BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0054.p (332 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1P9V3.1 C1P9V3_BACCO Oligopeptide/dipeptide ABC transporter, AT... 392 e-107 B3K9K0.1 B3K9K0_9BACI Oligopeptide/dipeptide ABC transporter, AT... 390 e-107 B3K3R4.1 B3K3R4_9BACI Oligopeptide/dipeptide ABC transporter, AT... 389 e-106 C0ZB26.1 C0ZB26_BREBN ABC transporter ATP-binding protein 377 e-103 A4ECM5.1 A4ECM5_9ACTN Putative uncharacterized protein 376 e-102 >C1P9V3.1 C1P9V3_BACCO Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 335 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/319 (57%), Positives = 239/319 (74%) Query: 14 PLLQVKNLKKHFPARTPGSFRKSLVKAVDGVSFEMNEGETYGLVGESGCGKSTLGRTLLR 73 PLL+++NLKK+FP T K VK+VDGV F++ E +T GLVGESGCGKST GRT+LR Sbjct: 17 PLLEIRNLKKYFPITTTLGKTKGFVKSVDGVDFDLYENQTLGLVGESGCGKSTTGRTILR 76 Query: 74 LTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKIIGKALEEPLVIHG 133 L EPT GEA+YQG ++ AL+ R+E Q+VFQDP SSL+P+ IG A+ EP+ IH Sbjct: 77 LIEPTDGEAIYQGKNIFQLKGKALKQIRKEFQIVFQDPHSSLDPKMRIGDAVMEPMKIHH 136 Query: 134 IGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALILNPKIVVCDEPVS 193 IG+ ++RM RAM++L VG++ + +YR PHE SGGQRQRIGLARAL +NPK+VVCDEPVS Sbjct: 137 IGTKKDRMDRAMELLLKVGIREDQFYRYPHEFSGGQRQRIGLARALAVNPKLVVCDEPVS 196 Query: 194 ALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYLGKLVEEADTDSLF 253 ALDV IQSQ+INL+ ++Q++ LTYLFI+HD+ VVRH++D+I +MYLG++VE A TD LF Sbjct: 197 ALDVSIQSQVINLLEEIQEQFQLTYLFISHDLSVVRHMADQICVMYLGQIVERAPTDELF 256 Query: 254 ANPLHPYTQVLLSAVPAPDPTRIKERIILQXXXXXXXXXXXXCAFHTRCPYALEKCASEV 313 +PLHPYTQ LLSA+P P+P KERII++ C FHTRCPYA C +E Sbjct: 257 THPLHPYTQALLSAIPLPNPKLKKERIIIKGEVPSPIDPPSGCVFHTRCPYATALCKTER 316 Query: 314 PIQRSVAPGHRVACHVVQS 332 P R +APGH V+CH+ +S Sbjct: 317 PQARELAPGHIVSCHLAES 335 >B3K9K0.1 B3K9K0_9BACI Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 335 Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/331 (56%), Positives = 241/331 (72%), Gaps = 2/331 (0%) Query: 1 MNAVSLATGEAKQPLLQVKNLKKHFPARTPGSFRKSLVKAVDGVSFEMNEGETYGLVGES 60 M++V+ T +PLL+VK+L K+F ++ S+RK VKAV+ VSF ++EGETYGLVGES Sbjct: 1 MSSVTSVT--KHEPLLEVKHLTKYFALKSGSSWRKQQVKAVEDVSFVIHEGETYGLVGES 58 Query: 61 GCGKSTLGRTLLRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKI 120 G GKST GRT++RLT+P++GEA + D+ AL+ +R+E+QM+FQDP SSL+P+K Sbjct: 59 GSGKSTTGRTIMRLTDPSAGEAFFDNQDIFSLRSKALQNFRREVQMIFQDPNSSLDPKKR 118 Query: 121 IGKALEEPLVIHGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALI 180 IG ++ EP++IHG G+ ER R ++++ VG H R PHE SGGQRQRIG+A+AL Sbjct: 119 IGYSVAEPMIIHGQGTKAERQERVLELMSRVGFASHHLDRFPHEFSGGQRQRIGIAKALA 178 Query: 181 LNPKIVVCDEPVSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYL 240 L+PK+VVCDEPVSALDV IQSQI+NL+ +LQ E L+YLFIAHD+ VVRHI+DRIG+MYL Sbjct: 179 LSPKLVVCDEPVSALDVSIQSQILNLLVELQSEFQLSYLFIAHDLSVVRHIADRIGVMYL 238 Query: 241 GKLVEEADTDSLFANPLHPYTQVLLSAVPAPDPTRIKERIILQXXXXXXXXXXXXCAFHT 300 G LVE+A TD LFA+PLHPYTQ LLSA+PAP P +ERIILQ C FHT Sbjct: 239 GHLVEQAPTDELFAHPLHPYTQFLLSAIPAPHPKTKRERIILQGDIPSPLNPPSGCVFHT 298 Query: 301 RCPYALEKCASEVPIQRSVAPGHRVACHVVQ 331 RCPY L+ C P R + GH V CH+ + Sbjct: 299 RCPYVLDVCRQVKPANRETSTGHTVQCHLFE 329 >B3K3R4.1 B3K3R4_9BACI Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 328 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/325 (58%), Positives = 239/325 (73%), Gaps = 7/325 (2%) Query: 11 AKQPLLQVKNLKKHFPARTPGSF-----RKSLVKAVDGVSFEMNEGETYGLVGESGCGKS 65 A + +L+V +L K FP GSF K+ V AV VS ++NEGETYGLVGESG GKS Sbjct: 5 ADRSILKVSSLHKQFPVY--GSFGKIGGAKAYVNAVTDVSLQLNEGETYGLVGESGSGKS 62 Query: 66 TLGRTLLRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKIIGKAL 125 T GRT+L LT + G+ LY+ +L +R +R +R+++Q+VFQDPFSSLNPRK IG+ L Sbjct: 63 TTGRTILGLTPASQGQVLYRDRELAAMTREEMRNFRKDVQLVFQDPFSSLNPRKRIGRML 122 Query: 126 EEPLVIHGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALILNPKI 185 EEPL+IH +G ER IL+TVG+Q EH +R PHE SGGQRQR+GLARALI+NPKI Sbjct: 123 EEPLIIHKMGDKAERQETVFRILKTVGLQPEHAFRFPHEFSGGQRQRLGLARALIMNPKI 182 Query: 186 VVCDEPVSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYLGKLVE 245 +VCDEPVSALDV IQSQI+N++++LQ E+ LT LFI HDI VVR+ISDRIGIMYLGK++E Sbjct: 183 IVCDEPVSALDVSIQSQILNMLKRLQREMKLTLLFITHDISVVRYISDRIGIMYLGKIME 242 Query: 246 EADTDSLFANPLHPYTQVLLSAVPAPDPTRIKERIILQXXXXXXXXXXXXCAFHTRCPYA 305 EA TD LF PLHPYT+ L SAVP + +R+KERI+L+ C FHTRCPYA Sbjct: 243 EALTDDLFHEPLHPYTKALFSAVPDFNRSRLKERIMLRGEIPSPISPPSGCVFHTRCPYA 302 Query: 306 LEKCASEVPIQRSVAPGHRVACHVV 330 + C +++P R V PGH+VACH+V Sbjct: 303 TDVCRTDIPAVREVRPGHKVACHLV 327 >C0ZB26.1 C0ZB26_BREBN ABC transporter ATP-binding protein Length = 323 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/321 (57%), Positives = 232/321 (72%), Gaps = 1/321 (0%) Query: 13 QPLLQVKNLKKHFP-ARTPGSFRKSLVKAVDGVSFEMNEGETYGLVGESGCGKSTLGRTL 71 + LL VKNLKK++P +VKAVD VSF + GET GLVGESGCGKST GR+L Sbjct: 3 EDLLVVKNLKKYYPITGGVLGGEVGVVKAVDDVSFTVKSGETLGLVGESGCGKSTTGRSL 62 Query: 72 LRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKIIGKALEEPLVI 131 LRL EPTSGE + G D++ S A+R R+++Q+VFQDPF+SLNPR I K LEEPL++ Sbjct: 63 LRLIEPTSGEINFDGTDVMSLSTDAMRKMRRDMQIVFQDPFASLNPRHNIEKILEEPLIV 122 Query: 132 HGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALILNPKIVVCDEP 191 HG+GS ER +R ++L+ VG+ H R PH+ SGGQRQRIG+ARAL+L PK++V DEP Sbjct: 123 HGLGSSAERKKRVQEMLEIVGLSSYHASRYPHQFSGGQRQRIGIARALMLKPKLIVADEP 182 Query: 192 VSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYLGKLVEEADTDS 251 VSALDV IQSQ++NLM+ LQ E GLTYLFIAHD+ VVRHISDR+G+MYLG++VE + Sbjct: 183 VSALDVSIQSQVLNLMQDLQREFGLTYLFIAHDLSVVRHISDRVGVMYLGRIVELTTSSQ 242 Query: 252 LFANPLHPYTQVLLSAVPAPDPTRIKERIILQXXXXXXXXXXXXCAFHTRCPYALEKCAS 311 L++NPLHPYT+ LLSAVP+PDP ++ER+ILQ C FHTRCP+ E+C + Sbjct: 243 LYSNPLHPYTRALLSAVPSPDPDAVRERVILQGDVPSPAKPPSGCTFHTRCPHVTEECRT 302 Query: 312 EVPIQRSVAPGHRVACHVVQS 332 P GH VACH+ +S Sbjct: 303 VRPEFADTGDGHFVACHLYKS 323 >A4ECM5.1 A4ECM5_9ACTN Putative uncharacterized protein Length = 342 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/331 (52%), Positives = 237/331 (71%), Gaps = 5/331 (1%) Query: 6 LATGEAKQPLLQVKNLKKHFPART---PGSFRKSLVKAVDGVSFEMNEGETYGLVGESGC 62 +A + PLL+V++L K FPA + F K +V AV+ +SFE+ GET+GLVGESGC Sbjct: 1 MADNNERTPLLKVEHLSKEFPAESGMFAKRFSKRVVSAVNDISFEIYPGETFGLVGESGC 60 Query: 63 GKSTLGRTLLRLTEPTSGEALYQGNDLIGQSRHALRGYRQELQMVFQDPFSSLNPRKIIG 122 GKST GRT++RLT+PT+G+ +QG D+ S+H ++ R+E+Q +FQDP++SLNPR IG Sbjct: 61 GKSTTGRTIMRLTKPTAGKVFFQGKDVAEMSKHEIKDMRREMQFIFQDPYASLNPRMTIG 120 Query: 123 KALEEPLVIHGIGSPEERMRRAMDILQTVGMQMEHYYRLPHELSGGQRQRIGLARALILN 182 + + EP+ IHG+G+ EER+ R ++L VG+ EH R PHE SGGQRQR+G+ARA L Sbjct: 121 EIVSEPMTIHGVGTKEERIERVRELLDVVGLNPEHINRYPHEFSGGQRQRVGIARAFALK 180 Query: 183 PKIVVCDEPVSALDVIIQSQIINLMRKLQDELGLTYLFIAHDIGVVRHISDRIGIMYLGK 242 PK+++CDEPVSALDV IQ+Q++NL+++LQD+ G YLFIAHD+ VV+HISDR+ +MYLGK Sbjct: 181 PKLIICDEPVSALDVSIQAQVLNLLKELQDKFGTAYLFIAHDLSVVQHISDRVAVMYLGK 240 Query: 243 LVEEADTDSLFANPLHPYTQVLLSAVPAPDPT--RIKERIILQXXXXXXXXXXXXCAFHT 300 +VE +D +L++ P HPYTQ LLSAVP PDP + ++RIIL C FHT Sbjct: 241 MVEVSDWKTLYSEPHHPYTQSLLSAVPVPDPDIQKTRKRIILAGDPPSPLDPPTGCRFHT 300 Query: 301 RCPYALEKCASEVPIQRSVAPGHRVACHVVQ 331 RCP A C+ ++P + VAPGH ACH + Sbjct: 301 RCPIAQGICSEKLPEFKEVAPGHCCACHFAE 331 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,902,372,660 Number of extensions: 77372110 Number of successful extensions: 481908 Number of sequences better than 1.0e-05: 85761 Number of HSP's gapped: 376485 Number of HSP's successfully gapped: 91814 Length of query: 332 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 196 Effective length of database: 1,779,438,163 Effective search space: 348769879948 Effective search space used: 348769879948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)