BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0521.0005.p (473 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1BBE4.1 B1BBE4_CLOBO Sensor protein EC=2.7.13.3 255 8e-66 A0PXH2.1 A0PXH2_CLONN Sensor protein EC=2.7.13.3 232 7e-59 C3BKB1.1 C3BKB1_9BACI Putative uncharacterized protein 222 6e-56 C3ALG4.1 C3ALG4_BACMY Putative uncharacterized protein 221 1e-55 C3IWQ4.1 C3IWQ4_BACTU Putative uncharacterized protein 210 3e-52 >B1BBE4.1 B1BBE4_CLOBO Sensor protein EC=2.7.13.3 Length = 481 Score = 255 bits (651), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 240/405 (59%), Gaps = 10/405 (2%) Query: 74 SAQLLHSGGWLELLDSNKQVIRVVGDKEDQIRSYDEDRLFLGLE-----NRKDQPYYYSI 128 + Q++ GGW+E+L++NK V+ ++G K+D+ Y ED L L +E ++ D Y YSI Sbjct: 73 AKQIMSIGGWVEILNNNKDVVHIIGKKKDKKMHYSEDELLLYVEQNLDIDKIDNSYLYSI 132 Query: 129 AKIEGDGQAAWLLLKIPRDVIKVSIDNE-LLVSYLNHSV---FFYVFLVSGLILLLIFVY 184 A + + + ++K+P D I++ ID + + Y+N +V + ++ L++L+I +Y Sbjct: 133 APFHFNNKKYYCVVKVPNDTIRIDIDKKNSMEKYINKAVSKILKGILCITLLLVLVILIY 192 Query: 185 SYWVTRRIKKPLRVLNLGLKQMMEGHYSTRIALYAETEFLRIGESFNYMADVIXXXXXXX 244 S WV+RRI +PLR + G+ +M EG Y RI+ E EF I ++FN+MA+ I Sbjct: 193 SSWVSRRIVRPLREILKGISKMTEGDYGARISFKRENEFSEIKDAFNFMAEKIQQGDIER 252 Query: 245 XXXXXXXQRLMVDLSHDLKTPITSIQGYAQALMEGRGTDPERQTKYLNYIYSKSVQVTKL 304 Q+L D+SHDLKTPITSIQGY++AL +G D ++ KY+N IY+KS ++T L Sbjct: 253 KKNEQFKQQLFTDISHDLKTPITSIQGYSKALYDGVVQDDVKKQKYINIIYNKSRRLTSL 312 Query: 305 IQHMLELLKLDSPDFILRTERLELGDHLREIVADTYGEIEQKDFQLQLQVPEEEMYAHYD 364 I+++ EL KL + ++ + E ++ + LRE+V D Y EIE+K+F+ + +PE+ + D Sbjct: 313 IENVHELAKLGNGNYFMCMENTDMCEFLREVVTDFYFEIEEKNFECDIDIPEQPIMHKID 372 Query: 365 PELFASVVNNLISNALAYNPNGTHLRVSVFPEDTEIRIEIADNGVGIPKELWSTIFDPFV 424 F V+ N++SN++ YNP T +V + D I I IAD+G+GI E+ TIF+ F Sbjct: 373 RNEFTRVIANIMSNSIKYNPCKTRFKVGLQKNDFSISIIIADDGIGITDEIKETIFEAFT 432 Query: 425 RGDEARXXXXXXXXXXXXIAKKNAEKMGGSLELASREGEPTVFTI 469 RGD +R IA+K EK G + L S + T+F I Sbjct: 433 RGDLSR-VSTGGTGIGLSIARKIVEKHNGCILLKSNDEYKTIFEI 476 >A0PXH2.1 A0PXH2_CLONN Sensor protein EC=2.7.13.3 Length = 481 Score = 232 bits (591), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 147/405 (36%), Positives = 228/405 (56%), Gaps = 10/405 (2%) Query: 74 SAQLLHSGGWLELLDSNKQVIRVVGDKEDQIRSYDEDRLFLGLE-----NRKDQPYYYSI 128 + Q++ GGW+E+LDSNK+VI ++G K+D+ Y ED L L +E N+ + Y SI Sbjct: 73 AKQVISIGGWVEILDSNKKVIHIIGKKKDKKMVYSEDELLLAVERNLDINKTNNSYLCSI 132 Query: 129 AKIEGDGQAAWLLLKIPRDVIKVSIDNELLVSYLNHSVFFYV----FLVSGLILLLIFVY 184 +G+ + ++K+P D +++ ID + + V V + L++LLI +Y Sbjct: 133 EPFYSNGRKYYCVVKVPNDTMQIDIDKKKAMEKYIEKVVTKVSKGVLYIIILVVLLILIY 192 Query: 185 SYWVTRRIKKPLRVLNLGLKQMMEGHYSTRIALYAETEFLRIGESFNYMADVIXXXXXXX 244 S WV+ RI KPL+ + +G+ +M EG Y RI E EF I ++FN+MA+ I Sbjct: 193 SAWVSNRIIKPLKEILMGISKMTEGDYEARIKFKRENEFSEIKDAFNFMAEKIQQGDIER 252 Query: 245 XXXXXXXQRLMVDLSHDLKTPITSIQGYAQALMEGRGTDPERQTKYLNYIYSKSVQVTKL 304 Q+L D+SHDLKTPITSIQGY++AL +G D ++ KY+ IY KS ++T L Sbjct: 253 KRNEQFKQQLFTDISHDLKTPITSIQGYSKALYDGVVEDDVKKQKYIKIIYDKSRRLTSL 312 Query: 305 IQHMLELLKLDSPDFILRTERLELGDHLREIVADTYGEIEQKDFQLQLQVPEEEMYAHYD 364 ++++ EL KL + + + E ++ + LREI+A Y EIE+K F + +PE+ + D Sbjct: 313 VENVHELAKLGNESYSMSMEYTDICELLREILAGFYFEIEEKQFDCHIDIPEQSIMHKVD 372 Query: 365 PELFASVVNNLISNALAYNPNGTHLRVSVFPEDTEIRIEIADNGVGIPKELWSTIFDPFV 424 F + N+ISN + YNP T +++ + ++I I IAD+G+GI EL TIF+ F Sbjct: 373 KSEFTRAIANIISNCMKYNPLKTKIKIQLKKNVSDISIIIADDGIGISNELKQTIFEAFT 432 Query: 425 RGDEARXXXXXXXXXXXXIAKKNAEKMGGSLELASREGEPTVFTI 469 RGD +R IAKK EK G + L + T+F + Sbjct: 433 RGDLSR-LSTGGTGLGLSIAKKIVEKHNGWIVLKGDDNYKTIFEV 476 >C3BKB1.1 C3BKB1_9BACI Putative uncharacterized protein Length = 432 Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 140/401 (34%), Positives = 229/401 (57%), Gaps = 15/401 (3%) Query: 82 GWLELLDSNKQVIRVVGDKEDQIRSYDEDRLFLGLENRKDQPYYYSIAKIEG-DGQAAWL 140 GW+E+LD N QVI V G K+D+ +Y E L ++++ PYY S+A + DG+ A+ Sbjct: 28 GWVEILDENLQVIYVKGKKQDKSSAYTEKELNTLFYDQEENPYYSSLAPFKTKDGKTAYC 87 Query: 141 LLKIPRDVIKVSIDNELLVSYL--NHSVFFYVFLVSGLILLL------IFVYSYWVTRRI 192 L+KIP+ +K E L++ +H F L+ +L L +++YS W+ +I Sbjct: 88 LVKIPKTYVK----KEFLITSAAKDHITAFTKLLLQTFVLFLLLFGLNVYIYSRWMAMKI 143 Query: 193 KKPLRVLNLGLKQMMEGHYSTRIALYAETEFLRIGESFNYMADVIXXXXXXXXXXXXXXQ 252 PLR + G++ + G+Y R+ + E ++I FN MA+ + Q Sbjct: 144 TNPLRSIADGIRNITNGYYYKRLRFKSNYELMQIQNDFNLMAEKLEKTEIEKKQLEKSKQ 203 Query: 253 RLMVDLSHDLKTPITSIQGYAQALMEGRGTDPERQTKYLNYIYSKSVQVTKLIQHMLELL 312 R++V +SHDLKTPIT+IQ Y +AL G + R+ + L+ I++K+ VT+LI+ + EL Sbjct: 204 RMLVHISHDLKTPITTIQSYVEALQLGLIKEEARKQQALHTIHTKARLVTELIEDVFELS 263 Query: 313 KLDSPDFILRTERLELGDHLREIVADTYGEIEQKDFQLQLQVPEEEMYAHYDPELFASVV 372 KL+SPD+ T+ L++ + +REI A+ Y E+K F Q ++P +++Y ++ L V Sbjct: 264 KLESPDYPFPTDTLDICEFIREIAAEYYSLFEEKQFNFQFEIPFQKIYVLFNYTLLYRAV 323 Query: 373 NNLISNALAYNPNGTHLRVSVFPEDTEIRIEIADNGVGIPKELWSTIFDPFVRGDEARXX 432 +N++SNAL YNP GT++ +S+ + +I I I D+G+GIP + +F+ F RGD++R Sbjct: 324 SNVLSNALKYNPEGTNILISLIEDTQKIHINIIDDGIGIPYAVKEKVFEAFFRGDQSR-K 382 Query: 433 XXXXXXXXXXIAKKNAEKMGGSLELASREGEPTVFTIRVPK 473 I+K EK GG + L + EG+ T F I +PK Sbjct: 383 SDGGTGLGLTISKHIVEKHGGQIYLHTDEGK-TRFQITLPK 422 >C3ALG4.1 C3ALG4_BACMY Putative uncharacterized protein Length = 432 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/399 (34%), Positives = 227/399 (56%), Gaps = 11/399 (2%) Query: 82 GWLELLDSNKQVIRVVGDKEDQIRSYDEDRLFLGLENRKDQPYYYSIAKIEG-DGQAAWL 140 GW+E+LD N QVI V G K+D+ +Y E L ++++ PYY S+A + DG+ A+ Sbjct: 28 GWVEILDENLQVIYVKGKKQDKSSAYTEKELNTLFYDQEENPYYSSLAPFKTKDGKTAYC 87 Query: 141 LLKIPRDVIKVSIDNELLVSYLNHSVFFYVFLVSGLILLL------IFVYSYWVTRRIKK 194 L+KIP+ +K + + +H F L+ +L L +++YS W+ +I Sbjct: 88 LVKIPKTYVKKEFS--ITSAAKDHITAFTKLLLQTFVLFLLLFGLNVYIYSRWMAMKITN 145 Query: 195 PLRVLNLGLKQMMEGHYSTRIALYAETEFLRIGESFNYMADVIXXXXXXXXXXXXXXQRL 254 PLR + G++ + G+Y R+ + E ++I FN MA+ + QR+ Sbjct: 146 PLRSIADGIRNITNGYYYKRLRFKSNYELMQIQNDFNLMAEKLEKTEIEKKQLEKSKQRM 205 Query: 255 MVDLSHDLKTPITSIQGYAQALMEGRGTDPERQTKYLNYIYSKSVQVTKLIQHMLELLKL 314 +V +SHDLKTPIT+IQ Y +AL G + R+ + L+ I++K+ VT+LI+ + EL KL Sbjct: 206 LVHISHDLKTPITTIQSYVEALQLGLIKEEARKQQALHTIHTKARLVTELIEDVFELSKL 265 Query: 315 DSPDFILRTERLELGDHLREIVADTYGEIEQKDFQLQLQVPEEEMYAHYDPELFASVVNN 374 +SPD+ T+ L++ + +REI A+ Y E+K F Q ++P +++Y ++ L V+N Sbjct: 266 ESPDYPFPTDTLDICEFIREIAAEYYSLFEEKQFNFQFEIPFQKIYVLFNYTLLYRAVSN 325 Query: 375 LISNALAYNPNGTHLRVSVFPEDTEIRIEIADNGVGIPKELWSTIFDPFVRGDEARXXXX 434 ++SNAL YNP GT++ +S+ + +I I I D+G+GIP + +F+ F RGD++R Sbjct: 326 VLSNALKYNPEGTNILISLIEDTQKIHINIIDDGIGIPYAVKEKVFEAFFRGDQSR-KSD 384 Query: 435 XXXXXXXXIAKKNAEKMGGSLELASREGEPTVFTIRVPK 473 I+K EK GG + L + EG+ T F I +PK Sbjct: 385 GGTGLGLTISKHIVEKHGGQIYLHTDEGK-TRFQITLPK 422 >C3IWQ4.1 C3IWQ4_BACTU Putative uncharacterized protein Length = 434 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 142/422 (33%), Positives = 235/422 (55%), Gaps = 11/422 (2%) Query: 59 VEAGQYLEELGEGPRSAQLLHSGGWLELLDSNKQVIRVVGDKEDQIRSYDEDRLFLGLEN 118 ++A + + E E S ++ GGW+E+L+ N QVI G+K+DQ+ SY + R F L Sbjct: 14 LKASEVVRENFETINSESIVSFGGWVEILNENLQVIYTKGEKKDQLLSYSQ-REFATLFF 72 Query: 119 RKDQ-PYYYSIAK-IEGDGQAAWLLLKIPRDVIK----VSIDNELLVSYLNHSVFF-YVF 171 D+ PYY S+A + G+ + L+K+P+ IK S NE V Y+ + +FF +F Sbjct: 73 DNDKLPYYSSVATFVTKKGETLYCLVKVPKKAIKYEYTFSDKNEEYV-YVFYKIFFSTIF 131 Query: 172 LVSGLILLLIFVYSYWVTRRIKKPLRVLNLGLKQMMEGHYSTRIALYAETEFLRIGESFN 231 L + ++++S + R+I +PL L G +++ G Y R+ E ++I SFN Sbjct: 132 LFFVFFSMNVYIFSRQIARKITRPLDKLATGFEEIASGKYDKRLNYETYFELMQIQHSFN 191 Query: 232 YMADVIXXXXXXXXXXXXXXQRLMVDLSHDLKTPITSIQGYAQALMEGRGTDPERQTKYL 291 M++ + Q+++VDLSHDL+TPIT++QGY +AL G T+ + + L Sbjct: 192 VMSEKLDKIEKEKKRLEETKQKMLVDLSHDLRTPITTVQGYVEALQLGIITEKGERERTL 251 Query: 292 NYIYSKSVQVTKLIQHMLELLKLDSPDFILRTERLELGDHLREIVADTYGEIEQKDFQLQ 351 N IY+K + L + + EL KL+ D+ ++ + +RE++A+ Y + K LQ Sbjct: 252 NVIYNKIRIIAVLTEDIFELSKLEHSDYPFEVHPTDVSEFIRELLAEYYDLFQAKRLILQ 311 Query: 352 LQVPEEEMYAHYDPELFASVVNNLISNALAYNPNGTHLRVSVFPEDTEIRIEIADNGVGI 411 ++P +E+ A + L ++N+ISNAL YN GT + +S+ +++++ I I DNG+GI Sbjct: 312 YEIPPKEVIAPINNRLLYRAISNIISNALQYNTAGTTVFISLIEDESKVYINIIDNGIGI 371 Query: 412 PKELWSTIFDPFVRGDEARXXXXXXXXXXXXIAKKNAEKMGGSLELASREGEPTVFTIRV 471 P+++ +IFD FVR D++R IAK EK GGS+ L S + + T F I + Sbjct: 372 PEDMKQSIFDAFVRVDDSR-ENNGGSGLGLTIAKHIVEKHGGSINLDSTK-KKTHFCISL 429 Query: 472 PK 473 PK Sbjct: 430 PK 431 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,550,150,884 Number of extensions: 100838854 Number of successful extensions: 353305 Number of sequences better than 1.0e-05: 21180 Number of HSP's gapped: 330297 Number of HSP's successfully gapped: 21219 Length of query: 473 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 333 Effective length of database: 1,741,754,103 Effective search space: 580004116299 Effective search space used: 580004116299 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)