BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0521.0004.p (368 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDW8.1 B3KDW8_9BACI Putative uncharacterized protein 420 e-115 B3KGD8.1 B3KGD8_9BACI Putative uncharacterized protein 308 5e-82 A6CHR3.1 A6CHR3_9BACI Putative uncharacterized protein 209 5e-52 B1DHE2.1 B1DHE2_9BACL Putative uncharacterized protein 201 1e-49 A7GQ61.1 A7GQ61_BACCN Putative uncharacterized protein 196 2e-48 >B3KDW8.1 B3KDW8_9BACI Putative uncharacterized protein Length = 359 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/358 (58%), Positives = 264/358 (73%) Query: 1 MAKLNLFIRICIAVLLVLGIIYLGTQVKFIFTPVLSLFRVVIVPLMLAVFFFYLLRPLIN 60 M K+N F ++C+AV+LVL IIYLG+ V FIF PVLS F +++VPLML+ FF+YLLRPL++ Sbjct: 1 MLKMNKFFKLCLAVILVLTIIYLGSLVDFIFRPVLSFFSIILVPLMLSGFFYYLLRPLVD 60 Query: 61 WLESRKLNRTXXXXXXXXXXXXXXXXFSVGVWPSLKSQLVNLGNNMPNVFNALGEQLTKL 120 LE RKLNR+ F +GVWPSL+ Q+V L N P +F LGEQL +L Sbjct: 61 LLEKRKLNRSLAILLLYVVFAGILTGFILGVWPSLRDQIVALVQNAPALFAKLGEQLQEL 120 Query: 121 EDSKLLSSLIPADMNPAGQLMNYLNKGFSLLSNSMSELFSFVSNFAVVLFTFPILLFYML 180 E++ + P + NP QL +YLN+GF+ L+N + LFSFVSNFA+VLFTFPILL+YML Sbjct: 121 ENNGFFQDIFPENANPLTQLTDYLNQGFTFLTNYIMNLFSFVSNFAIVLFTFPILLYYML 180 Query: 181 KEGGKFGVKVVSFFPKRFHKEGEGVVADIDEAMSNFIVGRVLVNLALGVLMYLGFLLIGL 240 KEGGKFG VVSF P RF EG V+ +I+ A+ FIVGRVLVNLALGVLMY+GFL+IGL Sbjct: 181 KEGGKFGKMVVSFLPDRFKGEGASVLDEINNALKGFIVGRVLVNLALGVLMYIGFLIIGL 240 Query: 241 PYALLLTVVAVLMNFIPFIGAILSTVPIFIIGLMESPSTAIWSIVVVLVAQQIQDNLVAP 300 PYALLLTVVAV+ NFIPFIGAILS +PI IIG ++SP TAIWS+VV+L AQQIQDNL+ P Sbjct: 241 PYALLLTVVAVIANFIPFIGAILSAIPIVIIGFIQSPGTAIWSLVVILAAQQIQDNLIGP 300 Query: 301 YIFGKSLDIHPLTTIILVLAXXXXXXXXXXXXXXPVYMMLKIITVKLHQLYMRQRWPE 358 YIFGK L IHP+T IILVL P+YM++KII +++QL+ +++W + Sbjct: 301 YIFGKQLAIHPITIIILVLVGQDLGGIIGILLIVPIYMIIKIIVTRVYQLFFKEKWKK 358 >B3KGD8.1 B3KGD8_9BACI Putative uncharacterized protein Length = 358 Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 151/349 (43%), Positives = 244/349 (69%) Query: 7 FIRICIAVLLVLGIIYLGTQVKFIFTPVLSLFRVVIVPLMLAVFFFYLLRPLINWLESRK 66 + R C ++ +L IIYLG ++ F+F P++S+F ++IVP+ +A FF+YLLRP++++LE RK Sbjct: 6 YFRTCFGIIALLLIIYLGAEISFLFRPIVSMFNMLIVPVAMAGFFYYLLRPIVDYLERRK 65 Query: 67 LNRTXXXXXXXXXXXXXXXXFSVGVWPSLKSQLVNLGNNMPNVFNALGEQLTKLEDSKLL 126 + R+ F + VWP+L+ Q+ N +N P + + EQ+ +L+ ++ Sbjct: 66 IKRSIGVLMLYFVFAGLCAIFGIVVWPTLREQIENFISNAPFLVEGVEEQIDQLQQNQFW 125 Query: 127 SSLIPADMNPAGQLMNYLNKGFSLLSNSMSELFSFVSNFAVVLFTFPILLFYMLKEGGKF 186 S IP + + L Y+N+ + +SNS++ L S VS V++ T PI+L+YMLKEG K Sbjct: 126 SRYIPTESELSTSLTEYMNRIITWISNSINNLISVVSGVVVIIATIPIILYYMLKEGSKL 185 Query: 187 GVKVVSFFPKRFHKEGEGVVADIDEAMSNFIVGRVLVNLALGVLMYLGFLLIGLPYALLL 246 +++S P+R+ ++G+ V+ +ID A+SNFI+G+V++NL L V++Y+GFL+IGLPY+LLL Sbjct: 186 PPRLLSVLPRRYRRDGQEVLGEIDTALSNFIIGKVILNLILSVMIYIGFLIIGLPYSLLL 245 Query: 247 TVVAVLMNFIPFIGAILSTVPIFIIGLMESPSTAIWSIVVVLVAQQIQDNLVAPYIFGKS 306 TV++ +NFIP+IGA+L+TVP+ IIG +ESPS AIWS+VV+++AQQIQDN++ P I+GK Sbjct: 246 TVISFFLNFIPYIGALLATVPVVIIGFIESPSIAIWSVVVIVIAQQIQDNILTPVIYGKQ 305 Query: 307 LDIHPLTTIILVLAXXXXXXXXXXXXXXPVYMMLKIITVKLHQLYMRQR 355 LDIHPLTT++L+L P YM++KII V++++L++ ++ Sbjct: 306 LDIHPLTTVVLILVGGDFFGLLGILLAIPAYMIIKIIAVRIYELFLAEK 354 >A6CHR3.1 A6CHR3_9BACI Putative uncharacterized protein Length = 359 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 109/327 (33%), Positives = 192/327 (58%), Gaps = 5/327 (1%) Query: 27 VKFIFTPVLSLFRVVIVPLMLAVFFFYLLRPLINWLESRKLNRTXXXXXXXXXXXXXXXX 86 V FIF P+ L + P++L +YL RPL+N L ++K+ R Sbjct: 26 VDFIFKPLTVLVTALFGPIVLGGILYYLFRPLVNLL-AKKMPRAVAILLLYLAVIGLITG 84 Query: 87 FSVGVWPSLKSQLVNLGNNMPNVFNALGEQLTKLEDSKLLSSLIPADM----NPAGQLMN 142 P L+ Q+ +L N P + + L L+ S+ +S D + +L + Sbjct: 85 VVFYAGPILQRQISSLIENTPQLIEKFRQTLLNLQQSEWVSRFQNGDRFSLEDITNRLTD 144 Query: 143 YLNKGFSLLSNSMSELFSFVSNFAVVLFTFPILLFYMLKEGGKFGVKVVSFFPKRFHKEG 202 YLN+ S L +++ + S ++N V++ P +L+YMLK+G K K++ PK+ +EG Sbjct: 145 YLNEAASTLGSNLMNILSTITNIIVLIILIPFVLYYMLKDGNKLSGKILKLVPKKHEEEG 204 Query: 203 EGVVADIDEAMSNFIVGRVLVNLALGVLMYLGFLLIGLPYALLLTVVAVLMNFIPFIGAI 262 + V++D+D+A+S++I G+V+V+ +GVL+Y+G+L+IGL Y+L+++++ +L N IPFIG + Sbjct: 205 KKVLSDMDDALSSYIQGQVIVSFCVGVLVYIGYLIIGLDYSLVISILTMLTNVIPFIGPL 264 Query: 263 LSTVPIFIIGLMESPSTAIWSIVVVLVAQQIQDNLVAPYIFGKSLDIHPLTTIILVLAXX 322 +S++P I+ ++ P A+W IVV+L+ QQI+ NL++P + G+ LDIHPLT I+L++A Sbjct: 265 ISSIPAIIVAFLQEPIMALWVIVVILIVQQIEGNLISPQVMGRKLDIHPLTIILLLVAAG 324 Query: 323 XXXXXXXXXXXXPVYMMLKIITVKLHQ 349 P Y +LK+I + +++ Sbjct: 325 KFAGFLGLLLAVPAYAVLKVIFIHVYR 351 >B1DHE2.1 B1DHE2_9BACL Putative uncharacterized protein Length = 371 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/359 (31%), Positives = 194/359 (54%), Gaps = 5/359 (1%) Query: 9 RICIAVLLVLGIIYLGTQVKFIFTPVLSLFRVVIVPLMLAVFFFYLLRPLINWLESRKLN 68 RI +++VL I YL ++V F+F P+ + + VPL+++ F+YL RP + L S KL Sbjct: 8 RIGYGIIVVLLIAYLASKVDFVFNPIGKVLAALFVPLLISGMFYYLFRPFVRLL-SMKLP 66 Query: 69 RTXXXXXXXXXXXXXXXXFSVGVWPSLKSQLVNLGNNMPNVFNALGEQLTKLEDSKLLSS 128 + F +WP ++ Q +NL NN P + ++ L ++ + L Sbjct: 67 KVVAILLVYIGAIGICYLFFWMIWPPIRDQSINLVNNFPQIVASVQTWLESMQQHEWLKE 126 Query: 129 LIPADMNPAGQLMNYLNKGFSLLSNSM----SELFSFVSNFAVVLFTFPILLFYMLKEGG 184 + D L N L L NS+ +F+ + NF +L P +++Y+L EG Sbjct: 127 IGQKDALSTENLTNKLTGSLDELLNSVIGSVRGIFNVIMNFFFLLGLVPFMIYYLLSEGD 186 Query: 185 KFGVKVVSFFPKRFHKEGEGVVADIDEAMSNFIVGRVLVNLALGVLMYLGFLLIGLPYAL 244 K ++ P+RFHKE G + +ID ++ +FI+ +VL +L +GVL ++G+LLI +PY L Sbjct: 187 KLPGHILRMLPERFHKEASGALKEIDASIGSFILSKVLTSLLIGVLTFVGYLLIDMPYPL 246 Query: 245 LLTVVAVLMNFIPFIGAILSTVPIFIIGLMESPSTAIWSIVVVLVAQQIQDNLVAPYIFG 304 LL ++A + NFIP+IG +++ +P ++ L SP T + VV++V+ QI+ NL+ P I G Sbjct: 247 LLGLIAAITNFIPYIGPLIAFIPTAVVALTVSPMTVLLVGVVLIVSNQIEANLIGPRIIG 306 Query: 305 KSLDIHPLTTIILVLAXXXXXXXXXXXXXXPVYMMLKIITVKLHQLYMRQRWPEEPQLS 363 K +++HP T ++LV+ PVY ++KII +++ R P + L+ Sbjct: 307 KQMNVHPFTVMLLVIGASSIIGAFGMIIVVPVYAIIKIIATRVYAFRKHNRIPPKDPLA 365 >A7GQ61.1 A7GQ61_BACCN Putative uncharacterized protein Length = 361 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 107/349 (30%), Positives = 185/349 (53%), Gaps = 4/349 (1%) Query: 11 CIAVLLVLGIIYLGTQVKFIFTPVLSLFRVVIVPLMLAVFFFYLLRPLINWLESRKLNRT 70 + VL+V+GII++ T++ F+F P+ + P+++A+F +++ P++ +LE++K+ R Sbjct: 9 TLEVLMVVGIIFICTKISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLENQKVPRN 68 Query: 71 XXXXXXXXXXXXXXXXFSVGVWPSLKSQLVNLGNNMPNVFNALGEQLTKLEDSKLLSSLI 130 V P++ QL+ L N+PN + +L +L L Sbjct: 69 LAVLLLYVFIITLTAVAIGVVVPTVSQQLMELVKNLPNYIKEGKIYIQELSHHRLFEWLT 128 Query: 131 PADM----NPAGQLMNYLNKGFSLLSNSMSELFSFVSNFAVVLFTFPILLFYMLKEGGKF 186 D + YL + +++S + LF ++N A+V+FT P +LFYM K+G F Sbjct: 129 TQDYISIETIEKNAVEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAF 188 Query: 187 GVKVVSFFPKRFHKEGEGVVADIDEAMSNFIVGRVLVNLALGVLMYLGFLLIGLPYALLL 246 K VSF P+ + +EG ++ + +E +S +I G+ LV L +G ++G+ +IGLPYA +L Sbjct: 189 PRKAVSFLPESYREEGLRIIKETNETLSAYIQGQALVCLFVGAFTFIGYFIIGLPYAFIL 248 Query: 247 TVVAVLMNFIPFIGAILSTVPIFIIGLMESPSTAIWSIVVVLVAQQIQDNLVAPYIFGKS 306 ++A N IP +G + P I+GL SP A+W I+VV + QQ + N+++P I Sbjct: 249 GIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQAVWVILVVTIVQQFESNIISPRIMSSK 308 Query: 307 LDIHPLTTIILVLAXXXXXXXXXXXXXXPVYMMLKIITVKLHQLYMRQR 355 L+IHPLT I+L+L P Y + K + L +L+ +R Sbjct: 309 LNIHPLTVIVLILGVGNFAGIIGMILAVPAYAVTKTVVSNLVRLFKTKR 357 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.145 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,825,597,097 Number of extensions: 68131623 Number of successful extensions: 349480 Number of sequences better than 1.0e-05: 2711 Number of HSP's gapped: 347136 Number of HSP's successfully gapped: 2711 Length of query: 368 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 231 Effective length of database: 1,770,017,148 Effective search space: 408873961188 Effective search space used: 408873961188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)