BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0008.p (428 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BAL2.1 C3BAL2_BACMY Amino acid transporter 524 e-147 C3ASZ7.1 C3ASZ7_BACMY Amino acid transporter 524 e-147 C3BSF0.1 C3BSF0_9BACI Amino acid transporter 522 e-146 C5D7F4.1 C5D7F4_9BACI Amino acid permease-associated region 484 e-135 A4ILJ2.1 A4ILJ2_GEOTN Amino acid permease 478 e-133 >C3BAL2.1 C3BAL2_BACMY Amino acid transporter Length = 469 Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust. Identities = 256/385 (66%), Positives = 309/385 (80%), Gaps = 3/385 (0%) Query: 1 MDLFRKKPLTAPVSAGGEK---LSKTLGALDLTMLGVGAIIGTGIFVMTGVAAAEHAGPA 57 M+LFRKK ++A ++ +K L K LGA DLTMLGVGAIIGTGIFV+TGVAAAEHAGPA Sbjct: 1 MNLFRKKSISALLAQAEQKGASLKKELGAFDLTMLGVGAIIGTGIFVLTGVAAAEHAGPA 60 Query: 58 LVLSFVLAGIACVLSALCYSEFASTLPVSGSAYAYSYVAFGELLAWILGWDLVLEYXXXX 117 L+LSF+L+G+ACV +ALCYSEFAST+PVSGSAY YSY FGEL+AWILGWDL+LEY Sbjct: 61 LILSFILSGLACVFAALCYSEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGLAS 120 Query: 118 XXXXXXWSGYFQGLLEGFGLHLPTALSGAYNADKGTFXXXXXXXXXXXXXXXXTRGVKET 177 WSGYFQGLL GFG+ LPTAL+ AYN + GT+ TRG K++ Sbjct: 121 SAVASGWSGYFQGLLSGFGITLPTALTSAYNPEAGTYVDLPAICIIFLMTLLLTRGAKKS 180 Query: 178 ARFNAIMVVIKLSVVILFIVTGFFYVKPENWTPFMPFGFHGVVNGAATVFFAYIGFDALS 237 ARFNAIMV IKL VV+LFI G FYVKPENWTPFMPFGF GV GAATVFFAYIGFDA+S Sbjct: 181 ARFNAIMVAIKLFVVLLFIGVGAFYVKPENWTPFMPFGFSGVTTGAATVFFAYIGFDAVS 240 Query: 238 TAAEEVKRPQRDLPIGIISSLAICTVLYIVVSLVLTGIVPYQSLNVSDPVSFALRFVDQN 297 TAAEEVK PQR++PIGII+SL ICT+LYIVVSL+LTGIVPY L V +PV+FAL+++ Q+ Sbjct: 241 TAAEEVKNPQRNMPIGIIASLTICTILYIVVSLILTGIVPYDQLGVKNPVAFALQYIQQD 300 Query: 298 MVAGLISVGAIAGMTTVLLVLLFGQTRLLFAISRDGLLPEAWSKVSRKTHTPVRSTWLVG 357 +AG IS+GAI G+TTVLLV+L+GQTRL +AISRDGLLP+A S+V++KT TPV ++W+ Sbjct: 301 WIAGFISLGAITGITTVLLVMLYGQTRLFYAISRDGLLPKALSRVNKKTKTPVINSWITA 360 Query: 358 GIIAVLTGFVPLDRLANLTSIGTLF 382 ++A GF+PL++LA LT+IGTLF Sbjct: 361 TMVAFFAGFIPLNKLAELTNIGTLF 385 >C3ASZ7.1 C3ASZ7_BACMY Amino acid transporter Length = 469 Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust. Identities = 256/385 (66%), Positives = 309/385 (80%), Gaps = 3/385 (0%) Query: 1 MDLFRKKPLTAPVSAGGEK---LSKTLGALDLTMLGVGAIIGTGIFVMTGVAAAEHAGPA 57 M+LFRKK ++A ++ +K L K LGA DLTMLGVGAIIGTGIFV+TGVAAAEHAGPA Sbjct: 1 MNLFRKKSISALLAQAEQKGASLKKELGAFDLTMLGVGAIIGTGIFVLTGVAAAEHAGPA 60 Query: 58 LVLSFVLAGIACVLSALCYSEFASTLPVSGSAYAYSYVAFGELLAWILGWDLVLEYXXXX 117 L+LSF+L+G+ACV +ALCYSEFAST+PVSGSAY YSY FGEL+AWILGWDL+LEY Sbjct: 61 LILSFILSGLACVFAALCYSEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGLAS 120 Query: 118 XXXXXXWSGYFQGLLEGFGLHLPTALSGAYNADKGTFXXXXXXXXXXXXXXXXTRGVKET 177 WSGYFQGLL GFG+ LPTAL+ AYN + GT+ TRG K++ Sbjct: 121 SAVASGWSGYFQGLLSGFGITLPTALTSAYNPEAGTYVDLPAICIIFLMTLLLTRGAKKS 180 Query: 178 ARFNAIMVVIKLSVVILFIVTGFFYVKPENWTPFMPFGFHGVVNGAATVFFAYIGFDALS 237 ARFNAIMV IKL VV+LFI G FYVKPENWTPFMPFGF GV GAATVFFAYIGFDA+S Sbjct: 181 ARFNAIMVAIKLFVVLLFIGVGAFYVKPENWTPFMPFGFSGVTTGAATVFFAYIGFDAVS 240 Query: 238 TAAEEVKRPQRDLPIGIISSLAICTVLYIVVSLVLTGIVPYQSLNVSDPVSFALRFVDQN 297 TAAEEVK PQR++PIGII+SL ICT+LYIVVSL+LTGIVPY L V +PV+FAL+++ Q+ Sbjct: 241 TAAEEVKNPQRNMPIGIIASLTICTILYIVVSLILTGIVPYDQLGVKNPVAFALQYIQQD 300 Query: 298 MVAGLISVGAIAGMTTVLLVLLFGQTRLLFAISRDGLLPEAWSKVSRKTHTPVRSTWLVG 357 +AG IS+GAI G+TTVLLV+L+GQTRL +AISRDGLLP+A S+V++KT TPV ++W+ Sbjct: 301 WIAGFISLGAITGITTVLLVMLYGQTRLFYAISRDGLLPKALSRVNKKTKTPVINSWITA 360 Query: 358 GIIAVLTGFVPLDRLANLTSIGTLF 382 ++A GF+PL++LA LT+IGTLF Sbjct: 361 TMVAFFAGFIPLNKLAELTNIGTLF 385 >C3BSF0.1 C3BSF0_9BACI Amino acid transporter Length = 469 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 255/385 (66%), Positives = 308/385 (80%), Gaps = 3/385 (0%) Query: 1 MDLFRKKPLTAPVSAGGEK---LSKTLGALDLTMLGVGAIIGTGIFVMTGVAAAEHAGPA 57 M+LFRKK ++A ++ +K L K LGA DLTMLGVGAIIGTGIFV+TGVAAAEHAGPA Sbjct: 1 MNLFRKKSISALLAQAEQKGASLKKELGAFDLTMLGVGAIIGTGIFVLTGVAAAEHAGPA 60 Query: 58 LVLSFVLAGIACVLSALCYSEFASTLPVSGSAYAYSYVAFGELLAWILGWDLVLEYXXXX 117 L+LSF+L+G+ACV +ALCYSEFAST+PVSGSAY YSY FGEL+AWILGWDL+LEY Sbjct: 61 LILSFILSGLACVFAALCYSEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGLAS 120 Query: 118 XXXXXXWSGYFQGLLEGFGLHLPTALSGAYNADKGTFXXXXXXXXXXXXXXXXTRGVKET 177 WSGYFQGLL GFG+ LPTAL+ AYN + GT+ TRG K++ Sbjct: 121 SAVASGWSGYFQGLLSGFGITLPTALTSAYNPEAGTYVDLPAICIIFLMTLLLTRGAKKS 180 Query: 178 ARFNAIMVVIKLSVVILFIVTGFFYVKPENWTPFMPFGFHGVVNGAATVFFAYIGFDALS 237 ARFNAIMV IKL VV+LFI G FYVKPENWTPFMPFGF GV GAATVFFAYIGFDA+S Sbjct: 181 ARFNAIMVAIKLFVVLLFIGVGAFYVKPENWTPFMPFGFSGVTTGAATVFFAYIGFDAVS 240 Query: 238 TAAEEVKRPQRDLPIGIISSLAICTVLYIVVSLVLTGIVPYQSLNVSDPVSFALRFVDQN 297 TAAEEVK PQR++PIGII+SL ICT+LYIVVSL+LTGIVPY L V +PV+FAL+++ Q+ Sbjct: 241 TAAEEVKNPQRNMPIGIIASLTICTILYIVVSLILTGIVPYDQLGVKNPVAFALQYIQQD 300 Query: 298 MVAGLISVGAIAGMTTVLLVLLFGQTRLLFAISRDGLLPEAWSKVSRKTHTPVRSTWLVG 357 +AG IS+GAI G+TTVLLV+L+GQTRL +AISRDGLLP+ S+V++KT TPV ++W+ Sbjct: 301 WIAGFISLGAITGITTVLLVMLYGQTRLFYAISRDGLLPKVLSRVNKKTKTPVINSWITA 360 Query: 358 GIIAVLTGFVPLDRLANLTSIGTLF 382 ++A GF+PL++LA LT+IGTLF Sbjct: 361 TMVAFFAGFIPLNKLAELTNIGTLF 385 >C5D7F4.1 C5D7F4_9BACI Amino acid permease-associated region Length = 476 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 253/385 (65%), Positives = 300/385 (77%), Gaps = 3/385 (0%) Query: 1 MDLFRKKP---LTAPVSAGGEKLSKTLGALDLTMLGVGAIIGTGIFVMTGVAAAEHAGPA 57 M+LFRKK L G L K LGA DLTMLG+GAIIGTGIFV+TGVAAAEHAGPA Sbjct: 1 MNLFRKKSIQMLLHEADRKGASLKKDLGAFDLTMLGIGAIIGTGIFVLTGVAAAEHAGPA 60 Query: 58 LVLSFVLAGIACVLSALCYSEFASTLPVSGSAYAYSYVAFGELLAWILGWDLVLEYXXXX 117 LVLSF+L+G+ACV +ALCY+EFAST+PVSGSAY YSY FGEL+AWILGWDL+LEY Sbjct: 61 LVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGVAS 120 Query: 118 XXXXXXWSGYFQGLLEGFGLHLPTALSGAYNADKGTFXXXXXXXXXXXXXXXXTRGVKET 177 WSGYFQGLL GFG+ LP AL+ AY+ KGTF GVK++ Sbjct: 121 SAVAVGWSGYFQGLLSGFGIELPKALTNAYDPAKGTFIDLPAICIILFIIFLLNLGVKKS 180 Query: 178 ARFNAIMVVIKLSVVILFIVTGFFYVKPENWTPFMPFGFHGVVNGAATVFFAYIGFDALS 237 ARFNAIMVVIK++VV+LF+ G +YVKPENW+PFMPFGF GV GAATVFFAYIGFDA+S Sbjct: 181 ARFNAIMVVIKVAVVLLFLAVGVWYVKPENWSPFMPFGFSGVATGAATVFFAYIGFDAVS 240 Query: 238 TAAEEVKRPQRDLPIGIISSLAICTVLYIVVSLVLTGIVPYQSLNVSDPVSFALRFVDQN 297 TAAEEV+ PQR++PIGII+SL ICT+LYI VSLVLTGIVPY LNV +PV+FAL +++Q+ Sbjct: 241 TAAEEVRNPQRNMPIGIIASLFICTLLYIAVSLVLTGIVPYDQLNVKNPVAFALSYINQD 300 Query: 298 MVAGLISVGAIAGMTTVLLVLLFGQTRLLFAISRDGLLPEAWSKVSRKTHTPVRSTWLVG 357 VAG IS+GAIAG+TTVLLV+L+GQTRL +AISRDGLLP+ +SKV+ P +TWL G Sbjct: 301 WVAGFISLGAIAGITTVLLVMLYGQTRLFYAISRDGLLPKVFSKVNPTRQVPYVNTWLTG 360 Query: 358 GIIAVLTGFVPLDRLANLTSIGTLF 382 I+A G VPL++LA LT+IGTLF Sbjct: 361 IIVAFFAGVVPLNKLAELTNIGTLF 385 >A4ILJ2.1 A4ILJ2_GEOTN Amino acid permease Length = 471 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 243/385 (63%), Positives = 299/385 (77%), Gaps = 3/385 (0%) Query: 1 MDLFRKKPLTAPVSAGGEK---LSKTLGALDLTMLGVGAIIGTGIFVMTGVAAAEHAGPA 57 M+LFRKKP+ A ++ G K L K L A DLTMLG+GAIIGTGIFV+TGVAAAEHAGPA Sbjct: 1 MNLFRKKPIQALLNESGAKGASLRKELSAFDLTMLGIGAIIGTGIFVLTGVAAAEHAGPA 60 Query: 58 LVLSFVLAGIACVLSALCYSEFASTLPVSGSAYAYSYVAFGELLAWILGWDLVLEYXXXX 117 LVLSF L+ +ACV +ALCY+EFAST+PVSGSAY YSY AFGEL+AWILGWDL+LEY Sbjct: 61 LVLSFALSALACVFAALCYAEFASTVPVSGSAYTYSYAAFGELIAWILGWDLILEYGVAS 120 Query: 118 XXXXXXWSGYFQGLLEGFGLHLPTALSGAYNADKGTFXXXXXXXXXXXXXXXXTRGVKET 177 WSGYFQGLL GFG+ LP AL+ AY+ +KGT G K++ Sbjct: 121 SAVAAGWSGYFQGLLAGFGIELPKALTSAYDPEKGTIIDLPAIFIVLFITILLNMGAKKS 180 Query: 178 ARFNAIMVVIKLSVVILFIVTGFFYVKPENWTPFMPFGFHGVVNGAATVFFAYIGFDALS 237 ARFNAI+V +K++V++LF+ G +YVKPENWTPFMP+GF GV GAATVFFAYIGFDA+S Sbjct: 181 ARFNAIIVFVKVAVILLFLAVGVWYVKPENWTPFMPYGFAGVATGAATVFFAYIGFDAVS 240 Query: 238 TAAEEVKRPQRDLPIGIISSLAICTVLYIVVSLVLTGIVPYQSLNVSDPVSFALRFVDQN 297 TAAEEV+ PQR++PIGII SL +CT+LYI VSLVLTGIVPY LNV +PV+FAL ++ Q+ Sbjct: 241 TAAEEVRNPQRNMPIGIIVSLLVCTLLYIAVSLVLTGIVPYDQLNVKNPVAFALSYIQQD 300 Query: 298 MVAGLISVGAIAGMTTVLLVLLFGQTRLLFAISRDGLLPEAWSKVSRKTHTPVRSTWLVG 357 VAG IS+GAIAG+TTVLLV+L+GQTRL +AISRDGLLP+ ++++S P +TWL G Sbjct: 301 WVAGFISLGAIAGITTVLLVMLYGQTRLFYAISRDGLLPKVFARISPTRQIPYVNTWLTG 360 Query: 358 GIIAVLTGFVPLDRLANLTSIGTLF 382 ++V G +PL++LA LT+IGTLF Sbjct: 361 AAVSVFAGVIPLNKLAELTNIGTLF 385 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,329,102,828 Number of extensions: 90161407 Number of successful extensions: 360710 Number of sequences better than 1.0e-05: 5401 Number of HSP's gapped: 357330 Number of HSP's successfully gapped: 6122 Length of query: 428 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 289 Effective length of database: 1,751,175,118 Effective search space: 506089609102 Effective search space used: 506089609102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)