BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0023.p (472 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7DP27.1 B7DP27_9BACL Amino acid permease-associated region 477 e-132 C1PS59.1 C1PS59_ALIAC Amino acid transporter 468 e-130 B6WRY7.1 B6WRY7_9DELT Putative uncharacterized protein 407 e-112 C3CTL9.1 C3CTL9_BACTU Amino acid transporter 402 e-110 C1UB16.1 C1UB16_9ACTN Amino acid transporter 375 e-102 >B7DP27.1 B7DP27_9BACL Amino acid permease-associated region Length = 455 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/451 (50%), Positives = 312/451 (69%), Gaps = 2/451 (0%) Query: 22 QGDKKTGYAQELKRTLTFKDLVTFGLITMLPIAPTQVYATASIESYGMAPLVYLVGVIAM 81 + D + GY QELKRTL +DL+ +G+I M+PIAP +Y + +S+GM PLVY++G++AM Sbjct: 7 RDDARLGYRQELKRTLRLRDLIVYGMIFMVPIAPMAIYGYVAQQSFGMVPLVYIIGIVAM 66 Query: 82 VFTALSYSAMSREFPIAGSAYSYVQRGMNPHVGFLTGWVIIMDYLIIPGMLIAFSNLWLS 141 VFTALSY MS +FPIAGS YSYVQRG+NPHVGF+ GW+I+ DYL+ P +L AFS WL Sbjct: 67 VFTALSYKQMSAKFPIAGSVYSYVQRGLNPHVGFVAGWMILADYLLAPSLLYAFSAGWLH 126 Query: 142 AILPGVPSLLIIVLFAAIITIVNVKGISLTKGASYLFLFCQLALIAIFIICGIKFVLMDG 201 +LP VP+ ++ F T+VNV GI+L +++ L +L + IF+I ++FVL G Sbjct: 127 GLLPSVPTFAWLLFFVLFNTVVNVLGITLQARTNFILLVIELICLLIFLIASVRFVLESG 186 Query: 202 HGMGSLSLEPFYQPGKIDFGFIATAASIAVLGFIGFDSISTLSEETKNPTRTVGPSVVAS 261 HG G LSL PFYQP + FI AASIAVL F+GFD+ISTL+EET+ P +TVG + +AS Sbjct: 187 HGAGHLSLSPFYQPSHFNLKFIENAASIAVLSFLGFDAISTLAEETERPEKTVGNATIAS 246 Query: 262 LVLIGLLFLGQSYTASLAHPDYSNLDPGMGYFDIIREVGGDALYYAFIIVGVVSVGIANA 321 LV+IGLLF+ Q+Y A+L HP+Y++L+P M +F I +E GG LY IIV V+ GIANA Sbjct: 247 LVIIGLLFVLQTYVAALVHPNYADLNPNMAFFQIAQEAGGTFLYVLLIIVNAVASGIANA 306 Query: 322 LTVQSAISRVIFSMSRDRLLPLSGFLSKIHPRYQTPANATIFVGFTSIVVALFLSLDFLA 381 L QSAISR+++SM RD LLP S F S++ R+QTP NAT+ V S++VA + + + Sbjct: 307 LAAQSAISRILYSMGRDNLLPFSTFFSRVSARFQTPVNATLLVAVISLLVASLVPQETIT 366 Query: 382 KLVNFGAMTTYMLLNLSVITYFFIRKKQRGLKGIIRYLISPLIGFGVVAFIWSGFDPMTY 441 LVNFGA+T ++LLN++V YF+IR QR + + +YL+ PL GF V+ ++W GFD T+ Sbjct: 367 TLVNFGALTAFLLLNVTVFVYFYIR--QRAFRHVFKYLLFPLCGFAVIGYVWLGFDRTTF 424 Query: 442 YIGFTWLFXXXXXXXXXXXXXXEVPPVLGDV 472 G +W+ EVPPVL D+ Sbjct: 425 IFGLSWMALGILIGAVKSKGYREVPPVLKDM 455 >C1PS59.1 C1PS59_ALIAC Amino acid transporter Length = 455 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/445 (50%), Positives = 308/445 (69%), Gaps = 2/445 (0%) Query: 28 GYAQELKRTLTFKDLVTFGLITMLPIAPTQVYATASIESYGMAPLVYLVGVIAMVFTALS 87 GY QELKR+L +DL+ +G+I M+PIAP +Y + +S+GM PLVY++G++AMVFTALS Sbjct: 13 GYRQELKRSLRLRDLIVYGMIFMVPIAPMAIYGYVAQQSFGMVPLVYIIGIVAMVFTALS 72 Query: 88 YSAMSREFPIAGSAYSYVQRGMNPHVGFLTGWVIIMDYLIIPGMLIAFSNLWLSAILPGV 147 Y MS +FPIAGS YSYVQRG+NPHVGF+ GW+I+ DYL+ P +L AFS WL ++P V Sbjct: 73 YKQMSAKFPIAGSVYSYVQRGLNPHVGFVAGWMILADYLLAPSLLYAFSAGWLHGLVPSV 132 Query: 148 PSLLIIVLFAAIITIVNVKGISLTKGASYLFLFCQLALIAIFIICGIKFVLMDGHGMGSL 207 P+L+ ++ F T+VNV GI+L +++ L +L + IF+I ++FV GHG G L Sbjct: 133 PTLVWLLFFVLFNTVVNVLGITLQARTNFILLAIELVCLLIFLIASVRFVFALGHGAGHL 192 Query: 208 SLEPFYQPGKIDFGFIATAASIAVLGFIGFDSISTLSEETKNPTRTVGPSVVASLVLIGL 267 S PFYQP + FI AASIAVL F+GFD+ISTL+EET+ P +TVG + +ASLV+IGL Sbjct: 193 SFNPFYQPSHFNLKFIENAASIAVLSFLGFDAISTLAEETERPEKTVGNATIASLVIIGL 252 Query: 268 LFLGQSYTASLAHPDYSNLDPGMGYFDIIREVGGDALYYAFIIVGVVSVGIANALTVQSA 327 LF+ Q+Y A+L HP+Y++L+P M +F I +E GG LY IIV V+ GIANAL QSA Sbjct: 253 LFVLQTYVAALVHPNYADLNPNMAFFQIAKEAGGTFLYILLIIVNAVASGIANALAAQSA 312 Query: 328 ISRVIFSMSRDRLLPLSGFLSKIHPRYQTPANATIFVGFTSIVVALFLSLDFLAKLVNFG 387 ISR+++SM RD LLP S F S + PR+QTP NAT+ V S++VA + + + LVNFG Sbjct: 313 ISRILYSMGRDNLLPFSKFFSHVSPRFQTPVNATLLVAVISLLVASLVPQETITTLVNFG 372 Query: 388 AMTTYMLLNLSVITYFFIRKKQRGLKGIIRYLISPLIGFGVVAFIWSGFDPMTYYIGFTW 447 A+T +++LN +V YF IR QRG + + +YL+ PL GF V+ ++W GFD T+ G +W Sbjct: 373 ALTAFLMLNATVFVYFSIR--QRGFRHVFKYLLFPLCGFVVIGYVWLGFDRTTFIFGLSW 430 Query: 448 LFXXXXXXXXXXXXXXEVPPVLGDV 472 + EVPPVL D+ Sbjct: 431 MALGILIGAVKSKGYREVPPVLKDM 455 >B6WRY7.1 B6WRY7_9DELT Putative uncharacterized protein Length = 459 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/422 (45%), Positives = 286/422 (67%), Gaps = 1/422 (0%) Query: 28 GYAQELKRTLTFKDLVTFGLITMLPIAPTQVYATASIESYGMAPLVYLVGVIAMVFTALS 87 GY QELKR L+FKD+ +G++ M+ IAP +Y S +S+ MAP VY VG+ AM FTALS Sbjct: 11 GYGQELKRELSFKDVFVYGMLFMVVIAPMSIYGYISKDSHMMAPFVYFVGICAMFFTALS 70 Query: 88 YSAMSREFPIAGSAYSYVQRGMNPHVGFLTGWVIIMDYLIIPGMLIAFSNLWLSAILPGV 147 Y MS FPIAGS Y+YVQRG+N HVGF+ GW+I++DY+ +P +L + W + P Sbjct: 71 YMKMSNRFPIAGSVYAYVQRGLNHHVGFIAGWLILLDYVFVPALLYLMTANWCVELFPAT 130 Query: 148 PSLLIIVLFAAIITIVNVKGISLTKGASYLFLFCQLALIAIFIICGIKFVLMDGHGMGSL 207 P + +++F I T++NV+GI+ T A ++ + + ++A+FI G+ +VL +G G G L Sbjct: 131 PRWMWVIVFVGINTLINVRGITYTARADWIMFYVEAVVLALFIGFGLNYVLGEGGGTGQL 190 Query: 208 SLEPFYQPGKIDFGFIATAASIAVLGFIGFDSISTLSEETKNPTRTVGPSVVASLVLIGL 267 ++P Y+PG+++ FI A +IA L F+GFD ISTL+EET P T+G + +A+L+ IG Sbjct: 191 VMDPLYRPGEMNLQFIGLACTIACLSFLGFDGISTLAEETHRPEVTIGRATMAALLCIGF 250 Query: 268 LFLGQSYTASLAHPDYSNLDPGMGYFDIIREVGGDALYYAFIIVGVVSVGIANALTVQSA 327 LF+ Q+Y A++ PD S ++P +FD GD ++V +++VGIAN + Q+A Sbjct: 251 LFMLQTYVATIIQPDMSKMNPDTAFFDAAEIAAGDWFRKVLLVVNILAVGIANTMNAQAA 310 Query: 328 ISRVIFSMSRDRLLP-LSGFLSKIHPRYQTPANATIFVGFTSIVVALFLSLDFLAKLVNF 386 SRV++ MSRD +LP +SG K+HPR+QTP ATI VG SI+VA +++ LA+LVNF Sbjct: 311 TSRVLYGMSRDNVLPGVSGLFRKVHPRFQTPYIATIAVGIFSILVAELSTVEDLARLVNF 370 Query: 387 GAMTTYMLLNLSVITYFFIRKKQRGLKGIIRYLISPLIGFGVVAFIWSGFDPMTYYIGFT 446 GA+T+++LLNL+V +F+ R+K RG K ++ Y+I P G ++ ++W FD MT +GF+ Sbjct: 371 GALTSFILLNLAVYNFFWRREKMRGGKALLNYVICPFCGVLILGYVWLSFDSMTQIVGFS 430 Query: 447 WL 448 WL Sbjct: 431 WL 432 >C3CTL9.1 C3CTL9_BACTU Amino acid transporter Length = 425 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 181/403 (44%), Positives = 284/403 (70%) Query: 47 LITMLPIAPTQVYATASIESYGMAPLVYLVGVIAMVFTALSYSAMSREFPIAGSAYSYVQ 106 +++M P+AP QVY + +S+GMAPLVY +G+I M FTALSY+ S+EF AGS Y++V Sbjct: 1 MVSMSPLAPFQVYGMVTNQSFGMAPLVYFIGMILMFFTALSYAQFSKEFLHAGSVYTFVS 60 Query: 107 RGMNPHVGFLTGWVIIMDYLIIPGMLIAFSNLWLSAILPGVPSLLIIVLFAAIITIVNVK 166 +G+NPHVGF+ GW ++ DY++ PG++ +F+ LW+S ++PGV ++ + F + TI+NVK Sbjct: 61 KGVNPHVGFVAGWTLLADYILAPGLVYSFAGLWMSGLVPGVNPVVWSLFFVLVNTIINVK 120 Query: 167 GISLTKGASYLFLFCQLALIAIFIICGIKFVLMDGHGMGSLSLEPFYQPGKIDFGFIATA 226 GI + + + + QL + +F+ IK+V +DGHG G SL P +QP ID+ F AT Sbjct: 121 GIEVNAKVNNILFYVQLIGLVVFVGLAIKYVFVDGHGTGGFSLAPLFQPEHIDWKFFATV 180 Query: 227 ASIAVLGFIGFDSISTLSEETKNPTRTVGPSVVASLVLIGLLFLGQSYTASLAHPDYSNL 286 SI V+GF+GFD +STLSEE++NP + + + V SL+ GLLFL +Y A+LAHP++++L Sbjct: 181 ISITVMGFMGFDCVSTLSEESQNPKKHIPLATVGSLICTGLLFLVLTYVATLAHPNHADL 240 Query: 287 DPGMGYFDIIREVGGDALYYAFIIVGVVSVGIANALTVQSAISRVIFSMSRDRLLPLSGF 346 + M FDI +E+GG+ + IIV V+S G+A L +QSA+SR++++M RD +LP SGF Sbjct: 241 NEEMALFDIAKEIGGNGFFQFMIIVNVLSAGVATTLNIQSAVSRIMYAMGRDNILPFSGF 300 Query: 347 LSKIHPRYQTPANATIFVGFTSIVVALFLSLDFLAKLVNFGAMTTYMLLNLSVITYFFIR 406 +K+H ++ TP N+ I G S ++ L S+ + +NFGA+T++ +LN++VI YFF + Sbjct: 301 FAKLHSKHDTPVNSIITAGVISTIIILVGSIPTVLMFINFGAVTSFTVLNMAVIYYFFFK 360 Query: 407 KKQRGLKGIIRYLISPLIGFGVVAFIWSGFDPMTYYIGFTWLF 449 KKQRG+KG + ++++P++G V ++W+GFD + Y GF+W+F Sbjct: 361 KKQRGIKGFLLHVMAPMVGILVCGYVWTGFDMLAYGAGFSWVF 403 >C1UB16.1 C1UB16_9ACTN Amino acid transporter Length = 466 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/466 (40%), Positives = 299/466 (64%), Gaps = 8/466 (1%) Query: 10 ESGSPERLSGMPQGDKKTGYAQELKRTLTFKDLVTFGLITMLPIAPTQVYATASIESYGM 69 + GSP + SG + ++ GY QEL+R + D+V +G++ M+ IAP ++ T S+GM Sbjct: 4 QDGSPAKASG--ENIEQFGYKQELRRGMGLWDVVLYGVLFMVIIAPQSIFGTIQQNSHGM 61 Query: 70 APLVYLVGVIAMVFTALSYSAMSREFPIAGSAYSYVQRGMNPHVGFLTGWVIIMDYLIIP 129 PLVY++G +A++FTA+SY MS+ FPIAGS YSYVQRG+NPHVGF+ GW+I++DY+++P Sbjct: 62 TPLVYIIGFVAILFTAMSYMRMSKRFPIAGSVYSYVQRGINPHVGFMAGWLILLDYVLVP 121 Query: 130 GMLIAFSNLWLSAILPGVPSLLIIVLFAAIITIVNVKGISLTKGASYLFLFCQLALIAIF 189 +LI W A++PG P+ L V F A T VN++GI +++G ++ ++ + F Sbjct: 122 SLLIVMVMNWGVALVPGSPAWLWAVAFIAFNTFVNIRGIQMSRGVDWVIFIVEIVAVVAF 181 Query: 190 IICGIKFVLMDGHGMGSLSLEPFYQPGKIDFGFIATAASIAVLGFIGFDSISTLSEETKN 249 I G FVL G G L+P YQPG++D F+A SIA L F+GFD +STL+EET Sbjct: 182 IALGTNFVLGG-GGAGGFVLDPIYQPGQVDAHFVAAGISIAALSFLGFDGMSTLAEETHE 240 Query: 250 PTRTVGPSVVASLVLIGLLFLGQSYTASLAHPDYSNLDPGMGYFDIIREVGGDALYYAFI 309 P + +G ++ +L +I ++F+ Q+Y A++ PD++ DP MG+FD + VGG Y + Sbjct: 241 PEKNIGKGIIIALSIIIVVFVAQTYIAAIVQPDWAATDPDMGFFDSVYLVGGPVFYKIML 300 Query: 310 IVGVVSVGIANALTVQSAISRVIFSMSRDRLLPLSGFLSKIHPRYQTPANATIFVGFTSI 369 +V +V+VGIAN + Q A SR+++SM RD ++P K+HP++QTP A+IF+G ++ Sbjct: 301 LVNIVAVGIANIINAQMASSRLLYSMGRDGVIPR--VFGKVHPKFQTPWFASIFLGAITL 358 Query: 370 VVALFLS--LDFLAKLVNFGAMTTYMLLNLSVITYFFIRKKQRG-LKGIIRYLISPLIGF 426 +AL L + LA VNFGA+++++LLN +V +FF+++K+R K I+ YLI P IG Sbjct: 359 CLALPLQDYMGTLAGFVNFGALSSFILLNFAVFWFFFVKEKKRASFKDILMYLICPFIGI 418 Query: 427 GVVAFIWSGFDPMTYYIGFTWLFXXXXXXXXXXXXXXEVPPVLGDV 472 ++ ++++GF+ TY +G TWL EVP ++ Sbjct: 419 AILGYVFTGFEWATYAVGVTWLVIGLIIGAVKSKGYKEVPEAFKNL 464 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.143 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,657,991,805 Number of extensions: 107973866 Number of successful extensions: 494263 Number of sequences better than 1.0e-05: 6730 Number of HSP's gapped: 486785 Number of HSP's successfully gapped: 6757 Length of query: 472 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 333 Effective length of database: 1,751,175,118 Effective search space: 583141314294 Effective search space used: 583141314294 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)