BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0052.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9J8.1 B3K9J8_9BACI Binding-protein-dependent transport system... 252 2e-65 C1P9V1.1 C1P9V1_BACCO Binding-protein-dependent transport system... 228 2e-58 Q6D2Y3.1 Q6D2Y3_ERWCT ABC transporter permease protein 228 3e-58 B3K3R2.1 B3K3R2_9BACI Binding-protein-dependent transport system... 225 2e-57 A4IPU5.1 A4IPU5_GEOTN Oligopeptide ABC transporter (Permease) 222 2e-56 >B3K9J8.1 B3K9J8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 309 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 129/240 (53%), Positives = 159/240 (66%) Query: 1 VDVVNRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGY 60 ++ +NRL PS H+FGTDNFGRD+ +RV+YG+ +S L+G AV L A IGLV+GL S Y Sbjct: 58 LEAMNRLKAPSAEHIFGTDNFGRDVFSRVLYGMRVSLLVGAAVTLIAGLIGLVVGLLSAY 117 Query: 61 YKWLDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLV 120 Y D ILMRI DGL+AFP GP + N+I+ L+IV+IPSIARIVRSA LV Sbjct: 118 YVLCDHILMRICDGLYAFPSILLAISIVAIMGPRTSNVIIALSIVYIPSIARIVRSAALV 177 Query: 121 AKEQTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPA 180 KE+TYIE ++A GA R+I HILPN L LI+Q + LSFLGAGIPA Sbjct: 178 IKEKTYIEGLRAQGAGPVRIIGLHILPNVLSPLIIQASFIFAVSILTEASLSFLGAGIPA 237 Query: 181 PTPSLGNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPHARRPGNKKK 240 P PSLGNLL DGK I+N+ WMT+FPG +NL GDGLRDLLDP ++ +K Sbjct: 238 PAPSLGNLLLDGKNVIFNAWWMTVFPGICIILMILGLNLMGDGLRDLLDPKMKKKHAFRK 297 >C1P9V1.1 C1P9V1_BACCO Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 152/238 (63%), Gaps = 1/238 (0%) Query: 1 VDVVNRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGY 60 +D +RL P H FGTDN+GRDL +RV YG +S +G + + + IG+V GLY+ Y Sbjct: 65 IDPAHRLQAPGSIHWFGTDNYGRDLFSRVAYGGRVSLAVGLSATVLTALIGMVTGLYAAY 124 Query: 61 YKWLDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLV 120 Y+ LD +LMRI DGL AFP GP N+++ +T+V IPS+AR+VRS LV Sbjct: 125 YRLLDHVLMRICDGLMAFPDILLAIAITAVLGPRPVNVVVAITVVKIPSVARVVRSVALV 184 Query: 121 AKEQTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPA 180 KE+TYIEA++A GA R+IW HI PNT+ IVQ T LSFLGAG+PA Sbjct: 185 VKEKTYIEALKAQGAGSFRIIWRHIAPNTISPFIVQATYVFALSIILEAGLSFLGAGVPA 244 Query: 181 PTPSLGNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPHARRPGNK 238 P PS GN+L DGK+ I+++ WMT+FPG +NLFGDGLRDLLDPH + NK Sbjct: 245 PNPSWGNILYDGKIVIFSAWWMTVFPGMFIILSVLGLNLFGDGLRDLLDPHTNK-ANK 301 >Q6D2Y3.1 Q6D2Y3_ERWCT ABC transporter permease protein Length = 287 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 148/228 (64%) Query: 6 RLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGYYKWLD 65 RLS P+ H FGTDNFGRD+ RV + +S +G AVAL + IG +IGL +Y+ LD Sbjct: 43 RLSAPTFQHWFGTDNFGRDVFVRVAIAVQISLSVGGAVALISGTIGTLIGLLCTWYRLLD 102 Query: 66 QILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLVAKEQT 125 I+MRI DGLFAFP GP+S N++L L++V++PS+AR++R+A LV KE+ Sbjct: 103 AIIMRICDGLFAFPSLLLAISIVGILGPNSANVVLALSLVYVPSVARVMRAAALVIKEKN 162 Query: 126 YIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPAPTPSL 185 YIEA++A GA R+IW HILPN + LIVQ + LSFLG+GIPAPTPSL Sbjct: 163 YIEALRAQGAKSRRIIWLHILPNVISPLIVQVSWIFSVAILTEAALSFLGSGIPAPTPSL 222 Query: 186 GNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPHAR 233 GNLL +GK I+ S WMT FPG +N+ GDGLRD+ DP + Sbjct: 223 GNLLLEGKKVIFTSWWMTFFPGIAIVLLILSLNMIGDGLRDISDPTLK 270 >B3K3R2.1 B3K3R2_9BACI Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/207 (55%), Positives = 138/207 (66%) Query: 1 VDVVNRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGY 60 + VV+RL+PP H GTD FGRDLL R++YG +S +G AVAL +SA+GLVIG+Y+ Y Sbjct: 63 MKVVDRLTPPGAEHWLGTDEFGRDLLTRLLYGARVSISVGLAVALLSSALGLVIGVYATY 122 Query: 61 YKWLDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLV 120 YK LD ILMRI DGL A P G S+ N+I+ LTIVF P+IAR+VRSA LV Sbjct: 123 YKTLDHILMRICDGLIAIPGILLAIALMAALGASALNVIIALTIVFTPNIARVVRSAALV 182 Query: 121 AKEQTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPA 180 +EQTYIEAM GAS TR+IW HI+PN L L+VQ T LSFLGAGIPA Sbjct: 183 VREQTYIEAMHVQGASSTRIIWQHIVPNVLSPLLVQATFVFAEAIISEAALSFLGAGIPA 242 Query: 181 PTPSLGNLLSDGKLYIYNSPWMTIFPG 207 P S GN+L KL IY + WM +FPG Sbjct: 243 PEASWGNILQASKLVIYKAWWMVVFPG 269 >A4IPU5.1 A4IPU5_GEOTN Oligopeptide ABC transporter (Permease) Length = 300 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 158/240 (65%) Query: 1 VDVVNRLSPPSGTHLFGTDNFGRDLLARVVYGIGMSALIGCAVALGASAIGLVIGLYSGY 60 +D +NRL PPS H FGTDNFGRDL +RVV+G +S ++G + AL + IG++IGLYS Y Sbjct: 61 IDPMNRLQPPSADHWFGTDNFGRDLFSRVVHGGRVSLVVGFSAALLTAIIGMIIGLYSSY 120 Query: 61 YKWLDQILMRIMDGLFAFPXXXXXXXXXXXXGPSSGNLILCLTIVFIPSIARIVRSAVLV 120 Y+ LD +LMRI DGL AFP GP+ N+++ +TIV +P++ARIVRSA LV Sbjct: 121 YRILDHVLMRICDGLIAFPDILLAIAITAILGPNPFNVVIAITIVKVPAMARIVRSAALV 180 Query: 121 AKEQTYIEAMQALGASQTRMIWSHILPNTLPQLIVQGTXXXXXXXXXXXXLSFLGAGIPA 180 KEQTYIEA++A GAS R+IW H+ PNT+ +VQ T LSFLGAG+PA Sbjct: 181 VKEQTYIEALKAQGASSWRIIWVHMAPNTISPFLVQMTYVFALSIILEAGLSFLGAGVPA 240 Query: 181 PTPSLGNLLSDGKLYIYNSPWMTIFPGXXXXXXXXXMNLFGDGLRDLLDPHARRPGNKKK 240 P PS GN+L DGK I+ + WMT+FP +NL GDGLRDLLDPH + K K Sbjct: 241 PNPSWGNILYDGKAVIFRAWWMTLFPSIFITLAVLGLNLLGDGLRDLLDPHTSKANKKLK 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,287,923,706 Number of extensions: 45789038 Number of successful extensions: 135581 Number of sequences better than 1.0e-05: 5863 Number of HSP's gapped: 127010 Number of HSP's successfully gapped: 5891 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)