BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0520.0050.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4IPU6.1 A4IPU6_GEOTN ABC transporter (Permease) 320 8e-86 B4BNQ2.1 B4BNQ2_9BACI Binding-protein-dependent transport system... 320 8e-86 B3K3R1.1 B3K3R1_9BACI Binding-protein-dependent transport system... 301 6e-80 C1P9V0.1 C1P9V0_BACCO Binding-protein-dependent transport system... 296 2e-78 B6FU31.1 B6FU31_9CLOT Putative uncharacterized protein 286 3e-75 >A4IPU6.1 A4IPU6_GEOTN ABC transporter (Permease) Length = 316 Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 147/283 (51%), Positives = 203/283 (71%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PGDPAAVMLG PE V LR QLGL+LPL +Q+ W L GD G S + + V+ Sbjct: 31 PGDPAAVMLGSQATPEEVEQLREQLGLNLPLYEQFANWFFGLLQGDFGWSIYYNKPVLTV 90 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 EHLGPT P+GI AA KRG D++ + G+ +P F++ +F Sbjct: 91 FLEHLGPTLSLAVLAQAISMVLAIPMGISAARKRGTKIDQIFMALVMLGMAIPSFLMGLF 150 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 + LF+++LK PV+GY+PLS+GLW HLK+++LPA +LG++Q A++AR+TRS++L+VL Sbjct: 151 LMQLFALKLKLFPVAGYEPLSSGLWNHLKFMILPATALGIIQTAIIARMTRSSMLDVLSA 210 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 N+IKTA +KG+ +++IVYKH LRNA IPILTV+G FGTLIAGA V ET+FN+PG+GQ++ Sbjct: 211 NFIKTAYAKGVKEKVIVYKHALRNAAIPILTVLGQEFGTLIAGAVVTETVFNLPGIGQLV 270 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIRL 313 ++++++RDY VIQG IL A++Y+LVNLIVDLLY VDPR+R Sbjct: 271 IHAIEKRDYAVIQGTILLAALSYLLVNLIVDLLYGIVDPRVRF 313 >B4BNQ2.1 B4BNQ2_9BACI Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 147/283 (51%), Positives = 203/283 (71%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PGDPAAVMLG PE V LR QLGL+LPL +Q+ W L GD G S + + V+ Sbjct: 31 PGDPAAVMLGSQATPEEVEQLREQLGLNLPLYEQFANWFFGLLQGDFGWSIYYNKPVLTV 90 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 EHLGPT P+GI AA KRG D++ + G+ +P F++ +F Sbjct: 91 FLEHLGPTLSLAVLAQAISMVLAIPMGISAARKRGTKIDQIFMALVMLGMAIPSFLMGLF 150 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 + LF+++LK PV+GY+PLS+GLW HLK+++LPA +LG++Q A++AR+TRS++L+VL Sbjct: 151 LMQLFALKLKLFPVAGYEPLSSGLWNHLKFMILPATALGIIQTAIIARMTRSSMLDVLSA 210 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 N+IKTA +KG+ +++IVYKH LRNA IPILTV+G FGTLIAGA V ET+FN+PG+GQ++ Sbjct: 211 NFIKTAYAKGVKEKVIVYKHALRNAAIPILTVLGQEFGTLIAGAVVTETVFNLPGIGQLV 270 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIRL 313 ++++++RDY VIQG IL A++Y+LVNLIVDLLY VDPR+R Sbjct: 271 IHAIEKRDYAVIQGTILLAALSYLLVNLIVDLLYGIVDPRVRF 313 >B3K3R1.1 B3K3R1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 155/313 (49%), Positives = 208/313 (66%) Query: 1 MAFYIAKRXXXXXXXXXXXXXXXXXXXXXXPGDPAAVMLGDGTNPETVAALRTQLGLDLP 60 M YI KR PG+PAA +LG + E + L LGLD P Sbjct: 1 MLAYITKRLLSLIPVLAVVTIAIFLIIHITPGNPAAAILGMEASEEEIQQLNQDLGLDRP 60 Query: 61 LLQQYTRWIGQALTGDLGDSFFMKQSVVQALREHLGPTXXXXXXXXXXXXXXXXPLGIRA 120 +L+QYT W+ GDLGDS FMKQ V +A+ EH+ PT P GI A Sbjct: 61 ILEQYTSWVANLFKGDLGDSIFMKQPVSEAIAEHITPTLSLAILAQVIAILLAIPFGIIA 120 Query: 121 AVKRGEAADKMLTGFTLFGITVPGFVLSMFTVLLFSVQLKWLPVSGYKPLSAGLWTHLKY 180 A KRG AD L G +L G+ +P F+L +F +L V+L+WLPV+GY+PLS+GLW H+KY Sbjct: 121 AYKRGSIADYTLMGISLLGMALPSFLLGLFLMLFVGVKLQWLPVAGYEPLSSGLWEHMKY 180 Query: 181 LLLPALSLGVVQAAVLARVTRSAVLEVLGENYIKTALSKGMSDRMIVYKHVLRNALIPIL 240 L+LP +SLG +QAA++ R+TRS++LEVL N+IKTA SKG+ + +++KH R+A +PIL Sbjct: 181 LILPGISLGTIQAALITRMTRSSMLEVLNLNFIKTARSKGLHEMKVLFKHAFRSAFLPIL 240 Query: 241 TVIGGSFGTLIAGAAVIETIFNIPGMGQMLVNSVQRRDYTVIQGIILFVAVTYVLVNLIV 300 TVIG +FGTL+ GA V+E IFNIPG+GQ+++NS+ RRD+ VIQG++L V + YV +NLI+ Sbjct: 241 TVIGQTFGTLVTGAVVVEAIFNIPGLGQLILNSISRRDFVVIQGVVLVVTLMYVTINLII 300 Query: 301 DLLYAAVDPRIRL 313 DLLY AVDPR+RL Sbjct: 301 DLLYGAVDPRVRL 313 >C1P9V0.1 C1P9V0_BACCO Binding-protein-dependent transport systems inner membrane component Length = 346 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/284 (52%), Positives = 202/284 (71%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PGDPA+V+LG +P V LR +LGL+LPL QQ+ W GDLG S + V+ A Sbjct: 60 PGDPASVILGSQASPAEVEQLRDKLGLNLPLYQQFFDWFIGLFRGDLGWSISQNKPVLDA 119 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 EHLGPT P+GI AA KRG D+ + G+ VP F+L + Sbjct: 120 FLEHLGPTLSLSILAQAISIILAIPIGIIAARKRGSKTDQFFMVLVMLGMAVPSFLLGLL 179 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 + LF V+LKW PV+GY+PLSAG+W HL+Y+++PAL+LG++Q AV+AR+TRS++L+VL Sbjct: 180 LMQLFGVKLKWFPVAGYEPLSAGVWNHLRYMIMPALALGIIQTAVIARMTRSSMLDVLSA 239 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 NYIKTA +KG+ R+++YKH LRNA I I+TV+G SFG+LIAGA V ET+FN+PG+GQ++ Sbjct: 240 NYIKTAKAKGLKQRIVIYKHALRNASIAIITVVGESFGSLIAGAVVTETVFNLPGIGQLI 299 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIRLK 314 +NS+ RRDY VIQG+IL +V+Y+LVNLIVDLLY +DPR+RL Sbjct: 300 MNSILRRDYAVIQGVILLASVSYLLVNLIVDLLYGVIDPRVRLN 343 >B6FU31.1 B6FU31_9CLOT Putative uncharacterized protein Length = 288 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 142/282 (50%), Positives = 186/282 (65%) Query: 31 PGDPAAVMLGDGTNPETVAALRTQLGLDLPLLQQYTRWIGQALTGDLGDSFFMKQSVVQA 90 PG PA +LG PE + L +LG D P L QY W G+ L GD G S+F+ QSV++A Sbjct: 3 PGGPATALLGMEATPEQIHTLNAELGFDRPFLTQYVDWFGKVLQGDWGTSYFLHQSVLEA 62 Query: 91 LREHLGPTXXXXXXXXXXXXXXXXPLGIRAAVKRGEAADKMLTGFTLFGITVPGFVLSMF 150 + E+ PT PLGI AA KRG A D +L G+ +PGF+LSMF Sbjct: 63 IAEYFPPTLSLAILAQIIALLLAVPLGILAACKRGTAVDVAAVTTSLLGVALPGFLLSMF 122 Query: 151 TVLLFSVQLKWLPVSGYKPLSAGLWTHLKYLLLPALSLGVVQAAVLARVTRSAVLEVLGE 210 +L+FSV W PV+GY LS G+ HLKYL +PALSLG+VQAA L R+ RS++L+VL Sbjct: 123 LMLIFSVYNHWFPVAGYASLSEGILEHLKYLFVPALSLGIVQAAYLTRMIRSSLLDVLHM 182 Query: 211 NYIKTALSKGMSDRMIVYKHVLRNALIPILTVIGGSFGTLIAGAAVIETIFNIPGMGQML 270 NYI TA SKG+ +R ++ ++ L+NA ILT IG SFG+LI G V ET+FNIPG+G + Sbjct: 183 NYIHTARSKGLKERTVILRYGLKNAAPVILTAIGQSFGSLITGTIVTETLFNIPGLGMLT 242 Query: 271 VNSVQRRDYTVIQGIILFVAVTYVLVNLIVDLLYAAVDPRIR 312 ++S+ RRD VIQG++LFV + YV+VNL VD+LY VDPR+R Sbjct: 243 LSSINRRDVFVIQGVVLFVTLLYVIVNLTVDVLYGFVDPRLR 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,528,619,671 Number of extensions: 55935615 Number of successful extensions: 239336 Number of sequences better than 1.0e-05: 6026 Number of HSP's gapped: 229096 Number of HSP's successfully gapped: 6040 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)