BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0010.p (436 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6H4.1 B3K6H4_9BACI Putative uncharacterized protein 333 2e-89 C1PWW5.1 C1PWW5_ALIAC Putative uncharacterized protein 78 2e-12 B9XC86.1 B9XC86_9BACT Immunoglobulin I-set domain protein 72 1e-10 C0YMU9.1 C0YMU9_9FLAO Possible glycosyl hydrolase, BNR protein 68 2e-09 B0K2R1.1 B0K2R1_THEPX Putative uncharacterized protein 63 7e-08 >B3K6H4.1 B3K6H4_9BACI Putative uncharacterized protein Length = 432 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 166/384 (43%), Positives = 234/384 (60%), Gaps = 6/384 (1%) Query: 54 GQTITLITPDAKNVNNEKTAKYQIQTRLTDFRLLNDSMGLAWGVTKNELRIYMTKDNGET 113 GQTITL+TPD E+ +KYQI TRLTDF LLN+S G+AWG+T ELR+Y T+D GET Sbjct: 50 GQTITLVTPDTAMKAPEEKSKYQIHTRLTDFHLLNESTGIAWGITNTELRLYQTEDYGET 109 Query: 114 WSNISPSANVQFLSNPVYGKDILFTDPSNGWIIRSASGLTETVVLRTTDGGSSWKVSSFP 173 W +ISPS+NVQF+ YGKDI+FTD ++GWIIR+ ET++L TTDGG SWK+SS P Sbjct: 110 WVDISPSSNVQFVDKLEYGKDIVFTDKNHGWIIRNKQRSAETILLNTTDGGGSWKLSSLP 169 Query: 174 DANAISSIYFNSPEDGWLMTSWDAKATKESKALYATSDGGATWSLVMQNEQY-NPNLPNN 232 + ++++ F S + GW+M D E K+L+ TS+ G W +MQN +Y +P + Sbjct: 170 ETGVVTAMSFVSSQQGWIMAKGDLSRGSEEKSLFHTSNNGGVWDEIMQNTEYPTSRIPGS 229 Query: 233 TIPISGVITGMIFKDISHGFVTMQTGALPKIYMTKDGAATWNPGPEFLVNDQLRDCDKVI 292 IP +G + G+ F D GF T++ K+Y+T+DG W + + L C V Sbjct: 230 VIPRTGSVIGLTFTDSLVGFATIREMQSSKLYITRDGGQKWKSSGQVFKSKLLDACGSVF 289 Query: 293 TGEPDFFDKGSLNGWMSVGCQKDKEGSITYNGYFTANGGENWKFVSFGLGPLTGINRH-- 350 G P + KG + + KE Y GYFTA+ G++W VSF P+TG + Sbjct: 290 AGTPKYLGKGGSGSEIYIPVTCVKEDQANYLGYFTADTGKSWNLVSF---PMTGNSGKGT 346 Query: 351 IPPTFLNSQVGWALKQDVLYKTTNQGKTWTALPASSVLRSKLVDYPEIVKLQFISGEVGW 410 I P F GW + ++Y T++ GKTWT P S +L L YP +VKLQF S +VGW Sbjct: 347 IQPVFRRLHDGWRMVNGIVYHTSDMGKTWTPFPRSKLLSDNLAKYPNVVKLQFTSSDVGW 406 Query: 411 LLIEKKEDRKSILLQTTNGGVSWR 434 +LIE + +S L+++++GGV+W+ Sbjct: 407 MLIETTDKNRSRLMKSSDGGVTWQ 430 >C1PWW5.1 C1PWW5_ALIAC Putative uncharacterized protein Length = 381 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/271 (26%), Positives = 118/271 (43%), Gaps = 20/271 (7%) Query: 157 VLRTTDGGSSWKVSSFP---DANAISSIYFNSPEDGWLMTSWDAKATKESKALYATSDGG 213 V T + G SW+V S P +A+ + + F +P GWL+ + + K +Y T +GG Sbjct: 100 VEYTWNAGVSWRVVSIPVSTEASVVCQLTFINPRTGWLVVESSGASEQSDKWIYQTLNGG 159 Query: 214 ATWSLVMQNEQYNPNLPNNTIPISGVITGMIFKDISHGFVTMQTGALPKI--YMTKDGAA 271 TW LV + P L ++G + F +++GF + LP I Y T DG Sbjct: 160 NTWHLVYRANSDVPRL------LAGTSQHLTFCTVTNGFWLVADPILPGISLYKTTDGGV 213 Query: 272 TWNPGPEFL-VNDQLRDCDKVITGEPDFFDKGSLNGWMSVG-CQKDKEGSITYNGYFTAN 329 W F+ V Q + D + P F +G +V D ++ + T + Sbjct: 214 HWK--RIFVSVPAQYANDDTIDVWGPTFSRNSPEDGVFAVTFYTSDVAPTMHLEVFETKD 271 Query: 330 GGENWKFVSFGLGPLTGINRHIPPTFLNSQVGWALKQDVLYKTTNQGKTWTALPASSVLR 389 GG W++V P N + F N+ + D +Y TT+ G+TW +S L Sbjct: 272 GGVTWRWVKVKNLPSEYGNYIL--RFFNTSIASLSLNDKIYNTTDGGRTWV---LNSDLD 326 Query: 390 SKLVDYPEIVKLQFISGEVGWLLIEKKEDRK 420 + ++ L+F S E WL+I +K +K Sbjct: 327 HWMTPNSYVLDLEFSSRETMWLIINRKPSQK 357 >B9XC86.1 B9XC86_9BACT Immunoglobulin I-set domain protein Length = 523 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 87/337 (25%), Positives = 133/337 (39%), Gaps = 64/337 (18%) Query: 124 QFLSNP----VYGKDILFTDPSNGWIIRSASGLTETVVLRTTDGGSSWKVSSFPDANAIS 179 QFL++P + DI FTDP+NGW + + RTT+GG SW + Sbjct: 29 QFLNSPGPSSIRHDDIYFTDPTNGWASQ------NNWIYRTTNGGMSWTTNLTSGGTHFR 82 Query: 180 SIYFNSPEDGWL----MTSWDAKATKESKALYATSDGGATWSLVMQNEQYNPNLPNNTIP 235 SI F +P+ G+ S+D T ++ LY + DGG TW+ N+P Sbjct: 83 SIAFATPQVGFAGNLGQGSYDG-GTTDTNVLYRSYDGGITWA----------NVPGFAEA 131 Query: 236 ISGVITGMIFKDISHGFVTMQTGALPKIYMTKDGAATWNPGPEFLVNDQLRDCDKVITGE 295 + + D H + + + DG W +VN V+ G Sbjct: 132 GMKGLCSIFVLDSQHIYGGGRVRGPAFFIKSTDGGTNWT-----MVN---LTAQNVMNGI 183 Query: 296 PDFFDKGSLNGWMSVGCQKDKEGSITYNGYF--TANGGENWKFVSFGLGPLTGINRHIPP 353 D + K NGW +VG S Y G T +GG W V + I Sbjct: 184 MDVYFKDPTNGW-AVGMDTHSFSSPPYYGRIARTTDGGATWTPV---------VTTTIAN 233 Query: 354 TFL------NSQVGW-ALKQD------VLYKTTNQGKTWTA--LPASSVLRSKLVDYPEI 398 + + +G+ AL+Q+ V YKTT+ G W + +P SSV + + Sbjct: 234 CYFWKMSWPATNIGYVALQQNGSSSTIVFYKTTDGGNNWVSNGIPLSSVGAASFY----L 289 Query: 399 VKLQFISGEVGWLLIEKKEDRKSILLQTTNGGVSWRV 435 L F++ GW+ + L TT+GG +W+ Sbjct: 290 QGLGFVNTNEGWMGGSSVAPYSTSFLHTTDGGATWQA 326 >C0YMU9.1 C0YMU9_9FLAO Possible glycosyl hydrolase, BNR protein Length = 688 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 141/347 (40%), Gaps = 86/347 (24%) Query: 100 NELRIYMTKDNGETW-----SNISPSANVQFLSNPVYGKDILFTDPSNGWIIRSASGLTE 154 N +I T D G TW +N+ PS FL+ + F + + G+ R L Sbjct: 168 NNGKIQKTIDGGNTWYNTYNTNVYPS---NFLT-------VYFINQNVGFASRQHDDL-- 215 Query: 155 TVVLRTTDGGSSWK--VSSFPDANAISSIYFNSPEDGWLMTSWDAKATKESKALYATSDG 212 +TTDGG SW SF A+ YF +G+ AT A Y T++G Sbjct: 216 ---FKTTDGGESWTEITGSFE---AMYDFYFLDENNGF--------ATGNYGATYKTTNG 261 Query: 213 GATWSLVMQNEQYNPNLPNNTIPISGVITGMIFKDISHGFVTMQTGALPKIYMTKDGAAT 272 G TWS + Y N + G+ F+D + GF TGA +I T DG T Sbjct: 262 GITWSQIFFQNGYFDNTS---------MYGIFFQDSNKGFA---TGARGRIIKTIDGGNT 309 Query: 273 W-NPGPEFLVNDQLRDCDKVITGEPDFFDKGSLNGWMSVGCQKDKEGSITYNGYFTANGG 331 W P + QL+ + V G+ Q Y T N G Sbjct: 310 WTQHSPTYNDFRQLQIVNNV--------------GFALTNNQF----------YKTNNFG 345 Query: 332 ENWKFV-SFGLGPLTGINRHIPPTFLNSQVGWALKQDV----LYKTTNQGKTWTALPASS 386 + W V + LG T +N TF+N +G+A +YKTT+ G TW L Sbjct: 346 DTWTLVGTLNLG--TSVNSS-DFTFINENLGYATTGGTYGGHVYKTTDGGSTWEILNNG- 401 Query: 387 VLRSKLVDYPEIVKLQFISGEVGWLLIEKKEDRKSILLQTTNGGVSW 433 + ++D I + F+ G G+ I ++K + ++TTNGG SW Sbjct: 402 ---NDIID-EGISSICFLDGNTGF--ISGGFNQKKV-MKTTNGGSSW 441 >B0K2R1.1 B0K2R1_THEPX Putative uncharacterized protein Length = 333 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 23/247 (9%) Query: 101 ELRIYMTKDNGETWSNISPSANVQFLSNPVYGKDIL--FTDPSNGWIIRSASGLTETV-V 157 +L++Y + D G+TW+ I + S ++I+ F D +N WI A + +T+ + Sbjct: 96 DLQLYKSDDGGKTWTQIYIPVDKIPESAYKDAENIVPYFMD-NNVWI---AWIVPQTLHI 151 Query: 158 LRTTDGGSSWKVSSFP---DANAISSIYFNSPEDGWLMTSWDAKATKESKALYATSDGGA 214 L+TTDGG +W + F AIS + F +PE+GW++T+ + A + L T+DGG Sbjct: 152 LKTTDGGLNWDIFKFEIGKYGEAISVLQFVTPEEGWILTTMNG-AGMQINYLLKTNDGGK 210 Query: 215 TWSLVMQNEQYNPNLPNNTIPISGVITGMIFKDISHGFVTMQTGALPK--IYMTKDGAAT 272 TW V + N + I + + M F D ++G++++ P ++ T DG T Sbjct: 211 TWENVNITGKKNY----DGIYSAANRSNMKFYDKNNGWISISNNLAPDPILFRTTDGGKT 266 Query: 273 WNPGPEFLVNDQLRDCDKVITGEPDFFDKGSLNGWMSV---GCQKDKEGSITYNGYFTAN 329 W+ + + ++C P F D S NG + + G KD + Y T + Sbjct: 267 WSQ-IKLSIPKSYKNCYLSSANVPVFTD--SKNGKLILEIYGPNKDNKLEKHILVYETID 323 Query: 330 GGENWKF 336 GG W+ Sbjct: 324 GGNTWRL 330 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,719,767,117 Number of extensions: 116190389 Number of successful extensions: 236219 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 236287 Number of HSP's successfully gapped: 35 Length of query: 436 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 297 Effective length of database: 1,751,175,118 Effective search space: 520099010046 Effective search space used: 520099010046 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)