BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0006.p (303 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K713.1 B3K713_9BACI Integrase family protein 276 1e-72 B1DMI6.1 B1DMI6_9BACL Integrase family protein 271 5e-71 B8CX42.1 B8CX42_HALOH Phage integrase family protein 166 2e-39 B3PEI6.1 B3PEI6_CELJU Tyrosine recombinase XerC 141 6e-32 C4L240.1 C4L240_EXISA Integrase family protein 139 3e-31 >B3K713.1 B3K713_9BACI Integrase family protein Length = 311 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 133/295 (45%), Positives = 190/295 (64%) Query: 8 YEEELEAFVIWMKDAGFTPYTQKSYLADVREFLGSLNGKSLENVKKLHIISYLTSVRERG 67 YE E++ F+ +MKD + TQ++YL D++ FL SL GK + V + ++ YLT VRE G Sbjct: 10 YEREMKLFLSYMKDREYAKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESG 69 Query: 68 VSDATRNRKHASVNCLFKALMELELLAANPAAGIKKSKTEKNREPVYLEEHELQRFLSAV 127 RNR +++ +K ++ +L + NPA I+K+K EKNR+P YL++ L L+ + Sbjct: 70 AGARYRNRCQSAIRLFYKVMIRFKLASTNPAMDIEKAKVEKNRQPTYLQKPILDACLNGI 129 Query: 128 EGKYRSRNLAVFLLMSYMGLRVGEVHTLNLSDYNAERLTLRVFGKGRKWRNIPVPAELAP 187 EG+YR R++ + LM+Y GLRV E+ LN++D + E ++ V GKG KWR IP+PAEL Sbjct: 130 EGRYRIRDVTIIALMAYAGLRVSEIVKLNVTDVDMENSSIGVLGKGSKWRYIPLPAELNK 189 Query: 188 FLEQALSERLEPWRSKEEAMFISQKGRRLSIRAIQGIAADTFGRFQAEVPAARRRPYSSH 247 L+ L ER+ P SK+ A F+SQ RR+S R +Q IA TF + P + S+H Sbjct: 190 LLQMYLEERMAPRSSKDNAFFVSQFRRRISKRMVQTIAEKTFAAMTEQFPQLSGQSLSAH 249 Query: 248 KLRHSFATMLLRKGADLRTVQELLGHSSIQTTTVYTHITNREKEEAMARLQISMP 302 KLRHSFAT LLR GADLR VQELLGH I TT +YTH+ + KE AM +++ ++P Sbjct: 250 KLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAIP 304 >B1DMI6.1 B1DMI6_9BACL Integrase family protein Length = 249 Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 135/248 (54%), Positives = 184/248 (74%), Gaps = 1/248 (0%) Query: 54 LHIISYLTSVRERGVSDATRNRKHASVNCLFKALMELELLAANPAAGIKKSKTEKNREPV 113 +H+IS+L S ++RG D RNR +++ + AL++ E+ NPA +KKSKTEKN++PV Sbjct: 1 MHVISFLIS-KQRGAGDRARNRTLSAIRSFYTALIDFEMATRNPAMEVKKSKTEKNKKPV 59 Query: 114 YLEEHELQRFLSAVEGKYRSRNLAVFLLMSYMGLRVGEVHTLNLSDYNAERLTLRVFGKG 173 YLEE EL LS +EG+YR+RN+A+FLLMSY GLRVGEVH LN SD+N R T+ VFGKG Sbjct: 60 YLEEDELASSLSCIEGRYRARNVAIFLLMSYCGLRVGEVHRLNRSDFNPVRGTIEVFGKG 119 Query: 174 RKWRNIPVPAELAPFLEQALSERLEPWRSKEEAMFISQKGRRLSIRAIQGIAADTFGRFQ 233 RKW IPVP ELA L + +R+ P++ +E+A F+SQKGRRLSIR IQ IA TF F+ Sbjct: 120 RKWNEIPVPEELAAVLSEVAQDRITPYKEQEDAFFVSQKGRRLSIRQIQKIAGQTFEAFK 179 Query: 234 AEVPAARRRPYSSHKLRHSFATMLLRKGADLRTVQELLGHSSIQTTTVYTHITNREKEEA 293 + P A + S HKLRH+FAT+LL+ G D+R V+ELLGH+SI+TT +YTH+ + +K+EA Sbjct: 180 SINPHAANKKLSCHKLRHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKEA 239 Query: 294 MARLQISM 301 MA +++ + Sbjct: 240 MATIRLPV 247 >B8CX42.1 B8CX42_HALOH Phage integrase family protein Length = 310 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 164/289 (56%), Gaps = 18/289 (6%) Query: 23 GFTPYTQKSYLADVREF-------LGSLNGKSLENVKKLHIISYL-TSVRERGVSDATRN 74 G++P T K Y D+ F +G N SL+ + K HI +L ++ + TRN Sbjct: 23 GYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINKYHIAEFLGDTILVHDNAPTTRN 82 Query: 75 RKHASVNCLFKALMELELLAANPAAGIKKSKTEKNREPVYLEEHELQRFLSAVE---GKY 131 RK S+ FK L++ E + NPAA I+ SKTE EP+Y++ ++ Q+++ ++ G Sbjct: 83 RKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKYIETIKKHGGVN 142 Query: 132 RSRNLAVFLLMSYMGLRVGEVHTLNLSDYNAERLTLRVFGKGRKWRNIPVPAELAPFLEQ 191 R+LA+ L Y GLRV E+ L+L D + + +++ +GKG+K R +P+ ++ ++ Sbjct: 143 LKRDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQSIKFYGKGKKERYVPLHPDVIMSIKN 202 Query: 192 ALSERLEPWRSKEEA---MFISQKGRRLSIRAIQGIAADTFGRFQAEVPAARRRPYSSHK 248 ER E E+A +F+S+ G+R+S+R IQ + + + A + P HK Sbjct: 203 YFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQ-MMVKKYAKLAGVKNADKITP---HK 258 Query: 249 LRHSFATMLLRKGADLRTVQELLGHSSIQTTTVYTHITNREKEEAMARL 297 LRH+FA++L K DL+ +Q+LLGH+ I TT +YTH +++++A+ L Sbjct: 259 LRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAIKEL 307 >B3PEI6.1 B3PEI6_CELJU Tyrosine recombinase XerC Length = 313 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 155/291 (53%), Gaps = 14/291 (4%) Query: 1 MNDSEPDYEEELEAFVIWMK-DAGFTPYTQKSYLADVREFLGSLNGKSLENVKKLH---I 56 MN++ + E L AF +M+ + F+P+TQ +Y D+ +F ++ + ++ + Sbjct: 1 MNETPLPFAEPLAAFYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAV 60 Query: 57 ISYLTSVRERGVSDATRNRKHASVNCLFKALMELELLAANPAAGIKKSKTEKNREPVYLE 116 + S+ +G++ + R +S+ F+ + ++ NPA GI KT K + P L+ Sbjct: 61 RMAVASLHRQGLAGKSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPK-KLPKTLD 119 Query: 117 EHELQRFLSAVEGK--YRSRNLAVFLLMSYMGLRVGEVHTLNLSDYNAERLTLRVFGKGR 174 + +F+ AVEG R+ A+ L+ GLR+ EV +LNL D + + V GKG Sbjct: 120 VDQTAQFV-AVEGDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGS 178 Query: 175 KWRNIPVPAELAPFLEQALSERLEPWRSKEEAMFISQKGRRLSIRAIQGIAADTFGRFQA 234 K R +PV + L+ LS+R + + E A+FI+Q+G+R+S RA+Q Q Sbjct: 179 KTRTLPVGSVAIAALKDWLSQREQYAPASEPALFITQRGKRISHRAVQ------LRLQQL 232 Query: 235 EVPAARRRPYSSHKLRHSFATMLLRKGADLRTVQELLGHSSIQTTTVYTHI 285 V P H LRHSFA+ +L DLR VQELLGH++I TT +YTH+ Sbjct: 233 SVQQGMDNPVHPHMLRHSFASHMLESSGDLRLVQELLGHANISTTQIYTHL 283 >C4L240.1 C4L240_EXISA Integrase family protein Length = 337 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 124/238 (52%), Gaps = 20/238 (8%) Query: 74 NRKHASVNCLFKALMELELLAANPAAGIKKSKTEKNREPVYLEEHELQRFLSAVEGKY-- 131 NRK +++ LF L+E NP +++ K K R PVYL E E F + V Sbjct: 107 NRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGK-RNPVYLTESEWLDFSTLVRSNVGM 165 Query: 132 -----------RSRNLAVFLLMSYMGLRVGEVHTLNLSDYNAERLTLRVFGKGRKWRNIP 180 R+R+ + L+ G+RV E+ LN SD N E T+RV GKG K R IP Sbjct: 166 TNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDINLETGTIRVIGKGDKERLIP 225 Query: 181 VPAELAPFLEQALSERLEPWRSKEEAMFISQKGRRLSIRAIQGIAADTFGRFQAEVPAAR 240 + L P L + S E A+F ++KG+R+++R +Q + R + +P Sbjct: 226 IAGPLLPLLSEYRHT------SSEGAVFQNEKGQRIAVRTVQHMLKGHIDRLKPYLPFLS 279 Query: 241 RRPYSSHKLRHSFATMLLRKGADLRTVQELLGHSSIQTTTVYTHITNREKEEAMARLQ 298 + + HKLRH+FA+ L G D+ T+Q+LLGH S+ TT VY HI + K+ A++ LQ Sbjct: 280 HKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGDERKKHAISGLQ 337 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,664,340,484 Number of extensions: 64294658 Number of successful extensions: 189407 Number of sequences better than 1.0e-05: 5077 Number of HSP's gapped: 184762 Number of HSP's successfully gapped: 5082 Length of query: 303 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 168 Effective length of database: 1,788,859,178 Effective search space: 300528341904 Effective search space used: 300528341904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)