BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0015.p (367 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9DIL5.1 B9DIL5_STACT Putative uncharacterized protein 299 3e-79 Q5WC65.1 Q5WC65_BACSK Succinyl-diaminopimelate desuccinylase 297 1e-78 A6CMD5.1 A6CMD5_9BACI Succinyl-diaminopimelate desuccinylase 291 6e-77 Q2B366.1 Q2B366_9BACI Succinyl-diaminopimelate desuccinylase 290 2e-76 C0D6K6.1 C0D6K6_9CLOT Putative uncharacterized protein 289 2e-76 >B9DIL5.1 B9DIL5_STACT Putative uncharacterized protein Length = 359 Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 160/351 (45%), Positives = 214/351 (60%), Gaps = 12/351 (3%) Query: 18 VSLARRLIAFQNTSAERINCCTDYCTDWLRQHGLAVRCYEHGGLKSLVAELGTGDPVVVL 77 + L + LI F +++ + N +C +WL Q GL + G SL+ +G G+ ++L Sbjct: 5 LDLLKSLIEFDSSTKDEANKTLQFCKNWLEQEGLEPVRLSNEGFDSLICNVGAGEKRLIL 64 Query: 78 NGHLDVVPASPEEFIPYVEDGRLFGRGSYDMLGSVAAMMVLMSELATRP-PDCRVVLKLV 136 NGHLDVV +P +F P VE +++GRGS DM V+AMM +SEL + + V L+LV Sbjct: 65 NGHLDVVSGNPNQFEPKVEGNKIYGRGSADMKAGVSAMMSALSELQHKDLGNTSVQLQLV 124 Query: 137 PDEESGGELGTGHLVRQLGLVGDVAICGEPTNLNIAVQAKGILQVTIDVPGLAAHGSRPW 196 DEE GG+ G L Q G +GD ICGEPT L I QAKGILQV I + G +AHGSRPW Sbjct: 125 TDEEIGGKHGANFLTDQ-GYLGDFVICGEPTQLGIGYQAKGILQVDIHLKGKSAHGSRPW 183 Query: 197 LGKNAILEALRHFQAIASLRFFQESTPFFPQPSLNLAKIQAGTVFNQVPDLCRLSIDIRY 256 G NAI +AL +Q I +L F +EST F PS+NLAKI+ G+V+N+VPD +S DIR+ Sbjct: 184 EGDNAIEKALETYQKILNLPFAKESTELFEGPSINLAKIRGGSVYNKVPDEAVISYDIRF 243 Query: 257 LPGQDPAAILAAIREAVPQSEVNVHFEGSPVNTQISDRWVKKL-------RHHA--GSHF 307 LPGQ IL I + E+++H G+ V + + +++KL H + Sbjct: 244 LPGQSEKEILKQIENEI-DGEISIHLSGASVMNETDNPFIQKLVTEISQETHQSPESVKL 302 Query: 308 FGQDGSADTRFYAEQGIPAVEFGPSGANHHGPGEYVLIDSMLRYKEILKEF 358 FGQ G ADTR++A G PAVEFGPSGA HG GEY IDS+ YK+IL F Sbjct: 303 FGQHGFADTRYFARFGTPAVEFGPSGAAWHGDGEYAEIDSIKIYKDILVRF 353 >Q5WC65.1 Q5WC65_BACSK Succinyl-diaminopimelate desuccinylase Length = 360 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 155/352 (44%), Positives = 218/352 (61%), Gaps = 10/352 (2%) Query: 18 VSLARRLIAFQNTSAERINCCTDYCTDWLRQHGLAVRCYEHGGLKSLVAELGTGDPVVVL 77 + L + LI +++ +N +C +WL GL V + G LV+ +G+G +VL Sbjct: 5 IPLLKDLIRIDSSTKAGVNKAMAFCEEWLNDKGLPVERLVNNGYSMLVSSIGSGSNTIVL 64 Query: 78 NGHLDVVPASPEEFIPYVEDGRLFGRGSYDMLGSVAAMMVLMSELATRPPDCRVVLKLVP 137 NGH+DV+ S +F PY ++G+++GRGS DM +AAMM M+EL P RV L++VP Sbjct: 65 NGHIDVIEGSRSQFTPYTKEGKIYGRGSADMKAGLAAMMETMAELNGVPLPWRVQLQIVP 124 Query: 138 DEESGGELGTGHLVRQLGLVGDVAICGEPTNLNIAVQAKGILQVTIDVPGLAAHGSRPWL 197 DEE+GG GT +LV Q G GD ICGEPTN+ IA+Q+KG+LQV I + G AHGSRPW Sbjct: 125 DEETGGLYGTNYLVEQ-GHRGDFIICGEPTNMGIAIQSKGVLQVDIHIKGEPAHGSRPWE 183 Query: 198 GKNAILEALRHFQAIASLRFFQE-STPFFPQPSLNLAKIQAGTVFNQVPDLCRLSIDIRY 256 G NAIL+A ++AI L F QE + P F +PS+NLAK+Q GTV+N+VPD C +S+DIRY Sbjct: 184 GNNAILKAHALYEAILELPFAQEVAPPMFKEPSINLAKLQGGTVYNKVPDQCDMSLDIRY 243 Query: 257 LPGQDPAAILAAIREAVPQSEVNVHFEGSPVNTQISDRWVKKLRHH-------AGSHFFG 309 LP Q P+ IL I+ + V H SPV T+ + +V+ L + +G Sbjct: 244 LPDQSPSEILRQIK-GITDGVVRTHICNSPVKTKADNPFVQALADSLVAQTQLEKATLYG 302 Query: 310 QDGSADTRFYAEQGIPAVEFGPSGANHHGPGEYVLIDSMLRYKEILKEFITH 361 Q GS D +F+ + G AVEFGP G + HG E V DS+ +Y+ +L +F+ + Sbjct: 303 QHGSNDGQFFTKYGGNAVEFGPVGYDWHGDNEMVYTDSVRQYQAVLIDFLKN 354 >A6CMD5.1 A6CMD5_9BACI Succinyl-diaminopimelate desuccinylase Length = 382 Score = 291 bits (745), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 158/363 (43%), Positives = 219/363 (60%), Gaps = 8/363 (2%) Query: 2 SILTSPHFRNASADAIVSLARRLIAFQNTSAERINCCTDYCTDWLRQHGLAVRCYEHGGL 61 +I + R S + + L + L+ +++ E N ++C WL ++GL V ++ G Sbjct: 18 NITITTKRRRMSMENLKELLKELLLINSSTREGSNKAIEFCGQWLEENGLPVNIIQNNGY 77 Query: 62 KSLVAELGTGDPVVVLNGHLDVVPASPEEFIPYVEDGRLFGRGSYDMLGSVAAMMVLMSE 121 K LV E+G+GD V+ NGH+DVV E+FIP ++ +++ RGS DM VA MM M Sbjct: 78 KMLVTEIGSGDKKVIFNGHIDVVSGKEEQFIPREKNEKIYARGSADMKAGVACMMHAMVA 137 Query: 122 LATRPPDCRVVLKLVPDEESGGELGTGHLVRQLGLVGDVAICGEPTNLNIAVQAKGILQV 181 L + ++ L++V DEE GG TG+LV + G GD IC EPT L IA+QAKG+L++ Sbjct: 138 LKDEDLNTKIQLQIVSDEEIGGFNCTGYLVEE-GYTGDFVICSEPTQLGIALQAKGVLRL 196 Query: 182 TIDVPGLAAHGSRPWLGKNAILEALRHFQAIASLRFFQESTPFFPQPSLNLAKIQAGTVF 241 ++V G+ AHGSRPW G+NAI +A + I L F +ES+ ++P PSLNLA I+ G V+ Sbjct: 197 NVEVEGVPAHGSRPWEGENAIEKAFDVHKKIKELPFMKESSEYYPTPSLNLAIIEGGDVY 256 Query: 242 NQVPDLCRLSIDIRYLPGQDPAAILAAIREAVPQSEVNVHFEGSPVNTQISDRWVKKLR- 300 N+VP C L DIRYLP Q I+ I EAV S V V PV T I D +V K++ Sbjct: 257 NKVPAKCMLKYDIRYLPEQTKDRIVQEIEEAV-DSPVFVSMFSKPVRTDIDDFYVGKIKA 315 Query: 301 ---HHAGSH--FFGQDGSADTRFYAEQGIPAVEFGPSGANHHGPGEYVLIDSMLRYKEIL 355 G FFGQ GSADT+F+A+ GIPA+EFGP G N HG E V IDS+ Y+++L Sbjct: 316 AVEEQTGEKAVFFGQHGSADTQFFAQLGIPAIEFGPVGENWHGNKENVEIDSLYMYQKML 375 Query: 356 KEF 358 F Sbjct: 376 VNF 378 >Q2B366.1 Q2B366_9BACI Succinyl-diaminopimelate desuccinylase Length = 351 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 155/346 (44%), Positives = 210/346 (60%), Gaps = 8/346 (2%) Query: 19 SLARRLIAFQNTSAERINCCTDYCTDWLRQHGLAVRCYEHGGLKSLVAELGTGDPVVVLN 78 +L + LI+ ++ E N YC WL+ HGL V E+ G K LV+E+G+G+ +V N Sbjct: 4 NLLKELISINSSDKEGANEAVAYCGHWLKGHGLPVHIIENNGYKMLVSEIGSGNETIVWN 63 Query: 79 GHLDVVPASPEEFIPYVEDGRLFGRGSYDMLGSVAAMMVLMSELATRPPDCRVVLKLVPD 138 GH+DVV ++FIP +++GRG+ DM VAAMM EL P ++ L++V D Sbjct: 64 GHVDVVSGKEDQFIPVEVKDKIYGRGAADMKAGVAAMMCAFKELKEAPLGVKLQLQIVSD 123 Query: 139 EESGGELGTGHLVRQLGLVGDVAICGEPTNLNIAVQAKGILQVTIDVPGLAAHGSRPWLG 198 EE GG +G+L G GD IC EPT L IA+QAKG++++ I + G AHGSRPW G Sbjct: 124 EEIGGFNCSGYLAEN-GYRGDFVICSEPTQLGIALQAKGVMRLEIAIDGDPAHGSRPWEG 182 Query: 199 KNAILEALRHFQAIASLRFFQESTPFFPQPSLNLAKIQAGTVFNQVPDLCRLSIDIRYLP 258 NAI A + L F +ES+ F+P PS+NLAKI+ G V+N+VP+ C L DIRYLP Sbjct: 183 INAIERAYEVHGKLKELPFAKESSEFYPSPSINLAKIRGGDVYNKVPEKCELFYDIRYLP 242 Query: 259 GQDPAAILAAIREAVPQSEVNVHFEGSPVNTQISDRWVKKLRHHAGSH------FFGQDG 312 GQD I+ I E++ EV V P+ T + ++ KL+ H FFGQ G Sbjct: 243 GQDKDEIVKQI-ESITDGEVLVSMFSKPLQTARDNPFILKLKPVVDRHIKDEAVFFGQHG 301 Query: 313 SADTRFYAEQGIPAVEFGPSGANHHGPGEYVLIDSMLRYKEILKEF 358 SADT F+A GIPA+EFGPSG + HG EYVL +S+ YKE+L +F Sbjct: 302 SADTVFFANYGIPAIEFGPSGLHWHGDKEYVLPESVHVYKEMLVDF 347 >C0D6K6.1 C0D6K6_9CLOT Putative uncharacterized protein Length = 373 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 153/354 (43%), Positives = 207/354 (58%), Gaps = 7/354 (1%) Query: 12 ASADAIVSLARRLIAFQNTSAERINCCTDYCTDWLRQHGLAVRCYEHGGLKSLVAELGTG 71 A+ + + L +RLI F++ +AE N D+ +LR GL E+ G + L +G G Sbjct: 7 ANLEQMTELTKRLIGFRSNTAENANRALDFAAGYLRGRGLCPEVMENQGRRMLTCAVGEG 66 Query: 72 DPVVVLNGHLDVVPASPEEFIPYVEDGRLFGRGSYDMLGSVAAMMVLMSELATRPPDCRV 131 +VLNGHLDVV E++ P VE RL+GRG+YDMLG+ A MM L +LA P CRV Sbjct: 67 PRCLVLNGHLDVVDGREEQYSPRVEGDRLYGRGAYDMLGACAVMMALTGDLADSVPGCRV 126 Query: 132 VLKLVPDEESGGELGTGHLVRQLGLVGDVAICGEPTNLNIAVQAKGILQVTIDVPGLAAH 191 VL L EE+ GEL TG++V + GL GD AICGEPTNL ++V +KG+ +V V G AAH Sbjct: 127 VLSLSTTEETSGELCTGYMVEK-GLAGDFAICGEPTNLAVSVMSKGVFRVKARVHGRAAH 185 Query: 192 GSRPWLGKNAILEALRHFQAIASLRFFQESTPFFPQPSLNLAKIQAGTVFNQVPDLCRLS 251 SRPW G NA+L+A ++ I L F +F S+NL+ ++ G V NQVPD + Sbjct: 186 SSRPWQGDNALLKAYELYRGIEKLPFASRKNRYFDGASVNLSMVRGGVVMNQVPDYAEMV 245 Query: 252 IDIRYLPGQDPAAILAAIREAVPQSEVNVHFEGSPVNTQISDRWVKKLRH------HAGS 305 +DIRYLPG+D +L IR P +E+ V V D ++ +L A Sbjct: 246 VDIRYLPGEDTGEMLRQIRALDPTAEIEVTGTVEAVALAEDDPFLARLDRAVAAATKADC 305 Query: 306 HFFGQDGSADTRFYAEQGIPAVEFGPSGANHHGPGEYVLIDSMLRYKEILKEFI 359 F Q G+ADT F+ GIP+VEFGP+GA HHGP EYV + S+ + L E + Sbjct: 306 VRFAQHGAADTAFFQAAGIPSVEFGPAGAGHHGPDEYVELPSLGIFYSCLDEMV 359 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,285,837,164 Number of extensions: 99235164 Number of successful extensions: 244374 Number of sequences better than 1.0e-05: 2647 Number of HSP's gapped: 240347 Number of HSP's successfully gapped: 2652 Length of query: 367 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 230 Effective length of database: 1,770,017,148 Effective search space: 407103944040 Effective search space used: 407103944040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)