60
           + VI  N ADV+                    VGNVGVNR+ GNCLDF++IRN+  MV+Q
Sbjct: 1   MGVIAYNEADVKLLARLMRAEAEGEGQQGMLMVGNVGVNRVRGNCLDFKSIRNLRQMVYQ 60

Query: 61  SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120
           +PGGFEA QK YFYQRARE DI LARR I G++ WPA+ ALWFFRP G CP TW++QQN+
Sbjct: 61  NPGGFEATQKGYFYQRAREQDIALARRTIQGQRFWPANFALWFFRPEGPCPPTWYNQQNS 120

Query: 121 GRFKAHCFFTPSSEDCPAVF 140
           GRFK HCFF PS EDCP+V+
Sbjct: 121 GRFKKHCFFQPSGEDCPSVY 140


>C3DA79.1 C3DA79_BACTU Cell wall hydrolase cwlJ
          Length = 140

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 99/140 (70%)

Query: 1   VAVIKANTADVRTXXXXXXXXXXXXXXXXXXXVGNVGVNRILGNCLDFRNIRNVNDMVFQ 60
           + VI  N ADV+                    VGNVGVNR+ GNCLDF++IRN+  MV+Q
Sbjct: 1   MGVIAYNEADVKLLARLMRAEAEGEGQQGMLMVGNVGVNRVRGNCLDFKSIRNLRQMVYQ 60

Query: 61  SPGGFEAPQKSYFYQRARESDIRLARRAIGGEKTWPASNALWFFRPVGECPATWFDQQNT 120
           +PGGFEA QK YFYQRARE DI LARR I G++ WPA+ ALWFFRP G CP TW++QQN+
Sbjct: 61  NPGGFEATQKGYFYQRAREQDIALARRTIQGQRFWPANFALWFFRPEGPCPPTWYNQQNS 120

Query: 121 GRFKAHCFFTPSSEDCPAVF 140
           GRFK HCFF PS EDCP+V+
Sbjct: 121 GRFKKHCFFQPSGEDCPSVY 140


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 737,087,785
Number of extensions: 27939145
Number of successful extensions: 55115
Number of sequences better than 1.0e-05: 192
Number of HSP's gapped: 55075
Number of HSP's successfully gapped: 192
Length of query: 140
Length of database: 3,060,696,203
Length adjustment: 104
Effective length of query: 36
Effective length of database: 2,080,910,643
Effective search space: 74912783148
Effective search space used: 74912783148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)