BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0057.p (397 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2J9A3.1 B2J9A3_NOSP7 Acyl-CoA dehydrogenase, type 2, C-terminal... 191 1e-46 B0JKL6.1 B0JKL6_MICAN Acyl-CoA dehydrogenase 187 2e-45 B2IFB0.1 B2IFB0_BEII9 Acyl-CoA dehydrogenase type 2 domain 179 4e-43 Q5U772.1 Q5U772_9NOCA DszC 175 6e-42 Q70WT0.1 Q70WT0_9NOCA Sulphide-sulphoxide monooxygenase 174 2e-41 >B2J9A3.1 B2J9A3_NOSP7 Acyl-CoA dehydrogenase, type 2, C-terminal domain protein EC=1.3.99.2 Length = 383 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 183/371 (49%), Gaps = 21/371 (5%) Query: 33 SAKETDREGRYPYTGINALRVAGFTGLSVPVKDGGLGAGYRGDAVLLTAVLMELASWCSS 92 +A E D +G P + LR + L VP + GGLG + + + + E A SS Sbjct: 26 TAVERDAQGGTPKHERDRLRQSNLLKLIVPTEFGGLGQSW----ITVLQITREFAKVDSS 81 Query: 93 TSQIFALHNTGVQLVHALGTAEQQQFFFKEAVEGHLFASFGSEANKDRTALTSVLEHTDG 152 + +F+ H+ GV + H G+A+Q+Q ++ E + + F RT LT ++ Sbjct: 82 IAHVFSYHHLGVVIPHIFGSAQQKQRYYSETIHNNWFWCNALNPLDKRTTLTPENDY--- 138 Query: 153 GYLLNGKKIFATGSPGAKWAFWRSVSAEASGSQDERYMMPIVQLSADGVTVSDDWDGIGQ 212 + LNG K F +GS + + A+ + + ++ GVTV DDWD +GQ Sbjct: 139 -FRLNGIKSFCSGSQDSD-----ILPITATHQETNELNILVIPTQRQGVTVHDDWDNMGQ 192 Query: 213 RGTGSGRVEAVNVFV-PDGHVAGGPGAYSACSSFFAAQFHVNFAAQFVGMAAGAFREARQ 271 R T SG V NV V P+ + A ++ A +N A ++G+A G F A+ Sbjct: 193 RQTDSGSVTFENVLVYPEEILGSRNKANQPFNTIRACLTQLNLANIYLGIAQGVFEAAKT 252 Query: 272 YILEQARPW--QGAGRAAEDPFTLLRMGDMAVRIDSARQLVLRASRLLGACHEQPELLPE 329 Y +PW G A +DP+ L G + V + +A L +A LL A EQ L Sbjct: 253 YTSTNTKPWLTSGVESATQDPYILQHYGKIWVDLQAAVYLTEQAGELLQAAWEQEWSLTA 312 Query: 330 AQTA-----ASRAKVAATDAALEVTGSVFQVMGARAASRKYGIDMYYRNARTLTLHDPVD 384 Q A + AKV AT L++T +F+VMGARA S KYG D Y+RN RT TLHDPVD Sbjct: 313 EQRAECALLVATAKVFATKVGLDITNRIFEVMGARATSAKYGFDRYWRNLRTFTLHDPVD 372 Query: 385 RQREAVGRYEL 395 + + +G++ L Sbjct: 373 YKIQEIGKWAL 383 >B0JKL6.1 B0JKL6_MICAN Acyl-CoA dehydrogenase Length = 394 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 194/375 (51%), Gaps = 27/375 (7%) Query: 34 AKETDREGRYPYTGINALRVAGFTGLSVPVKDGGLGAGYRGDAVLLTAVLMELASWCSST 93 A E D +G P + LR +G L +P + GG G + + L ++ E A SS Sbjct: 27 AVERDHQGGTPKLARDRLRQSGLLTLLIPREYGGSGESW----ITLFRIVREFAQVDSSI 82 Query: 94 SQIFALHNTGVQLVHALGTAEQQQFFFKEAVEGHLFASFGSEANKDRTALTSVLEHTDGG 153 + IF+ H+ GV + H GT EQ+++++KE + + F + RTA+ S +G Sbjct: 83 AHIFSYHHLGVIVPHLFGTIEQKEYYYKETIRQNWFWANALNPLDRRTAIAS-----EGD 137 Query: 154 -YLLNGKKIFATGSPGAKWAFWRS--VSAEASGSQDERYMMPIVQLSADGVTVSDDWDGI 210 + L GKK F +GS W S + A + + + +V +GV + DWD + Sbjct: 138 IFRLEGKKSFCSGS-------WDSDILPVTAIDQETGKISVLVVPTQREGVELHADWDNM 190 Query: 211 GQRGTGSGRVEAVNVFV-PDGHVAGGPGAYSACSSFFAAQFHVNFAAQFVGMAAGAFREA 269 GQR T SG V NV + P ++F A +N A ++G+A GAF A Sbjct: 191 GQRQTDSGSVSFHNVAIYPREFFGSQAFPAPPFATFRACLTQLNLANIYLGIALGAFEAA 250 Query: 270 RQYILEQARPWQGAG--RAAEDPFTLLRMGDMAVRIDSARQLVLRASRLL-GACHEQPEL 326 R+Y EQ RPW AG RA E P+ L R G + V +++AR LV RA+ +L A EQ EL Sbjct: 251 RRYTREQTRPWLTAGVERATEAPYLLHRYGSLWVDLEAARGLVDRATEILQDAWEEQWEL 310 Query: 327 LPEAQ----TAASRAKVAATDAALEVTGSVFQVMGARAASRKYGIDMYYRNARTLTLHDP 382 E + A + AKVAAT LEV +F+VMGARA S YG D Y+RN RT TLHDP Sbjct: 311 TAEKRGRCAVAIAVAKVAATRVGLEVVNQMFEVMGARATSSSYGFDRYWRNLRTFTLHDP 370 Query: 383 VDRQREAVGRYELGQ 397 VD + +G + + + Sbjct: 371 VDYKIRDLGNWIVNE 385 >B2IFB0.1 B2IFB0_BEII9 Acyl-CoA dehydrogenase type 2 domain Length = 403 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 135/377 (35%), Positives = 195/377 (51%), Gaps = 25/377 (6%) Query: 29 VIGPSAKETDREGRYPYTGINALRVAGFTGLSVPVKDGGLGAGYRGDAVLLTAVLMELAS 88 + +A E DR R PY I G G++VP GG A+ + V LAS Sbjct: 33 IFNQAAVERDRNRRLPYPEIEQFSQTGLGGMTVPKDYGGADVS----ALTVAEVTAILAS 88 Query: 89 WCSSTSQIFALHNTGVQLVHALGTAEQQQFFFKEAVEGHLFASFGSEAN----KDRTALT 144 S QI H V+ V GT Q++F+F+ A+ G FA+ +EA D+T T Sbjct: 89 ADGSLGQIPQNHFYLVEAVRLNGTDAQRRFYFERALLGDRFANALAEAGGKYATDQT--T 146 Query: 145 SVLEHTDGGYLLNGKKIFATGSPGAKWAFWRSVSAEASGSQDERYMMPIVQLSADGVTVS 204 +VL D Y+LNG+K + +GS W + A A Q++R ++ V G+TV Sbjct: 147 TVLPDGDD-YVLNGRKFYCSGSLFGHW-----IVAAAQNDQNKRVLV-FVPRDTQGLTVI 199 Query: 205 DDWDGIGQRGTGSGRVEAVNVFVPDGHVAGGPGAYSACSSF--FAAQFHVNFAAQFVGMA 262 DDW G+GQR TGSG V NV V + A+ + FA H AA +G+A Sbjct: 200 DDWSGMGQRTTGSGTVIFDNVRVSAFAIIPHYLAFEQPTQMGAFAQIIH---AAIDLGIA 256 Query: 263 AGAFREARQYILEQARPWQGAGR--AAEDPFTLLRMGDMAVRIDSARQLVLRASRLLGAC 320 GAF ++ +ARPW +G+ A EDP+T+ +GD+ VRI +A LV RA +++ Sbjct: 257 RGAFAATVDFVRTKARPWVDSGQEHAYEDPYTIAAIGDLRVRIAAAEALVRRAGKIIDKA 316 Query: 321 HEQPELLPE-AQTAASRAKVAATDAALEVTGSVFQVMGARAASRKYGIDMYYRNARTLTL 379 +PE E A A + A+VA D +L VT +F++ G+R+A +D Y+R+ART TL Sbjct: 317 RVEPETYSEPASIAVAEARVATNDVSLLVTSKLFELGGSRSALASLDLDRYWRDARTHTL 376 Query: 380 HDPVDRQREAVGRYELG 396 HDPV + ++G Y L Sbjct: 377 HDPVRWKYFSLGNYWLN 393 >Q5U772.1 Q5U772_9NOCA DszC Length = 417 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 125/378 (33%), Positives = 180/378 (47%), Gaps = 20/378 (5%) Query: 33 SAKETDREGRYPYTGINALRVAGFTGLSVPVKDGGLGAGYRGDAVLLTAVLMELASWCSS 92 +A E DR G LR +G L VP + GG GA D + V+ E+A+ S Sbjct: 34 TAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGA----DWLTAIEVVREIAAADGS 89 Query: 93 TSQIFALHNTGVQLVHALGTAEQQQFFFKEAVEGHLFASFGSEANKDRTA--LTSVLEHT 150 +F H T ++ +G+ EQ++ + + + + + S N S Sbjct: 90 LGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTE 149 Query: 151 DGGYLLNGKKIFATGSPGAKWAFWRSVSAEASGSQDERYMMPIVQLSADGVTVSDDWDGI 210 DGGY+LNG K F +G+ G+ F V + S Q + + S GVT +DDW I Sbjct: 150 DGGYVLNGTKHFCSGAKGSDLLFVLGVVQDDS-PQQGAIIAAAIPTSRAGVTPNDDWAAI 208 Query: 211 GQRGTGSGRVEAVNVFVPDGHVAGGPGAY------SACSSFFAAQFHVNFAAQFVGMAAG 264 G R T SG + NV V V G P A+ S S FA + FA ++G+A G Sbjct: 209 GMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHG 268 Query: 265 AFREARQYILEQARPWQGAG--RAAEDPFTLLRMGDMAVRIDSARQLVLRASRLLGACHE 322 A AR+Y QARPW AG +A EDP+T+ G+ + + A A+ LL + Sbjct: 269 ALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWD 328 Query: 323 Q-----PELLPEAQTAASRAKVAATDAALEVTGSVFQVMGARAASRKYGIDMYYRNARTL 377 + PE E S K AT+AAL ++ VF+V+GAR +YG D ++RN RT Sbjct: 329 KGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTH 388 Query: 378 TLHDPVDRQREAVGRYEL 395 +LHDPV + VG++ L Sbjct: 389 SLHDPVSYKIADVGKHTL 406 >Q70WT0.1 Q70WT0_9NOCA Sulphide-sulphoxide monooxygenase Length = 417 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 125/378 (33%), Positives = 179/378 (47%), Gaps = 20/378 (5%) Query: 33 SAKETDREGRYPYTGINALRVAGFTGLSVPVKDGGLGAGYRGDAVLLTAVLMELASWCSS 92 +A E DR G LR +G L VP + GG GA D V+ E+A+ S Sbjct: 34 TAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGA----DWPTAIEVVREIAAADGS 89 Query: 93 TSQIFALHNTGVQLVHALGTAEQQQFFFKEAVEGHLFASFGSEANKDRTA--LTSVLEHT 150 +F H T ++ +G+ EQ++ + + + + + S N S Sbjct: 90 LGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTE 149 Query: 151 DGGYLLNGKKIFATGSPGAKWAFWRSVSAEASGSQDERYMMPIVQLSADGVTVSDDWDGI 210 DGGY+LNG K F +G+ G+ F V + S Q + + S GVT +DDW I Sbjct: 150 DGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDS-PQQGAIIAAAIPTSRAGVTPNDDWAAI 208 Query: 211 GQRGTGSGRVEAVNVFVPDGHVAGGPGAY------SACSSFFAAQFHVNFAAQFVGMAAG 264 G R T SG + NV V V G P A+ S S FA + FA ++G+A G Sbjct: 209 GMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHG 268 Query: 265 AFREARQYILEQARPWQGAG--RAAEDPFTLLRMGDMAVRIDSARQLVLRASRLLGACHE 322 A AR+Y QARPW AG +A EDP+T+ G+ + + A A+ LL + Sbjct: 269 ALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWD 328 Query: 323 Q-----PELLPEAQTAASRAKVAATDAALEVTGSVFQVMGARAASRKYGIDMYYRNARTL 377 + PE E S K AT+AAL ++ VF+V+GAR +YG D ++RN RT Sbjct: 329 KGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTH 388 Query: 378 TLHDPVDRQREAVGRYEL 395 +LHDPV + VG++ L Sbjct: 389 SLHDPVSYKIADVGKHTL 406 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,287,829,058 Number of extensions: 94474641 Number of successful extensions: 247952 Number of sequences better than 1.0e-05: 4262 Number of HSP's gapped: 241655 Number of HSP's successfully gapped: 4265 Length of query: 397 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 259 Effective length of database: 1,760,596,133 Effective search space: 455994398447 Effective search space used: 455994398447 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)