BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0521.0003.p
         (115 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DHP3.1 B1DHP3_9BACL Putative uncharacterized protein                106   8e-22
B3KJ08.1 B3KJ08_9BACI Putative uncharacterized protein                101   3e-20
Q3AAL8.1 Q3AAL8_CARHZ Putative uncharacterized protein                 91   3e-17
B0K9D8.1 B0K9D8_THEP3 Putative uncharacterized protein                 89   1e-16
B0K0U5.1 B0K0U5_THEPX Putative uncharacterized protein                 89   1e-16

>B1DHP3.1 B1DHP3_9BACL Putative uncharacterized protein
          Length = 127

 Score =  106 bits (264), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 72/100 (72%), Gaps = 1/100 (1%)

Query: 1   MEQDSHKGLVNISDRVISAIIGYAVMDTPGIAGMSGSTVTGNLAKRLGGKISKKGLSVEV 60
           M +D   G++ ISD V++ I G A ++TPGIAGMSG    G LAKRL GK  +KG+SVEV
Sbjct: 1   MNEDLQTGIIRISDDVVATIAGLAALETPGIAGMSGGISEG-LAKRLSGKNVQKGVSVEV 59

Query: 61  TEEDVAIHLQVIINYGYAIQEVCKSVQQNVRSAVENMLGL 100
            + + AI L+VI++YG  IQEVC+ +Q NVR +VENM GL
Sbjct: 60  GQLEAAIDLRVIVHYGIPIQEVCRQLQLNVRESVENMTGL 99


>B3KJ08.1 B3KJ08_9BACI Putative uncharacterized protein
          Length = 128

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 74/107 (69%), Gaps = 1/107 (0%)

Query: 8   GLVNISDRVISAIIGYAVMDTPGIAGMSGSTVTGNLAKRLGGKISKKGLSVEVTEEDVAI 67
           GL+ ISD V+S I G A ++TPGIA MSG    G  AKRL GK  +KG++VEV + + AI
Sbjct: 10  GLIRISDDVVSKIAGLAALETPGIAAMSGGLSEG-WAKRLSGKNVQKGVTVEVGQLEAAI 68

Query: 68  HLQVIINYGYAIQEVCKSVQQNVRSAVENMLGLTLGVVNIRVEKLAL 114
            L++I+ Y   I EVC+ +QQNVR AVE+M GL +  VN++VE +A 
Sbjct: 69  DLRIIVLYETPIHEVCRMLQQNVREAVESMTGLRVVEVNVKVEGVAF 115


>Q3AAL8.1 Q3AAL8_CARHZ Putative uncharacterized protein
          Length = 133

 Score = 90.9 bits (224), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 2/114 (1%)

Query: 2   EQDSHKGLVNISDRVISAIIGYAVMDTPGIAGMSGSTVTGNLAKRLGGKISKKGLSVEVT 61
           E+ +  G + ISD V++ I G A  + PG+AGMSG T+ G +A++LG K   KG+ VEV 
Sbjct: 11  EEGTEIGSIKISDEVVAVIAGLAASEIPGVAGMSG-TLAG-IAEKLGMKSMAKGVKVEVG 68

Query: 62  EEDVAIHLQVIINYGYAIQEVCKSVQQNVRSAVENMLGLTLGVVNIRVEKLALP 115
           E + AI L +I+ YG  I +V   VQQ V+ AVENM GLT+  VN+ V+ +  P
Sbjct: 69  ERETAIDLYIIVEYGVRIPDVASEVQQAVKKAVENMTGLTVVEVNVHVQGVHFP 122


>B0K9D8.1 B0K9D8_THEP3 Putative uncharacterized protein
          Length = 135

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 73/108 (67%), Gaps = 1/108 (0%)

Query: 3   QDSHKGLVNISDRVISAIIGYAVMDTPGIAGMSGSTVTGNLAKRLGGKISKKGLSVEVTE 62
           ++   G + IS+ V+S I G A  + PG+AGMSG  V G +++ LG K   KG+ VEV E
Sbjct: 9   ENQELGTIKISEEVVSVIAGLAATEVPGVAGMSGGVVNG-ISEMLGRKNLGKGVKVEVGE 67

Query: 63  EDVAIHLQVIINYGYAIQEVCKSVQQNVRSAVENMLGLTLGVVNIRVE 110
           ++V+I L +I++YG  I EV  +VQ+NV++AVENM GL +  VNI V+
Sbjct: 68  KEVSIDLYLIVDYGVRIPEVAWNVQENVKNAVENMTGLKVVEVNIHVQ 115


>B0K0U5.1 B0K0U5_THEPX Putative uncharacterized protein
          Length = 135

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 8   GLVNISDRVISAIIGYAVMDTPGIAGMSGSTVTGNLAKRLGGKISKKGLSVEVTEEDVAI 67
           G + IS+ V+S I G A  + PG+AGMSG  V G +++ LG K   KG+ VEV E++V+I
Sbjct: 14  GTIKISEEVVSVIAGLAATEVPGVAGMSGGVVNG-ISEMLGRKNLGKGVKVEVGEKEVSI 72

Query: 68  HLQVIINYGYAIQEVCKSVQQNVRSAVENMLGLTLGVVNIRVE 110
            L +I++YG  I EV  +VQ+NV++AVENM GL +  VNI V+
Sbjct: 73  DLYLIVDYGVRIPEVAWNVQENVKNAVENMTGLKVVEVNIHVQ 115


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 606,888,227
Number of extensions: 20811929
Number of successful extensions: 66749
Number of sequences better than 1.0e-05: 704
Number of HSP's gapped: 66559
Number of HSP's successfully gapped: 704
Length of query: 115
Length of database: 3,060,696,203
Length adjustment: 82
Effective length of query: 33
Effective length of database: 2,288,172,973
Effective search space: 75509708109
Effective search space used: 75509708109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)