BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0011.p (500 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5D9.1 B1D5D9_9BACL Methyl-accepting chemotaxis sensory transd... 218 1e-54 B3K5W6.1 B3K5W6_9BACI Chemotaxis sensory transducer 216 5e-54 A7GKR7.1 A7GKR7_BACCN Methyl-accepting chemotaxis sensory transd... 158 1e-36 C2MVD3.1 C2MVD3_BACCE Methyl-accepting chemotaxis protein 157 3e-36 Q81IG6.1 Q81IG6_BACCR Methyl-accepting chemotaxis protein 155 7e-36 >B1D5D9.1 B1D5D9_9BACL Methyl-accepting chemotaxis sensory transducer Length = 583 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/498 (27%), Positives = 242/498 (48%), Gaps = 6/498 (1%) Query: 8 LDAVSDANKNVAQVYVFAPEIKDG-KNLIVAMPTHLVE----QGLKAGDIYENPPKTLQA 62 D + N N+AQ Y+F E+ DG K +VAMPT LVE + + GD+YE P A Sbjct: 85 FDQIHKYNPNIAQAYIFGTELADGNKTSLVAMPTSLVEAFSAENVNIGDMYEQPAAMANA 144 Query: 63 LEQAVATRQPVITDAYTDDFGTWISVMEPVLDNSGRVIAVMGMDVTASLLSENIQKVWMR 122 + + + T +P T Y+D FGTW SV+ P++D+ G + DV AS + E + K+ + Sbjct: 145 VAKMLKTGKPTFTSFYSDSFGTWTSVLYPIVDSQGNSLGFFAADVDASAVPEGLHKLLVN 204 Query: 123 XXXXXXXXXXXMLAVQYWLTRWTLAPVKELFKAIDEVSSGNLHVRLSTERSDDFGELNRK 182 + +Q++++R TL P++EL + I+EVS GNL+V L T DD G +N+K Sbjct: 205 GITIMVIFMLIIFLIQFFVSRRTLKPIQELVRGIEEVSKGNLNVELKTGL-DDLGTVNKK 263 Query: 183 FTKMAAELRNMISGVKDKAVQAAASSQEMADTVARNVDEHKIVGAAVERVXXXXXXXXXX 242 F M +++ +M+ V+ + S++ + + N ++ +V+ + Sbjct: 264 FNGMVSQINDMMLQVQHTSHAVTNSAKNLHEISELNSKNTNLITTSVQEISGGIGEQKQA 323 Query: 243 XXXXXRVMEEMSKGIQSIAETAYRVSXXXXXXXXXXXXXXXXIRKIVDQMSAISESVNLS 302 R M E++ IQ+IAE + +V+ +++++ QM I V+ S Sbjct: 324 TLDTARAMTELAAVIQTIAENSSKVAHEAYDMEQKSIEGNSAVKQVMTQMEQIQAVVSKS 383 Query: 303 AEKIKVLXXXXXXXXXXXXXXTGLASQTNXXXXXXXXXXXXXXXXXXXXXXXXEEVRKLA 362 IK+L ++ QTN EVRKLA Sbjct: 384 TSAIKLLDSRSQEIENIVSMIMSISGQTNLLALNAAIEAARVGEHGKGFAVVAGEVRKLA 443 Query: 363 DQSGQAAYRISGIIENIHRDTRQSAELMQAGLLEVGAGMELSKQTDEVFRRITEVIRSVS 422 +QS Q+A +IS +++ I R + E ++ G EV G++++ T+++ I + ++V+ Sbjct: 444 EQSDQSAKQISELVKEIQDVIRIAVEALEQGTYEVNDGLQITNTTEQLLNEILQATQNVT 503 Query: 423 AQTEDMSSVTEQMXXXXXXXXXXXXXXXXIARASAVGAAELSKSSTYQLASLNDISESAE 482 Q +++SS TE++ +AV +A++S S Q S++ I +S+ Sbjct: 504 MQIQEVSSSTEELSAGTEELTATSESLSSAVSVTAVNSAKISDSVEEQKESMSAIVDSST 563 Query: 483 HLSRMSSELEALTSKFKI 500 L+ +S +L+ L ++F++ Sbjct: 564 ELTALSEKLQKLLNQFQV 581 >B3K5W6.1 B3K5W6_9BACI Chemotaxis sensory transducer Length = 590 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 139/504 (27%), Positives = 249/504 (49%), Gaps = 6/504 (1%) Query: 2 KRIMAKLDAVSDANKNVAQVYVFAPEIKDG-KNLIVAMPTHLV----EQGLKAGDIYENP 56 K++ D +S N+AQ Y+F PE++DG K I+AMPT ++ E+ L GD+YE P Sbjct: 88 KKLTGTFDELSVTYPNIAQGYIFGPELEDGNKTSIIAMPTAVLDMFAEENLNLGDLYEQP 147 Query: 57 PKTLQALEQAVATRQPVITDAYTDDFGTWISVMEPVLDNSGRVIAVMGMDVTASLLSENI 116 A+ + + T++ V T AYTD++GTWI+V+ P +++G + A MG+DV ASL++ Sbjct: 148 KIHADAVREMMKTKKIVYTKAYTDNYGTWITVLHPFQNSNGEIFAYMGIDVDASLIASGK 207 Query: 117 QKVWMRXXXXXXXXXXXMLAVQYWLTRWTLAPVKELFKAIDEVSSGNLHVRLSTERSDDF 176 Q++ +LA+QY+ R T AP++ L A+D++S G+ V+L D+ Sbjct: 208 QELLTNTLFALLITLLIVLALQYFTIRRTFAPIQALMGALDKLSKGDFTVQLKA-GDDEL 266 Query: 177 GELNRKFTKMAAELRNMISGVKDKAVQAAASSQEMADTVARNVDEHKIVGAAVERVXXXX 236 G++N KF + +++ +K + Q+A S+ + V N + + +E + Sbjct: 267 GQVNAKFNTTVNHINELVTTIKSVSEQSAEQSKFLFSAVEINNNNSSAITKNMEEMSDRV 326 Query: 237 XXXXXXXXXXXRVMEEMSKGIQSIAETAYRVSXXXXXXXXXXXXXXXXIRKIVDQMSAIS 296 +EE+S G+ +IA +S + ++++QM++I Sbjct: 327 AVQSTSITESVVSLEEISSGVSTIAGNTSDLSEISIQMKAQSERGNHNVEQVIEQMNSID 386 Query: 297 ESVNLSAEKIKVLXXXXXXXXXXXXXXTGLASQTNXXXXXXXXXXXXXXXXXXXXXXXXE 356 SV S I+ L T +ASQTN Sbjct: 387 HSVKNSVHIIEKLQNRSHEIGQIVQVITEIASQTNLLSLNAGIEAARAGEEGRGFAVVAS 446 Query: 357 EVRKLADQSGQAAYRISGIIENIHRDTRQSAELMQAGLLEVGAGMELSKQTDEVFRRITE 416 EV+KL+++S ++A +I ++ I +T + E + G V GME+ K+T E+F+ + Sbjct: 447 EVKKLSEESRKSADQIIELVRYIQDETASAVEAISEGEHNVAKGMEVVKETGELFKGMLV 506 Query: 417 VIRSVSAQTEDMSSVTEQMXXXXXXXXXXXXXXXXIARASAVGAAELSKSSTYQLASLND 476 +V++Q +++S+ T+QM +A ++ + E+ S+ Q AS Sbjct: 507 ATDTVTSQIQEVSAATQQMVAETEQITAAIKQLAELAEKNSTVSGEIRISAQEQQASFAQ 566 Query: 477 ISESAEHLSRMSSELEALTSKFKI 500 I ESAE ++++S+ELEAL ++ ++ Sbjct: 567 IFESAEQINQVSAELEALVNRLRV 590 >A7GKR7.1 A7GKR7_BACCN Methyl-accepting chemotaxis sensory transducer Length = 580 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 127/501 (25%), Positives = 234/501 (46%), Gaps = 5/501 (0%) Query: 2 KRIMAKLDAVSDANKNVAQVYVFAPEI--KDGKNLIVAMPTHLVEQ-GLKAGDIYENPPK 58 +RI +LD V+ K+V QVY+ + KD IV + T L + +K GD ++ P Sbjct: 80 ERITEQLDKVAKDLKSVGQVYITGAKTNEKDAPQ-IVGLNTELAKSVTVKPGDYFDMPAH 138 Query: 59 TLQALEQAVATRQPVITDAYTDDFGTWISVMEPVLDNSGRVIAVMGMDVTASLLSENIQK 118 + A + + ++ +T+ Y D G+W++++EP++D +IAV+ DV AS++ Q+ Sbjct: 139 WMNAYHKVMDRKKAQMTEVYEDQLGSWVTILEPIMDKEKNIIAVVAADVDASIVPSTKQQ 198 Query: 119 VWMRXXXXXXXXXXXMLAVQYWLTRWTLAPVKELFKAIDEVSSGNLHVRLSTERSDDFGE 178 ++ + +Q+++ R +LAP++EL + + +V G+L+++L ERSDD G Sbjct: 199 FIIQGLIFMSISLVLAIGIQFFIVRSSLAPLQELREGLRKVGDGDLNIQLR-ERSDDIGI 257 Query: 179 LNRKFTKMAAELRNMISGVKDKAVQAAASSQEMADTVARNVDEHKIVGAAVERVXXXXXX 238 +N F + + +I VK A Q ++SSQE++ + N + + +++E + Sbjct: 258 INAYFNTTIQKFKAIIDKVKQTAEQVSSSSQELSASTEENNMAVQEIASSIEGLNEGAQS 317 Query: 239 XXXXXXXXXRVMEEMSKGIQSIAETAYRVSXXXXXXXXXXXXXXXXIRKIVDQMSAISES 298 ++ EM ++ I A V+ I +IV QM+ I + Sbjct: 318 QEASVQKCLHIVNEMGSSLEGITGAAKHVTSASESMEQHSLEGNEVISQIVKQMNLIQSA 377 Query: 299 VNLSAEKIKVLXXXXXXXXXXXXXXTGLASQTNXXXXXXXXXXXXXXXXXXXXXXXXEEV 358 V + I L TG+++QTN +EV Sbjct: 378 VQDLSSIIYSLENRSKQISDIVTVITGISNQTNLLALNASIEASRAGEAGRGFAVVADEV 437 Query: 359 RKLADQSGQAAYRISGIIENIHRDTRQSAELMQAGLLEVGAGMELSKQTDEVFRRITEVI 418 RKLA+Q+ +A I+ +I +T ++ MQ G EV +G+EL + E F +I + Sbjct: 438 RKLAEQTEASAKDIAKLIGETQAETEEAVVSMQKGSKEVESGIELVHSSGEFFNKILKSA 497 Query: 419 RSVSAQTEDMSSVTEQMXXXXXXXXXXXXXXXXIARASAVGAAELSKSSTYQLASLNDIS 478 +SV++Q + +S + + IA+ A + + +S Q ++ +I+ Sbjct: 498 QSVTSQVKAVSGTSSDVLQKSQGIVQVVNHLSQIAKTYAESSNHVEESMKEQEMTVQEIA 557 Query: 479 ESAEHLSRMSSELEALTSKFK 499 E A LS ++ EL+ L +FK Sbjct: 558 ELATSLSWLAQELQELIGEFK 578 >C2MVD3.1 C2MVD3_BACCE Methyl-accepting chemotaxis protein Length = 580 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 124/500 (24%), Positives = 231/500 (46%), Gaps = 3/500 (0%) Query: 2 KRIMAKLDAVSDANKNVAQVYVFAPEIKDGKNL-IVAMPTHLVEQ-GLKAGDIYENPPKT 59 +++ KLD VS K+V Q YV + + + L +V + T L +K GD YE P Sbjct: 80 EKLTEKLDEVSKELKSVGQTYVTGAKPNEKRELQLVGLTTELTNAFPIKPGDYYEQPAHW 139 Query: 60 LQALEQAVATRQPVITDAYTDDFGTWISVMEPVLDNSGRVIAVMGMDVTASLLSENIQKV 119 ++A ++ + T++ IT+ Y D+ G+W++++EP+ D ++A++ D+ AS++ +K Sbjct: 140 MKAYDKVIDTKKAQITEVYEDEIGSWVTILEPITDGENNIVAIIAADLDASIVPITKEKF 199 Query: 120 WMRXXXXXXXXXXXMLAVQYWLTRWTLAPVKELFKAIDEVSSGNLHVRLSTERSDDFGEL 179 ++ Q+++ R +LAP+K+L + + ++ G+L V+L ER DD G + Sbjct: 200 MIQGLLFIIISLAIATITQFFIVRHSLAPLKDLREGLRKIGEGDLSVKLK-ERPDDIGII 258 Query: 180 NRKFTKMAAELRNMISGVKDKAVQAAASSQEMADTVARNVDEHKIVGAAVERVXXXXXXX 239 N F + + +I V+ A Q ++SSQE++ + N + + +++E + Sbjct: 259 NVYFNNTIEKFKGIIDKVRQTAEQVSSSSQELSASTEENSMAVQEIASSIEGLRVGAQSQ 318 Query: 240 XXXXXXXXRVMEEMSKGIQSIAETAYRVSXXXXXXXXXXXXXXXXIRKIVDQMSAISESV 299 ++ M ++ I A +V+ I +I++QMS I +V Sbjct: 319 KTSVQQCLGIVHGMEDKVEEITGAAKQVAVASEGMEQHSIEGNEVIGQIINQMSLIQNAV 378 Query: 300 NLSAEKIKVLXXXXXXXXXXXXXXTGLASQTNXXXXXXXXXXXXXXXXXXXXXXXXEEVR 359 + I L TG+++QTN +EVR Sbjct: 379 QDLSSIIYSLETRSKEISDIVTVITGISNQTNLLALNASIEASRAGAAGRGFAVVADEVR 438 Query: 360 KLADQSGQAAYRISGIIENIHRDTRQSAELMQAGLLEVGAGMELSKQTDEVFRRITEVIR 419 KLA+Q+ +A I+ +I +T + MQ G EV G+ L + + + F +I++ + Sbjct: 439 KLAEQTEASAKDIAKLIGETQAETEDAVVSMQKGSREVETGISLVQSSGDFFEKISKSAQ 498 Query: 420 SVSAQTEDMSSVTEQMXXXXXXXXXXXXXXXXIARASAVGAAELSKSSTYQLASLNDISE 479 SV+ Q + +S + + IA A ++ + +S Q S+ DI+E Sbjct: 499 SVTDQVKAVSGNSSDILQNSQNIVQVVNELSHIANTYANSSSNVEESMKEQEISVQDIAE 558 Query: 480 SAEHLSRMSSELEALTSKFK 499 A LS +S EL+ L +FK Sbjct: 559 LATSLSWLSQELQELIGEFK 578 >Q81IG6.1 Q81IG6_BACCR Methyl-accepting chemotaxis protein Length = 580 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 123/500 (24%), Positives = 231/500 (46%), Gaps = 3/500 (0%) Query: 2 KRIMAKLDAVSDANKNVAQVYVFAPEIKDGKNL-IVAMPTHLVEQ-GLKAGDIYENPPKT 59 +++ KLD VS K+V Q YV + + + L +V + T L +K GD YE P Sbjct: 80 EKLTEKLDEVSKELKSVGQTYVTGAKPNEKRELQLVGLTTELTNAFPIKPGDYYEQPAHW 139 Query: 60 LQALEQAVATRQPVITDAYTDDFGTWISVMEPVLDNSGRVIAVMGMDVTASLLSENIQKV 119 ++A ++ + T++ +T+ Y D+ G+W++++EP+ D +IA++ D+ AS++ +K Sbjct: 140 MKAYDKVIDTKKAQMTEVYEDEIGSWVTILEPITDGENNIIAIVAADLDASIVPITKEKF 199 Query: 120 WMRXXXXXXXXXXXMLAVQYWLTRWTLAPVKELFKAIDEVSSGNLHVRLSTERSDDFGEL 179 ++ Q+++ R +LAP+K+L + + ++ G+L ++L ER DD G + Sbjct: 200 MIQGLLFIIISLAIATITQFFIVRHSLAPLKDLREGLRKIGEGDLSIKLK-ERPDDIGII 258 Query: 180 NRKFTKMAAELRNMISGVKDKAVQAAASSQEMADTVARNVDEHKIVGAAVERVXXXXXXX 239 N F + + +I V+ A Q ++SSQE++ + N + + +++E + Sbjct: 259 NVYFNNTIEKFKGIIDKVRQTAEQVSSSSQELSASTEENSMAVQEIASSIEGLRVGAQSQ 318 Query: 240 XXXXXXXXRVMEEMSKGIQSIAETAYRVSXXXXXXXXXXXXXXXXIRKIVDQMSAISESV 299 ++ M ++ I A +V+ I +I++QMS I +V Sbjct: 319 KTSVQQCLGIVHGMEDKVEEITGAAKQVAVASEGMEQHSIEGNEVIGQIINQMSLIQNAV 378 Query: 300 NLSAEKIKVLXXXXXXXXXXXXXXTGLASQTNXXXXXXXXXXXXXXXXXXXXXXXXEEVR 359 + I L TG+++QTN +EVR Sbjct: 379 QDLSSIIYSLETRSKEISDIVTVITGISNQTNLLALNASIEASRAGAAGRGFAVVADEVR 438 Query: 360 KLADQSGQAAYRISGIIENIHRDTRQSAELMQAGLLEVGAGMELSKQTDEVFRRITEVIR 419 KLA+Q+ +A I+ +I +T + MQ G EV G+ L + + + F +I++ + Sbjct: 439 KLAEQTEASAKDIAKLIGETQAETEDAVVSMQKGSKEVETGISLVQSSGDFFEKISKSAQ 498 Query: 420 SVSAQTEDMSSVTEQMXXXXXXXXXXXXXXXXIARASAVGAAELSKSSTYQLASLNDISE 479 SV+ Q + +S + + IA A ++ + +S Q S+ DI+E Sbjct: 499 SVTDQVKAVSGNSSDILQNSQNIVQVVNELSHIANTYANSSSNVEESMKEQEISVQDIAE 558 Query: 480 SAEHLSRMSSELEALTSKFK 499 A LS +S EL+ L +FK Sbjct: 559 LATSLSWLSQELQELIGEFK 578 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.125 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,847,261,293 Number of extensions: 57880785 Number of successful extensions: 161461 Number of sequences better than 1.0e-05: 2380 Number of HSP's gapped: 159670 Number of HSP's successfully gapped: 2381 Length of query: 500 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 360 Effective length of database: 1,741,754,103 Effective search space: 627031477080 Effective search space used: 627031477080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)