BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0522.0002.p
         (140 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9UXJ7.1 Q9UXJ7_SULSO Putative uncharacterized protein ORF-c39_022     61   4e-08

>Q9UXJ7.1 Q9UXJ7_SULSO Putative uncharacterized protein ORF-c39_022
          Length = 168

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 1   VSSDHSIA----------SSMFLSLHVPSFFPSGSYIFSFAPRLTSSGKIINEGASLISS 50
           ++S HS+A          SS+ L++        GSY  + AP  T S  I N   SL+SS
Sbjct: 42  LNSSHSVAIITPSDLFTHSSLLLTISTNDVLALGSYAMTLAPISTKSLAIFNATLSLVSS 101

Query: 51  VLGLKVIPSTAIVLPLTSSIALTILSTILFFCLSFAWTVVSIREIGSPTSWAIRANAIVS 110
           VLGL  IP   IVLP +S    +I+ T L    S  +   S     SP S A  A A VS
Sbjct: 102 VLGLNAIPKIQIVLPFSSPNNSSIIFTALLGLSSLTFIAASTIFNSSPNSLAKDAKARVS 161

Query: 111 LGKQLPP 117
           LGK  PP
Sbjct: 162 LGKHEPP 168


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 804,359,590
Number of extensions: 29549891
Number of successful extensions: 85193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 85193
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 3,060,696,203
Length adjustment: 104
Effective length of query: 36
Effective length of database: 2,080,910,643
Effective search space: 74912783148
Effective search space used: 74912783148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)